data_6Y81 # _model_server_result.job_id yR4WwibCcxqL87ljqXlykw _model_server_result.datetime_utc '2024-10-18 15:22:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6Y81 # _exptl.entry_id 6Y81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y81 _cell.length_a 80.818 _cell.length_b 102.35 _cell.length_c 104.261 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 81 A GLU 81 1_555 C CA CA . A CA 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 A OE2 GLU 81 A GLU 81 1_555 C CA CA . A CA 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.121 ? metalc ? metalc3 A OD1 ASP 283 A ASP 283 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc4 A OD2 ASP 313 A ASP 313 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc5 A OD2 ASP 315 A ASP 315 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc6 A OD1 ASP 316 A ASP 316 1_555 C CA CA . A CA 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? metalc ? metalc7 A OD2 ASP 316 A ASP 316 1_555 C CA CA . A CA 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc8 A OD1 ASP 354 A ASP 354 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc9 A OD2 ASP 354 A ASP 354 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc10 A O ASP 354 A ASP 354 1_555 D CA CA . A CA 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc11 A O GLU 356 A GLU 356 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc12 A OE2 GLU 359 A GLU 359 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc13 C CA CA . A CA 402 1_555 N O HOH . A HOH 568 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc14 C CA CA . A CA 402 1_555 N O HOH . A HOH 569 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc15 D CA CA . A CA 403 1_555 N O HOH . A HOH 513 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc16 D CA CA . A CA 403 1_555 N O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc17 D CA CA . A CA 403 1_555 N O HOH . A HOH 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc18 D CA CA . A CA 403 1_555 N O HOH . A HOH 694 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc19 E CA CA . A CA 404 1_555 N O HOH . A HOH 501 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? metalc ? metalc20 E CA CA . A CA 404 1_555 N O HOH . A HOH 653 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc21 E CA CA . A CA 404 1_555 N O HOH . A HOH 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc22 F CA CA . A CA 405 1_555 N O HOH . A HOH 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc23 F CA CA . A CA 405 1_555 N O HOH . A HOH 580 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc24 F CA CA . A CA 405 1_555 N O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc25 F CA CA . A CA 405 1_555 N O HOH . A HOH 637 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y81 _atom_sites.fract_transf_matrix[1][1] 0.012373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SB4 A 1 401 401 SB4 SB4 . C 3 CA A 1 402 1 CA CA . D 3 CA A 1 403 2 CA CA . E 3 CA A 1 404 3 CA CA . F 3 CA A 1 405 4 CA CA . G 3 CA A 1 406 5 CA CA . H 3 CA A 1 407 6 CA CA . I 4 CL A 1 408 3 CL CL . J 4 CL A 1 409 5 CL CL . K 5 DMS A 1 410 2 DMS DMS . L 6 EDO A 1 411 1 EDO EDO . M 7 OG5 A 1 412 1 OG5 A88 . N 8 HOH A 1 501 10 HOH HOH . N 8 HOH A 2 502 93 HOH HOH . N 8 HOH A 3 503 12 HOH HOH . N 8 HOH A 4 504 149 HOH HOH . N 8 HOH A 5 505 118 HOH HOH . N 8 HOH A 6 506 221 HOH HOH . N 8 HOH A 7 507 219 HOH HOH . N 8 HOH A 8 508 68 HOH HOH . N 8 HOH A 9 509 188 HOH HOH . N 8 HOH A 10 510 31 HOH HOH . N 8 HOH A 11 511 78 HOH HOH . N 8 HOH A 12 512 6 HOH HOH . N 8 HOH A 13 513 1 HOH HOH . N 8 HOH A 14 514 220 HOH HOH . N 8 HOH A 15 515 163 HOH HOH . N 8 HOH A 16 516 73 HOH HOH . N 8 HOH A 17 517 164 HOH HOH . N 8 HOH A 18 518 57 HOH HOH . N 8 HOH A 19 519 132 HOH HOH . N 8 HOH A 20 520 131 HOH HOH . N 8 HOH A 21 521 183 HOH HOH . N 8 HOH A 22 522 101 HOH HOH . N 8 HOH A 23 523 202 HOH HOH . N 8 HOH A 24 524 135 HOH HOH . N 8 HOH A 25 525 200 HOH HOH . N 8 HOH A 26 526 17 HOH HOH . N 8 HOH A 27 527 21 HOH HOH . N 8 HOH A 28 528 194 HOH HOH . N 8 HOH A 29 529 15 HOH HOH . N 8 HOH A 30 530 49 HOH HOH . N 8 HOH A 31 531 209 HOH HOH . N 8 HOH A 32 532 96 HOH HOH . N 8 HOH A 33 533 166 HOH HOH . N 8 HOH A 34 534 206 HOH HOH . N 8 HOH A 35 535 168 HOH HOH . N 8 HOH A 36 536 35 HOH HOH . N 8 HOH A 37 537 179 HOH HOH . N 8 HOH A 38 538 157 HOH HOH . N 8 HOH A 39 539 63 HOH HOH . N 8 HOH A 40 540 103 HOH HOH . N 8 HOH A 41 541 18 HOH HOH . N 8 HOH A 42 542 161 HOH HOH . N 8 HOH A 43 543 19 HOH HOH . N 8 HOH A 44 544 97 HOH HOH . N 8 HOH A 45 545 48 HOH HOH . N 8 HOH A 46 546 40 HOH HOH . N 8 HOH A 47 547 148 HOH HOH . N 8 HOH A 48 548 26 HOH HOH . N 8 HOH A 49 549 38 HOH HOH . N 8 HOH A 50 550 30 HOH HOH . N 8 HOH A 51 551 60 HOH HOH . N 8 HOH A 52 552 55 HOH HOH . N 8 HOH A 53 553 84 HOH HOH . N 8 HOH A 54 554 216 HOH HOH . N 8 HOH A 55 555 177 HOH HOH . N 8 HOH A 56 556 109 HOH HOH . N 8 HOH A 57 557 139 HOH HOH . N 8 HOH A 58 558 205 HOH HOH . N 8 HOH A 59 559 130 HOH HOH . N 8 HOH A 60 560 95 HOH HOH . N 8 HOH A 61 561 129 HOH HOH . N 8 HOH A 62 562 152 HOH HOH . N 8 HOH A 63 563 25 HOH HOH . N 8 HOH A 64 564 102 HOH HOH . N 8 HOH A 65 565 117 HOH HOH . N 8 HOH A 66 566 184 HOH HOH . N 8 HOH A 67 567 74 HOH HOH . N 8 HOH A 68 568 5 HOH HOH . N 8 HOH A 69 569 4 HOH HOH . N 8 HOH A 70 570 46 HOH HOH . N 8 HOH A 71 571 3 HOH HOH . N 8 HOH A 72 572 99 HOH HOH . N 8 HOH A 73 573 106 HOH HOH . N 8 HOH A 74 574 175 HOH HOH . N 8 HOH A 75 575 87 HOH HOH . N 8 HOH A 76 576 154 HOH HOH . N 8 HOH A 77 577 218 HOH HOH . N 8 HOH A 78 578 180 HOH HOH . N 8 HOH A 79 579 189 HOH HOH . N 8 HOH A 80 580 217 HOH HOH . N 8 HOH A 81 581 71 HOH HOH . N 8 HOH A 82 582 24 HOH HOH . N 8 HOH A 83 583 58 HOH HOH . N 8 HOH A 84 584 13 HOH HOH . N 8 HOH A 85 585 104 HOH HOH . N 8 HOH A 86 586 27 HOH HOH . N 8 HOH A 87 587 100 HOH HOH . N 8 HOH A 88 588 112 HOH HOH . N 8 HOH A 89 589 227 HOH HOH . N 8 HOH A 90 590 50 HOH HOH . N 8 HOH A 91 591 36 HOH HOH . N 8 HOH A 92 592 110 HOH HOH . N 8 HOH A 93 593 39 HOH HOH . N 8 HOH A 94 594 52 HOH HOH . N 8 HOH A 95 595 185 HOH HOH . N 8 HOH A 96 596 178 HOH HOH . N 8 HOH A 97 597 105 HOH HOH . N 8 HOH A 98 598 33 HOH HOH . N 8 HOH A 99 599 108 HOH HOH . N 8 HOH A 100 600 121 HOH HOH . N 8 HOH A 101 601 191 HOH HOH . N 8 HOH A 102 602 171 HOH HOH . N 8 HOH A 103 603 136 HOH HOH . N 8 HOH A 104 604 111 HOH HOH . N 8 HOH A 105 605 42 HOH HOH . N 8 HOH A 106 606 120 HOH HOH . N 8 HOH A 107 607 43 HOH HOH . N 8 HOH A 108 608 51 HOH HOH . N 8 HOH A 109 609 98 HOH HOH . N 8 HOH A 110 610 140 HOH HOH . N 8 HOH A 111 611 159 HOH HOH . N 8 HOH A 112 612 204 HOH HOH . N 8 HOH A 113 613 20 HOH HOH . N 8 HOH A 114 614 7 HOH HOH . N 8 HOH A 115 615 115 HOH HOH . N 8 HOH A 116 616 89 HOH HOH . N 8 HOH A 117 617 167 HOH HOH . N 8 HOH A 118 618 69 HOH HOH . N 8 HOH A 119 619 119 HOH HOH . N 8 HOH A 120 620 94 HOH HOH . N 8 HOH A 121 621 128 HOH HOH . N 8 HOH A 122 622 172 HOH HOH . N 8 HOH A 123 623 174 HOH HOH . N 8 HOH A 124 624 176 HOH HOH . N 8 HOH A 125 625 158 HOH HOH . N 8 HOH A 126 626 29 HOH HOH . N 8 HOH A 127 627 181 HOH HOH . N 8 HOH A 128 628 134 HOH HOH . N 8 HOH A 129 629 72 HOH HOH . N 8 HOH A 130 630 147 HOH HOH . N 8 HOH A 131 631 208 HOH HOH . N 8 HOH A 132 632 156 HOH HOH . N 8 HOH A 133 633 22 HOH HOH . N 8 HOH A 134 634 226 HOH HOH . N 8 HOH A 135 635 44 HOH HOH . N 8 HOH A 136 636 137 HOH HOH . N 8 HOH A 137 637 16 HOH HOH . N 8 HOH A 138 638 126 HOH HOH . N 8 HOH A 139 639 122 HOH HOH . N 8 HOH A 140 640 229 HOH HOH . N 8 HOH A 141 641 138 HOH HOH . N 8 HOH A 142 642 14 HOH HOH . N 8 HOH A 143 643 228 HOH HOH . N 8 HOH A 144 644 187 HOH HOH . N 8 HOH A 145 645 133 HOH HOH . N 8 HOH A 146 646 47 HOH HOH . N 8 HOH A 147 647 212 HOH HOH . N 8 HOH A 148 648 62 HOH HOH . N 8 HOH A 149 649 230 HOH HOH . N 8 HOH A 150 650 67 HOH HOH . N 8 HOH A 151 651 170 HOH HOH . N 8 HOH A 152 652 210 HOH HOH . N 8 HOH A 153 653 190 HOH HOH . N 8 HOH A 154 654 53 HOH HOH . N 8 HOH A 155 655 86 HOH HOH . N 8 HOH A 156 656 125 HOH HOH . N 8 HOH A 157 657 45 HOH HOH . N 8 HOH A 158 658 41 HOH HOH . N 8 HOH A 159 659 11 HOH HOH . N 8 HOH A 160 660 64 HOH HOH . N 8 HOH A 161 661 215 HOH HOH . N 8 HOH A 162 662 65 HOH HOH . N 8 HOH A 163 663 145 HOH HOH . N 8 HOH A 164 664 186 HOH HOH . N 8 HOH A 165 665 201 HOH HOH . N 8 HOH A 166 666 80 HOH HOH . N 8 HOH A 167 667 75 HOH HOH . N 8 HOH A 168 668 169 HOH HOH . N 8 HOH A 169 669 124 HOH HOH . N 8 HOH A 170 670 143 HOH HOH . N 8 HOH A 171 671 113 HOH HOH . N 8 HOH A 172 672 59 HOH HOH . N 8 HOH A 173 673 173 HOH HOH . N 8 HOH A 174 674 114 HOH HOH . N 8 HOH A 175 675 116 HOH HOH . N 8 HOH A 176 676 151 HOH HOH . N 8 HOH A 177 677 198 HOH HOH . N 8 HOH A 178 678 56 HOH HOH . N 8 HOH A 179 679 155 HOH HOH . N 8 HOH A 180 680 37 HOH HOH . N 8 HOH A 181 681 107 HOH HOH . N 8 HOH A 182 682 9 HOH HOH . N 8 HOH A 183 683 82 HOH HOH . N 8 HOH A 184 684 88 HOH HOH . N 8 HOH A 185 685 225 HOH HOH . N 8 HOH A 186 686 144 HOH HOH . N 8 HOH A 187 687 196 HOH HOH . N 8 HOH A 188 688 85 HOH HOH . N 8 HOH A 189 689 182 HOH HOH . N 8 HOH A 190 690 192 HOH HOH . N 8 HOH A 191 691 142 HOH HOH . N 8 HOH A 192 692 92 HOH HOH . N 8 HOH A 193 693 153 HOH HOH . N 8 HOH A 194 694 2 HOH HOH . N 8 HOH A 195 695 66 HOH HOH . N 8 HOH A 196 696 162 HOH HOH . N 8 HOH A 197 697 197 HOH HOH . N 8 HOH A 198 698 160 HOH HOH . N 8 HOH A 199 699 83 HOH HOH . N 8 HOH A 200 700 91 HOH HOH . N 8 HOH A 201 701 150 HOH HOH . N 8 HOH A 202 702 123 HOH HOH . N 8 HOH A 203 703 127 HOH HOH . N 8 HOH A 204 704 207 HOH HOH . N 8 HOH A 205 705 193 HOH HOH . N 8 HOH A 206 706 54 HOH HOH . N 8 HOH A 207 707 76 HOH HOH . N 8 HOH A 208 708 146 HOH HOH . N 8 HOH A 209 709 213 HOH HOH . N 8 HOH A 210 710 28 HOH HOH . N 8 HOH A 211 711 90 HOH HOH . N 8 HOH A 212 712 8 HOH HOH . N 8 HOH A 213 713 32 HOH HOH . N 8 HOH A 214 714 211 HOH HOH . N 8 HOH A 215 715 70 HOH HOH . N 8 HOH A 216 716 61 HOH HOH . N 8 HOH A 217 717 81 HOH HOH . N 8 HOH A 218 718 223 HOH HOH . N 8 HOH A 219 719 199 HOH HOH . N 8 HOH A 220 720 214 HOH HOH . N 8 HOH A 221 721 23 HOH HOH . N 8 HOH A 222 722 77 HOH HOH . N 8 HOH A 223 723 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -2.372 _atom_site.Cartn_y 7.787 _atom_site.Cartn_z 139.067 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #