data_6Y7X # _model_server_result.job_id 0ou1lVg3DmX1ddpR8Myrfw _model_server_result.datetime_utc '2024-11-16 17:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6Y7X # _exptl.entry_id 6Y7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y7X _cell.length_a 80.864 _cell.length_b 102.777 _cell.length_c 103.358 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 81 A GLU 81 1_555 C CA CA . A CA 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc2 A OD2 ASP 313 A ASP 313 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc3 A OD1 ASP 315 A ASP 315 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 A OD1 ASP 316 A ASP 316 1_555 C CA CA . A CA 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc5 A OD2 ASP 316 A ASP 316 1_555 C CA CA . A CA 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc6 A OD1 ASP 354 A ASP 354 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc7 A OD2 ASP 354 A ASP 354 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc8 A O ASP 354 A ASP 354 1_555 D CA CA . A CA 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc9 A O GLU 356 A GLU 356 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 A OE2 GLU 359 A GLU 359 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc11 C CA CA . A CA 402 1_555 I O HOH . A HOH 533 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc12 C CA CA . A CA 402 1_555 I O HOH . A HOH 555 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc13 D CA CA . A CA 403 1_555 I O HOH . A HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc14 D CA CA . A CA 403 1_555 I O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc15 D CA CA . A CA 403 1_555 I O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc16 D CA CA . A CA 403 1_555 I O HOH . A HOH 702 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc17 E CA CA . A CA 404 1_555 I O HOH . A HOH 503 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc18 E CA CA . A CA 404 1_555 I O HOH . A HOH 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc19 E CA CA . A CA 404 1_555 I O HOH . A HOH 705 8_457 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc20 F CA CA . A CA 405 1_555 I O HOH . A HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc21 F CA CA . A CA 405 1_555 I O HOH . A HOH 589 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc22 F CA CA . A CA 405 1_555 I O HOH . A HOH 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc23 F CA CA . A CA 405 1_555 I O HOH . A HOH 700 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y7X _atom_sites.fract_transf_matrix[1][1] 0.012366 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SB4 A 1 401 401 SB4 SB4 . C 3 CA A 1 402 1 CA CA . D 3 CA A 1 403 2 CA CA . E 3 CA A 1 404 3 CA CA . F 3 CA A 1 405 4 CA CA . G 4 CL A 1 406 1 CL CL . H 5 OFQ A 1 407 1 OFQ 771 . I 6 HOH A 1 501 108 HOH HOH . I 6 HOH A 2 502 218 HOH HOH . I 6 HOH A 3 503 12 HOH HOH . I 6 HOH A 4 504 80 HOH HOH . I 6 HOH A 5 505 39 HOH HOH . I 6 HOH A 6 506 154 HOH HOH . I 6 HOH A 7 507 204 HOH HOH . I 6 HOH A 8 508 72 HOH HOH . I 6 HOH A 9 509 222 HOH HOH . I 6 HOH A 10 510 226 HOH HOH . I 6 HOH A 11 511 91 HOH HOH . I 6 HOH A 12 512 31 HOH HOH . I 6 HOH A 13 513 89 HOH HOH . I 6 HOH A 14 514 219 HOH HOH . I 6 HOH A 15 515 212 HOH HOH . I 6 HOH A 16 516 6 HOH HOH . I 6 HOH A 17 517 57 HOH HOH . I 6 HOH A 18 518 131 HOH HOH . I 6 HOH A 19 519 175 HOH HOH . I 6 HOH A 20 520 254 HOH HOH . I 6 HOH A 21 521 106 HOH HOH . I 6 HOH A 22 522 118 HOH HOH . I 6 HOH A 23 523 82 HOH HOH . I 6 HOH A 24 524 187 HOH HOH . I 6 HOH A 25 525 50 HOH HOH . I 6 HOH A 26 526 104 HOH HOH . I 6 HOH A 27 527 107 HOH HOH . I 6 HOH A 28 528 184 HOH HOH . I 6 HOH A 29 529 245 HOH HOH . I 6 HOH A 30 530 178 HOH HOH . I 6 HOH A 31 531 170 HOH HOH . I 6 HOH A 32 532 109 HOH HOH . I 6 HOH A 33 533 4 HOH HOH . I 6 HOH A 34 534 152 HOH HOH . I 6 HOH A 35 535 220 HOH HOH . I 6 HOH A 36 536 248 HOH HOH . I 6 HOH A 37 537 25 HOH HOH . I 6 HOH A 38 538 115 HOH HOH . I 6 HOH A 39 539 225 HOH HOH . I 6 HOH A 40 540 217 HOH HOH . I 6 HOH A 41 541 133 HOH HOH . I 6 HOH A 42 542 23 HOH HOH . I 6 HOH A 43 543 127 HOH HOH . I 6 HOH A 44 544 138 HOH HOH . I 6 HOH A 45 545 136 HOH HOH . I 6 HOH A 46 546 143 HOH HOH . I 6 HOH A 47 547 203 HOH HOH . I 6 HOH A 48 548 86 HOH HOH . I 6 HOH A 49 549 1 HOH HOH . I 6 HOH A 50 550 54 HOH HOH . I 6 HOH A 51 551 164 HOH HOH . I 6 HOH A 52 552 236 HOH HOH . I 6 HOH A 53 553 21 HOH HOH . I 6 HOH A 54 554 14 HOH HOH . I 6 HOH A 55 555 5 HOH HOH . I 6 HOH A 56 556 242 HOH HOH . I 6 HOH A 57 557 233 HOH HOH . I 6 HOH A 58 558 75 HOH HOH . I 6 HOH A 59 559 37 HOH HOH . I 6 HOH A 60 560 114 HOH HOH . I 6 HOH A 61 561 132 HOH HOH . I 6 HOH A 62 562 32 HOH HOH . I 6 HOH A 63 563 30 HOH HOH . I 6 HOH A 64 564 250 HOH HOH . I 6 HOH A 65 565 64 HOH HOH . I 6 HOH A 66 566 224 HOH HOH . I 6 HOH A 67 567 3 HOH HOH . I 6 HOH A 68 568 145 HOH HOH . I 6 HOH A 69 569 17 HOH HOH . I 6 HOH A 70 570 125 HOH HOH . I 6 HOH A 71 571 22 HOH HOH . I 6 HOH A 72 572 129 HOH HOH . I 6 HOH A 73 573 98 HOH HOH . I 6 HOH A 74 574 36 HOH HOH . I 6 HOH A 75 575 126 HOH HOH . I 6 HOH A 76 576 147 HOH HOH . I 6 HOH A 77 577 142 HOH HOH . I 6 HOH A 78 578 137 HOH HOH . I 6 HOH A 79 579 15 HOH HOH . I 6 HOH A 80 580 153 HOH HOH . I 6 HOH A 81 581 66 HOH HOH . I 6 HOH A 82 582 209 HOH HOH . I 6 HOH A 83 583 156 HOH HOH . I 6 HOH A 84 584 33 HOH HOH . I 6 HOH A 85 585 259 HOH HOH . I 6 HOH A 86 586 176 HOH HOH . I 6 HOH A 87 587 8 HOH HOH . I 6 HOH A 88 588 238 HOH HOH . I 6 HOH A 89 589 229 HOH HOH . I 6 HOH A 90 590 174 HOH HOH . I 6 HOH A 91 591 24 HOH HOH . I 6 HOH A 92 592 94 HOH HOH . I 6 HOH A 93 593 256 HOH HOH . I 6 HOH A 94 594 116 HOH HOH . I 6 HOH A 95 595 59 HOH HOH . I 6 HOH A 96 596 10 HOH HOH . I 6 HOH A 97 597 105 HOH HOH . I 6 HOH A 98 598 157 HOH HOH . I 6 HOH A 99 599 56 HOH HOH . I 6 HOH A 100 600 155 HOH HOH . I 6 HOH A 101 601 55 HOH HOH . I 6 HOH A 102 602 146 HOH HOH . I 6 HOH A 103 603 61 HOH HOH . I 6 HOH A 104 604 68 HOH HOH . I 6 HOH A 105 605 130 HOH HOH . I 6 HOH A 106 606 207 HOH HOH . I 6 HOH A 107 607 158 HOH HOH . I 6 HOH A 108 608 128 HOH HOH . I 6 HOH A 109 609 247 HOH HOH . I 6 HOH A 110 610 166 HOH HOH . I 6 HOH A 111 611 28 HOH HOH . I 6 HOH A 112 612 83 HOH HOH . I 6 HOH A 113 613 88 HOH HOH . I 6 HOH A 114 614 214 HOH HOH . I 6 HOH A 115 615 186 HOH HOH . I 6 HOH A 116 616 227 HOH HOH . I 6 HOH A 117 617 244 HOH HOH . I 6 HOH A 118 618 179 HOH HOH . I 6 HOH A 119 619 74 HOH HOH . I 6 HOH A 120 620 100 HOH HOH . I 6 HOH A 121 621 181 HOH HOH . I 6 HOH A 122 622 58 HOH HOH . I 6 HOH A 123 623 73 HOH HOH . I 6 HOH A 124 624 18 HOH HOH . I 6 HOH A 125 625 90 HOH HOH . I 6 HOH A 126 626 241 HOH HOH . I 6 HOH A 127 627 150 HOH HOH . I 6 HOH A 128 628 208 HOH HOH . I 6 HOH A 129 629 111 HOH HOH . I 6 HOH A 130 630 237 HOH HOH . I 6 HOH A 131 631 124 HOH HOH . I 6 HOH A 132 632 70 HOH HOH . I 6 HOH A 133 633 135 HOH HOH . I 6 HOH A 134 634 122 HOH HOH . I 6 HOH A 135 635 169 HOH HOH . I 6 HOH A 136 636 144 HOH HOH . I 6 HOH A 137 637 159 HOH HOH . I 6 HOH A 138 638 46 HOH HOH . I 6 HOH A 139 639 177 HOH HOH . I 6 HOH A 140 640 16 HOH HOH . I 6 HOH A 141 641 60 HOH HOH . I 6 HOH A 142 642 211 HOH HOH . I 6 HOH A 143 643 44 HOH HOH . I 6 HOH A 144 644 213 HOH HOH . I 6 HOH A 145 645 121 HOH HOH . I 6 HOH A 146 646 51 HOH HOH . I 6 HOH A 147 647 52 HOH HOH . I 6 HOH A 148 648 253 HOH HOH . I 6 HOH A 149 649 112 HOH HOH . I 6 HOH A 150 650 210 HOH HOH . I 6 HOH A 151 651 252 HOH HOH . I 6 HOH A 152 652 165 HOH HOH . I 6 HOH A 153 653 192 HOH HOH . I 6 HOH A 154 654 182 HOH HOH . I 6 HOH A 155 655 96 HOH HOH . I 6 HOH A 156 656 162 HOH HOH . I 6 HOH A 157 657 188 HOH HOH . I 6 HOH A 158 658 240 HOH HOH . I 6 HOH A 159 659 199 HOH HOH . I 6 HOH A 160 660 43 HOH HOH . I 6 HOH A 161 661 172 HOH HOH . I 6 HOH A 162 662 81 HOH HOH . I 6 HOH A 163 663 26 HOH HOH . I 6 HOH A 164 664 41 HOH HOH . I 6 HOH A 165 665 103 HOH HOH . I 6 HOH A 166 666 77 HOH HOH . I 6 HOH A 167 667 148 HOH HOH . I 6 HOH A 168 668 193 HOH HOH . I 6 HOH A 169 669 168 HOH HOH . I 6 HOH A 170 670 102 HOH HOH . I 6 HOH A 171 671 235 HOH HOH . I 6 HOH A 172 672 163 HOH HOH . I 6 HOH A 173 673 261 HOH HOH . I 6 HOH A 174 674 123 HOH HOH . I 6 HOH A 175 675 195 HOH HOH . I 6 HOH A 176 676 13 HOH HOH . I 6 HOH A 177 677 134 HOH HOH . I 6 HOH A 178 678 197 HOH HOH . I 6 HOH A 179 679 171 HOH HOH . I 6 HOH A 180 680 190 HOH HOH . I 6 HOH A 181 681 71 HOH HOH . I 6 HOH A 182 682 7 HOH HOH . I 6 HOH A 183 683 260 HOH HOH . I 6 HOH A 184 684 262 HOH HOH . I 6 HOH A 185 685 198 HOH HOH . I 6 HOH A 186 686 140 HOH HOH . I 6 HOH A 187 687 29 HOH HOH . I 6 HOH A 188 688 234 HOH HOH . I 6 HOH A 189 689 151 HOH HOH . I 6 HOH A 190 690 161 HOH HOH . I 6 HOH A 191 691 99 HOH HOH . I 6 HOH A 192 692 67 HOH HOH . I 6 HOH A 193 693 85 HOH HOH . I 6 HOH A 194 694 180 HOH HOH . I 6 HOH A 195 695 149 HOH HOH . I 6 HOH A 196 696 95 HOH HOH . I 6 HOH A 197 697 202 HOH HOH . I 6 HOH A 198 698 97 HOH HOH . I 6 HOH A 199 699 206 HOH HOH . I 6 HOH A 200 700 20 HOH HOH . I 6 HOH A 201 701 139 HOH HOH . I 6 HOH A 202 702 2 HOH HOH . I 6 HOH A 203 703 191 HOH HOH . I 6 HOH A 204 704 249 HOH HOH . I 6 HOH A 205 705 11 HOH HOH . I 6 HOH A 206 706 117 HOH HOH . I 6 HOH A 207 707 223 HOH HOH . I 6 HOH A 208 708 263 HOH HOH . I 6 HOH A 209 709 215 HOH HOH . I 6 HOH A 210 710 9 HOH HOH . I 6 HOH A 211 711 62 HOH HOH . I 6 HOH A 212 712 167 HOH HOH . I 6 HOH A 213 713 160 HOH HOH . I 6 HOH A 214 714 78 HOH HOH . I 6 HOH A 215 715 189 HOH HOH . I 6 HOH A 216 716 87 HOH HOH . I 6 HOH A 217 717 110 HOH HOH . I 6 HOH A 218 718 173 HOH HOH . I 6 HOH A 219 719 200 HOH HOH . I 6 HOH A 220 720 196 HOH HOH . I 6 HOH A 221 721 19 HOH HOH . I 6 HOH A 222 722 120 HOH HOH . I 6 HOH A 223 723 27 HOH HOH . I 6 HOH A 224 724 232 HOH HOH . I 6 HOH A 225 725 119 HOH HOH . I 6 HOH A 226 726 48 HOH HOH . I 6 HOH A 227 727 49 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -2.134 _atom_site.Cartn_y -4.728 _atom_site.Cartn_z 129.084 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #