data_6Y8J # _model_server_result.job_id pPsLzyvFzaegzGvk4aBlgw _model_server_result.datetime_utc '2025-02-25 05:34:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6Y8J # _exptl.entry_id 6Y8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Y8J _cell.length_a 91.6 _cell.length_b 91.6 _cell.length_c 82.96 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -45.8 79.327927 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -91.6 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 106 A CYS 86 1_555 B FE2 FES . A FES 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc2 A ND1 HIS 108 A HIS 88 1_555 B FE1 FES . A FES 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A SG CYS 126 A CYS 106 1_555 B FE2 FES . A FES 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 A ND1 HIS 129 A HIS 109 1_555 B FE1 FES . A FES 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 83 n n FE1 S2 FES sing 84 n n FE2 S1 FES sing 85 n n FE2 S2 FES sing 86 n n # _atom_sites.entry_id 6Y8J _atom_sites.fract_transf_matrix[1][1] 0.010917 _atom_sites.fract_transf_matrix[1][2] 0.006303 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 401 481 FES FES . C 3 HOH A 1 501 33 HOH HOH . C 3 HOH A 2 502 13 HOH HOH . C 3 HOH A 3 503 1 HOH HOH . C 3 HOH A 4 504 51 HOH HOH . C 3 HOH A 5 505 42 HOH HOH . C 3 HOH A 6 506 5 HOH HOH . C 3 HOH A 7 507 49 HOH HOH . C 3 HOH A 8 508 65 HOH HOH . C 3 HOH A 9 509 46 HOH HOH . C 3 HOH A 10 510 11 HOH HOH . C 3 HOH A 11 511 15 HOH HOH . C 3 HOH A 12 512 45 HOH HOH . C 3 HOH A 13 513 21 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 31 HOH HOH . C 3 HOH A 16 516 64 HOH HOH . C 3 HOH A 17 517 9 HOH HOH . C 3 HOH A 18 518 26 HOH HOH . C 3 HOH A 19 519 16 HOH HOH . C 3 HOH A 20 520 34 HOH HOH . C 3 HOH A 21 521 53 HOH HOH . C 3 HOH A 22 522 43 HOH HOH . C 3 HOH A 23 523 55 HOH HOH . C 3 HOH A 24 524 37 HOH HOH . C 3 HOH A 25 525 35 HOH HOH . C 3 HOH A 26 526 7 HOH HOH . C 3 HOH A 27 527 17 HOH HOH . C 3 HOH A 28 528 22 HOH HOH . C 3 HOH A 29 529 44 HOH HOH . C 3 HOH A 30 530 59 HOH HOH . C 3 HOH A 31 531 12 HOH HOH . C 3 HOH A 32 532 23 HOH HOH . C 3 HOH A 33 533 4 HOH HOH . C 3 HOH A 34 534 10 HOH HOH . C 3 HOH A 35 535 2 HOH HOH . C 3 HOH A 36 536 6 HOH HOH . C 3 HOH A 37 537 61 HOH HOH . C 3 HOH A 38 538 52 HOH HOH . C 3 HOH A 39 539 18 HOH HOH . C 3 HOH A 40 540 30 HOH HOH . C 3 HOH A 41 541 20 HOH HOH . C 3 HOH A 42 542 24 HOH HOH . C 3 HOH A 43 543 27 HOH HOH . C 3 HOH A 44 544 8 HOH HOH . C 3 HOH A 45 545 54 HOH HOH . C 3 HOH A 46 546 38 HOH HOH . C 3 HOH A 47 547 58 HOH HOH . C 3 HOH A 48 548 3 HOH HOH . C 3 HOH A 49 549 63 HOH HOH . C 3 HOH A 50 550 57 HOH HOH . C 3 HOH A 51 551 66 HOH HOH . C 3 HOH A 52 552 41 HOH HOH . C 3 HOH A 53 553 25 HOH HOH . C 3 HOH A 54 554 29 HOH HOH . C 3 HOH A 55 555 19 HOH HOH . C 3 HOH A 56 556 56 HOH HOH . C 3 HOH A 57 557 39 HOH HOH . C 3 HOH A 58 558 32 HOH HOH . C 3 HOH A 59 559 48 HOH HOH . C 3 HOH A 60 560 50 HOH HOH . C 3 HOH A 61 561 60 HOH HOH . C 3 HOH A 62 562 47 HOH HOH . C 3 HOH A 63 563 36 HOH HOH . C 3 HOH A 64 564 40 HOH HOH . C 3 HOH A 65 565 62 HOH HOH . C 3 HOH A 66 566 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . B 2 -17.652 37.831 -8.57 1 53.33 ? FE1 FES 401 A 1 HETATM 2 FE FE2 FES . . . B 2 -17.491 35.066 -9.438 1 49.12 ? FE2 FES 401 A 1 HETATM 3 S S1 FES . . . B 2 -16.008 36.7 -9.508 1 37.67 ? S1 FES 401 A 1 HETATM 4 S S2 FES . . . B 2 -19.154 36.193 -8.552 1 38.86 ? S2 FES 401 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #