data_6Y82 # _model_server_result.job_id lVq7U-qJe1yaX1QcytyO3g _model_server_result.datetime_utc '2025-01-10 16:12:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6Y82 # _exptl.entry_id 6Y82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y82 _cell.length_a 80.918 _cell.length_b 102.289 _cell.length_c 102.944 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 81 A GLU 81 1_555 C CA CA . A CA 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc2 A OE2 GLU 81 A GLU 81 1_555 C CA CA . A CA 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc3 A OD2 ASP 313 A ASP 313 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc4 A OD1 ASP 315 A ASP 315 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc5 A OD1 ASP 316 A ASP 316 1_555 C CA CA . A CA 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? metalc ? metalc6 A OD2 ASP 316 A ASP 316 1_555 C CA CA . A CA 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc7 A OD1 ASP 354 A ASP 354 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc8 A OD2 ASP 354 A ASP 354 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc9 A O ASP 354 A ASP 354 1_555 D CA CA . A CA 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc10 A O GLU 356 A GLU 356 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc11 A OE2 GLU 359 A GLU 359 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc12 C CA CA . A CA 402 1_555 H O HOH . A HOH 558 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc13 C CA CA . A CA 402 1_555 H O HOH . A HOH 614 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc14 D CA CA . A CA 403 1_555 H O HOH . A HOH 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc15 D CA CA . A CA 403 1_555 H O HOH . A HOH 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc16 D CA CA . A CA 403 1_555 H O HOH . A HOH 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc17 D CA CA . A CA 403 1_555 H O HOH . A HOH 697 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc18 E CA CA . A CA 404 1_555 H O HOH . A HOH 508 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc19 E CA CA . A CA 404 1_555 H O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc20 F CA CA . A CA 405 1_555 H O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc21 F CA CA . A CA 405 1_555 H O HOH . A HOH 610 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc22 F CA CA . A CA 405 1_555 H O HOH . A HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc23 F CA CA . A CA 405 1_555 H O HOH . A HOH 663 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y82 _atom_sites.fract_transf_matrix[1][1] 0.012358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SB4 A 1 401 401 SB4 SB4 . C 3 CA A 1 402 1 CA CA . D 3 CA A 1 403 2 CA CA . E 3 CA A 1 404 3 CA CA . F 3 CA A 1 405 4 CA CA . G 4 308 A 1 406 2 308 804 . H 5 HOH A 1 501 68 HOH HOH . H 5 HOH A 2 502 38 HOH HOH . H 5 HOH A 3 503 184 HOH HOH . H 5 HOH A 4 504 156 HOH HOH . H 5 HOH A 5 505 300 HOH HOH . H 5 HOH A 6 506 274 HOH HOH . H 5 HOH A 7 507 72 HOH HOH . H 5 HOH A 8 508 13 HOH HOH . H 5 HOH A 9 509 226 HOH HOH . H 5 HOH A 10 510 92 HOH HOH . H 5 HOH A 11 511 101 HOH HOH . H 5 HOH A 12 512 232 HOH HOH . H 5 HOH A 13 513 46 HOH HOH . H 5 HOH A 14 514 191 HOH HOH . H 5 HOH A 15 515 231 HOH HOH . H 5 HOH A 16 516 121 HOH HOH . H 5 HOH A 17 517 64 HOH HOH . H 5 HOH A 18 518 182 HOH HOH . H 5 HOH A 19 519 185 HOH HOH . H 5 HOH A 20 520 96 HOH HOH . H 5 HOH A 21 521 170 HOH HOH . H 5 HOH A 22 522 297 HOH HOH . H 5 HOH A 23 523 82 HOH HOH . H 5 HOH A 24 524 189 HOH HOH . H 5 HOH A 25 525 139 HOH HOH . H 5 HOH A 26 526 15 HOH HOH . H 5 HOH A 27 527 246 HOH HOH . H 5 HOH A 28 528 105 HOH HOH . H 5 HOH A 29 529 214 HOH HOH . H 5 HOH A 30 530 145 HOH HOH . H 5 HOH A 31 531 142 HOH HOH . H 5 HOH A 32 532 77 HOH HOH . H 5 HOH A 33 533 241 HOH HOH . H 5 HOH A 34 534 151 HOH HOH . H 5 HOH A 35 535 97 HOH HOH . H 5 HOH A 36 536 190 HOH HOH . H 5 HOH A 37 537 23 HOH HOH . H 5 HOH A 38 538 36 HOH HOH . H 5 HOH A 39 539 178 HOH HOH . H 5 HOH A 40 540 80 HOH HOH . H 5 HOH A 41 541 197 HOH HOH . H 5 HOH A 42 542 205 HOH HOH . H 5 HOH A 43 543 91 HOH HOH . H 5 HOH A 44 544 51 HOH HOH . H 5 HOH A 45 545 228 HOH HOH . H 5 HOH A 46 546 74 HOH HOH . H 5 HOH A 47 547 49 HOH HOH . H 5 HOH A 48 548 284 HOH HOH . H 5 HOH A 49 549 25 HOH HOH . H 5 HOH A 50 550 21 HOH HOH . H 5 HOH A 51 551 233 HOH HOH . H 5 HOH A 52 552 169 HOH HOH . H 5 HOH A 53 553 99 HOH HOH . H 5 HOH A 54 554 119 HOH HOH . H 5 HOH A 55 555 32 HOH HOH . H 5 HOH A 56 556 67 HOH HOH . H 5 HOH A 57 557 75 HOH HOH . H 5 HOH A 58 558 4 HOH HOH . H 5 HOH A 59 559 18 HOH HOH . H 5 HOH A 60 560 207 HOH HOH . H 5 HOH A 61 561 204 HOH HOH . H 5 HOH A 62 562 100 HOH HOH . H 5 HOH A 63 563 208 HOH HOH . H 5 HOH A 64 564 88 HOH HOH . H 5 HOH A 65 565 137 HOH HOH . H 5 HOH A 66 566 103 HOH HOH . H 5 HOH A 67 567 110 HOH HOH . H 5 HOH A 68 568 296 HOH HOH . H 5 HOH A 69 569 52 HOH HOH . H 5 HOH A 70 570 22 HOH HOH . H 5 HOH A 71 571 33 HOH HOH . H 5 HOH A 72 572 216 HOH HOH . H 5 HOH A 73 573 79 HOH HOH . H 5 HOH A 74 574 275 HOH HOH . H 5 HOH A 75 575 112 HOH HOH . H 5 HOH A 76 576 19 HOH HOH . H 5 HOH A 77 577 113 HOH HOH . H 5 HOH A 78 578 69 HOH HOH . H 5 HOH A 79 579 30 HOH HOH . H 5 HOH A 80 580 1 HOH HOH . H 5 HOH A 81 581 106 HOH HOH . H 5 HOH A 82 582 3 HOH HOH . H 5 HOH A 83 583 146 HOH HOH . H 5 HOH A 84 584 107 HOH HOH . H 5 HOH A 85 585 202 HOH HOH . H 5 HOH A 86 586 131 HOH HOH . H 5 HOH A 87 587 54 HOH HOH . H 5 HOH A 88 588 90 HOH HOH . H 5 HOH A 89 589 157 HOH HOH . H 5 HOH A 90 590 24 HOH HOH . H 5 HOH A 91 591 35 HOH HOH . H 5 HOH A 92 592 95 HOH HOH . H 5 HOH A 93 593 122 HOH HOH . H 5 HOH A 94 594 219 HOH HOH . H 5 HOH A 95 595 153 HOH HOH . H 5 HOH A 96 596 109 HOH HOH . H 5 HOH A 97 597 249 HOH HOH . H 5 HOH A 98 598 120 HOH HOH . H 5 HOH A 99 599 265 HOH HOH . H 5 HOH A 100 600 98 HOH HOH . H 5 HOH A 101 601 239 HOH HOH . H 5 HOH A 102 602 11 HOH HOH . H 5 HOH A 103 603 136 HOH HOH . H 5 HOH A 104 604 55 HOH HOH . H 5 HOH A 105 605 123 HOH HOH . H 5 HOH A 106 606 175 HOH HOH . H 5 HOH A 107 607 16 HOH HOH . H 5 HOH A 108 608 199 HOH HOH . H 5 HOH A 109 609 173 HOH HOH . H 5 HOH A 110 610 243 HOH HOH . H 5 HOH A 111 611 125 HOH HOH . H 5 HOH A 112 612 144 HOH HOH . H 5 HOH A 113 613 53 HOH HOH . H 5 HOH A 114 614 5 HOH HOH . H 5 HOH A 115 615 126 HOH HOH . H 5 HOH A 116 616 301 HOH HOH . H 5 HOH A 117 617 180 HOH HOH . H 5 HOH A 118 618 201 HOH HOH . H 5 HOH A 119 619 28 HOH HOH . H 5 HOH A 120 620 114 HOH HOH . H 5 HOH A 121 621 8 HOH HOH . H 5 HOH A 122 622 58 HOH HOH . H 5 HOH A 123 623 102 HOH HOH . H 5 HOH A 124 624 66 HOH HOH . H 5 HOH A 125 625 57 HOH HOH . H 5 HOH A 126 626 135 HOH HOH . H 5 HOH A 127 627 299 HOH HOH . H 5 HOH A 128 628 143 HOH HOH . H 5 HOH A 129 629 177 HOH HOH . H 5 HOH A 130 630 94 HOH HOH . H 5 HOH A 131 631 84 HOH HOH . H 5 HOH A 132 632 206 HOH HOH . H 5 HOH A 133 633 50 HOH HOH . H 5 HOH A 134 634 141 HOH HOH . H 5 HOH A 135 635 47 HOH HOH . H 5 HOH A 136 636 148 HOH HOH . H 5 HOH A 137 637 124 HOH HOH . H 5 HOH A 138 638 117 HOH HOH . H 5 HOH A 139 639 133 HOH HOH . H 5 HOH A 140 640 168 HOH HOH . H 5 HOH A 141 641 62 HOH HOH . H 5 HOH A 142 642 81 HOH HOH . H 5 HOH A 143 643 65 HOH HOH . H 5 HOH A 144 644 176 HOH HOH . H 5 HOH A 145 645 236 HOH HOH . H 5 HOH A 146 646 187 HOH HOH . H 5 HOH A 147 647 104 HOH HOH . H 5 HOH A 148 648 111 HOH HOH . H 5 HOH A 149 649 147 HOH HOH . H 5 HOH A 150 650 60 HOH HOH . H 5 HOH A 151 651 132 HOH HOH . H 5 HOH A 152 652 40 HOH HOH . H 5 HOH A 153 653 48 HOH HOH . H 5 HOH A 154 654 198 HOH HOH . H 5 HOH A 155 655 179 HOH HOH . H 5 HOH A 156 656 17 HOH HOH . H 5 HOH A 157 657 159 HOH HOH . H 5 HOH A 158 658 129 HOH HOH . H 5 HOH A 159 659 242 HOH HOH . H 5 HOH A 160 660 14 HOH HOH . H 5 HOH A 161 661 227 HOH HOH . H 5 HOH A 162 662 26 HOH HOH . H 5 HOH A 163 663 20 HOH HOH . H 5 HOH A 164 664 220 HOH HOH . H 5 HOH A 165 665 195 HOH HOH . H 5 HOH A 166 666 76 HOH HOH . H 5 HOH A 167 667 86 HOH HOH . H 5 HOH A 168 668 270 HOH HOH . H 5 HOH A 169 669 154 HOH HOH . H 5 HOH A 170 670 150 HOH HOH . H 5 HOH A 171 671 152 HOH HOH . H 5 HOH A 172 672 222 HOH HOH . H 5 HOH A 173 673 59 HOH HOH . H 5 HOH A 174 674 115 HOH HOH . H 5 HOH A 175 675 298 HOH HOH . H 5 HOH A 176 676 7 HOH HOH . H 5 HOH A 177 677 212 HOH HOH . H 5 HOH A 178 678 263 HOH HOH . H 5 HOH A 179 679 238 HOH HOH . H 5 HOH A 180 680 164 HOH HOH . H 5 HOH A 181 681 213 HOH HOH . H 5 HOH A 182 682 196 HOH HOH . H 5 HOH A 183 683 295 HOH HOH . H 5 HOH A 184 684 73 HOH HOH . H 5 HOH A 185 685 163 HOH HOH . H 5 HOH A 186 686 149 HOH HOH . H 5 HOH A 187 687 89 HOH HOH . H 5 HOH A 188 688 158 HOH HOH . H 5 HOH A 189 689 172 HOH HOH . H 5 HOH A 190 690 118 HOH HOH . H 5 HOH A 191 691 108 HOH HOH . H 5 HOH A 192 692 285 HOH HOH . H 5 HOH A 193 693 277 HOH HOH . H 5 HOH A 194 694 245 HOH HOH . H 5 HOH A 195 695 264 HOH HOH . H 5 HOH A 196 696 294 HOH HOH . H 5 HOH A 197 697 2 HOH HOH . H 5 HOH A 198 698 63 HOH HOH . H 5 HOH A 199 699 181 HOH HOH . H 5 HOH A 200 700 283 HOH HOH . H 5 HOH A 201 701 171 HOH HOH . H 5 HOH A 202 702 87 HOH HOH . H 5 HOH A 203 703 186 HOH HOH . H 5 HOH A 204 704 85 HOH HOH . H 5 HOH A 205 705 192 HOH HOH . H 5 HOH A 206 706 134 HOH HOH . H 5 HOH A 207 707 127 HOH HOH . H 5 HOH A 208 708 155 HOH HOH . H 5 HOH A 209 709 70 HOH HOH . H 5 HOH A 210 710 224 HOH HOH . H 5 HOH A 211 711 78 HOH HOH . H 5 HOH A 212 712 262 HOH HOH . H 5 HOH A 213 713 10 HOH HOH . H 5 HOH A 214 714 166 HOH HOH . H 5 HOH A 215 715 162 HOH HOH . H 5 HOH A 216 716 292 HOH HOH . H 5 HOH A 217 717 93 HOH HOH . H 5 HOH A 218 718 291 HOH HOH . H 5 HOH A 219 719 240 HOH HOH . H 5 HOH A 220 720 27 HOH HOH . H 5 HOH A 221 721 248 HOH HOH . H 5 HOH A 222 722 44 HOH HOH . H 5 HOH A 223 723 45 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -2.291 _atom_site.Cartn_y 7.512 _atom_site.Cartn_z 137.206 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #