data_6Y8I # _model_server_result.job_id szEYeeETfUYF8cEgMZ08OQ _model_server_result.datetime_utc '2024-12-27 01:58:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6Y8I # _exptl.entry_id 6Y8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.088 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-bromanylpyridin-2-yl)-3-(2-hydroxyethyl)urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y8I _cell.length_a 54.79 _cell.length_b 54.79 _cell.length_c 75.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall 'P 4cw' _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H10 Br N3 O2' _chem_comp.formula_weight 260.088 _chem_comp.id OGE _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-bromanylpyridin-2-yl)-3-(2-hydroxyethyl)urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR C7 OGE sing 237 n n C5 C7 OGE doub 238 n y C5 C4 OGE sing 239 n y C7 C6 OGE sing 240 n y C4 C3 OGE doub 241 n y C6 N2 OGE doub 242 n y O1 C2 OGE doub 243 n n C3 N2 OGE sing 244 n y C3 N1 OGE sing 245 n n C2 N1 OGE sing 246 n n C2 N OGE sing 247 n n C1 N OGE sing 248 n n C1 C OGE sing 249 n n C O OGE sing 250 n n C1 H1 OGE sing 251 n n C1 H2 OGE sing 252 n n C4 H3 OGE sing 253 n n C5 H4 OGE sing 254 n n C6 H5 OGE sing 255 n n N1 H6 OGE sing 256 n n O H7 OGE sing 257 n n N H8 OGE sing 258 n n C H9 OGE sing 259 n n C H10 OGE sing 260 n n # _atom_sites.entry_id 6Y8I _atom_sites.fract_transf_matrix[1][1] 0.018252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 161 SO4 SO4 . C 3 OGE A 1 202 401 OGE I13 . D 4 HOH A 1 301 9 HOH HOH . D 4 HOH A 2 302 5 HOH HOH . D 4 HOH A 3 303 11 HOH HOH . D 4 HOH A 4 304 4 HOH HOH . D 4 HOH A 5 305 17 HOH HOH . D 4 HOH A 6 306 19 HOH HOH . D 4 HOH A 7 307 10 HOH HOH . D 4 HOH A 8 308 18 HOH HOH . D 4 HOH A 9 309 12 HOH HOH . D 4 HOH A 10 310 13 HOH HOH . D 4 HOH A 11 311 6 HOH HOH . D 4 HOH A 12 312 22 HOH HOH . D 4 HOH A 13 313 21 HOH HOH . D 4 HOH A 14 314 1 HOH HOH . D 4 HOH A 15 315 3 HOH HOH . D 4 HOH A 16 316 20 HOH HOH . D 4 HOH A 17 317 8 HOH HOH . D 4 HOH A 18 318 7 HOH HOH . D 4 HOH A 19 319 15 HOH HOH . D 4 HOH A 20 320 16 HOH HOH . D 4 HOH A 21 321 2 HOH HOH . D 4 HOH A 22 322 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OGE . . . C 3 3.453 24.736 7.029 0.71 50.01 ? C1 OGE 202 A 1 HETATM 2 C C2 OGE . . . C 3 5.759 25.549 6.766 0.71 36.86 ? C2 OGE 202 A 1 HETATM 3 C C3 OGE . . . C 3 8.253 25.798 6.504 0.71 31.41 ? C3 OGE 202 A 1 HETATM 4 C C4 OGE . . . C 3 8.349 27.126 6.067 0.71 30.2 ? C4 OGE 202 A 1 HETATM 5 C C5 OGE . . . C 3 9.58 27.586 5.638 0.71 29.53 ? C5 OGE 202 A 1 HETATM 6 C C6 OGE . . . C 3 10.48 25.428 6.099 0.71 28.5 ? C6 OGE 202 A 1 HETATM 7 C C7 OGE . . . C 3 10.651 26.724 5.664 0.71 28.11 ? C7 OGE 202 A 1 HETATM 8 N N1 OGE . . . C 3 7.069 25.195 6.95 0.71 29.57 ? N1 OGE 202 A 1 HETATM 9 N N2 OGE . . . C 3 9.301 24.962 6.519 0.71 29.02 ? N2 OGE 202 A 1 HETATM 10 O O1 OGE . . . C 3 5.413 26.545 6.137 0.71 39.72 ? O1 OGE 202 A 1 HETATM 11 O O OGE . . . C 3 2.757 23.416 8.966 0.71 44.02 ? O OGE 202 A 1 HETATM 12 N N OGE . . . C 3 4.877 24.697 7.332 0.71 39.57 ? N OGE 202 A 1 HETATM 13 C C OGE . . . C 3 2.607 24.648 8.273 0.71 54.61 ? C OGE 202 A 1 HETATM 14 BR BR OGE . . . C 3 12.372 27.342 5.162 0.71 34.78 ? BR OGE 202 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #