data_6Y8K # _model_server_result.job_id UoIgyNDO0cZSU8TTu4_gpA _model_server_result.datetime_utc '2024-10-12 07:31:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":206}' # _entry.id 6Y8K # _exptl.entry_id 6Y8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y8K _cell.length_a 122.47 _cell.length_b 122.47 _cell.length_c 122.47 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 208 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 AAA CYS 28 1_555 A SG CYS 34 AAA CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 28 AAA CYS 31 1_555 A SG CYS 42 AAA CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf3 A SG CYS 45 AAA CYS 48 1_555 A SG CYS 59 AAA CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? disulf ? disulf4 A SG CYS 62 AAA CYS 65 1_555 A SG CYS 75 AAA CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 A SG CYS 65 AAA CYS 68 1_555 A SG CYS 83 AAA CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 85 AAA CYS 88 1_555 A SG CYS 99 AAA CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf7 A SG CYS 91 AAA CYS 94 1_555 A SG CYS 96 AAA CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 A SG CYS 103 AAA CYS 106 1_555 A SG CYS 114 AAA CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 A SG CYS 117 AAA CYS 120 1_555 A SG CYS 130 AAA CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf10 A SG CYS 136 AAA CYS 139 1_555 A SG CYS 155 AAA CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 B SG CYS 1 PPP CYS 1 1_555 I C19 29N . PPP 29N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? covale ? covale2 B SG CYS 8 PPP CYS 8 1_555 I C16 29N . PPP 29N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale3 B C TYR 13 PPP TYR 13 1_555 B N NLE 14 PPP NLE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale4 B C NLE 14 PPP NLE 14 1_555 B N CYS 15 PPP CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale5 B SG CYS 15 PPP CYS 15 1_555 I C25 29N . PPP 29N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.656 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y8K _atom_sites.fract_transf_matrix[1][1] 0.008165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT AAA 1 201 201 ACT ACT . D 4 EDO AAA 1 202 202 EDO EDO . E 5 SO4 AAA 1 203 203 SO4 SO4 . F 5 SO4 AAA 1 204 204 SO4 SO4 . G 5 SO4 AAA 1 205 205 SO4 SO4 . H 6 NA AAA 1 206 206 NA NA . I 7 29N PPP 1 101 101 29N TA9 . J 8 HOH AAA 1 301 2 HOH HOH . J 8 HOH AAA 2 302 22 HOH HOH . J 8 HOH AAA 3 303 19 HOH HOH . J 8 HOH AAA 4 304 7 HOH HOH . J 8 HOH AAA 5 305 13 HOH HOH . J 8 HOH AAA 6 306 12 HOH HOH . J 8 HOH AAA 7 307 8 HOH HOH . J 8 HOH AAA 8 308 23 HOH HOH . J 8 HOH AAA 9 309 24 HOH HOH . J 8 HOH AAA 10 310 15 HOH HOH . J 8 HOH AAA 11 311 28 HOH HOH . J 8 HOH AAA 12 312 9 HOH HOH . J 8 HOH AAA 13 313 27 HOH HOH . J 8 HOH AAA 14 314 20 HOH HOH . J 8 HOH AAA 15 315 25 HOH HOH . J 8 HOH AAA 16 316 3 HOH HOH . J 8 HOH AAA 17 317 14 HOH HOH . J 8 HOH AAA 18 318 16 HOH HOH . J 8 HOH AAA 19 319 4 HOH HOH . J 8 HOH AAA 20 320 18 HOH HOH . J 8 HOH AAA 21 321 5 HOH HOH . J 8 HOH AAA 22 322 10 HOH HOH . J 8 HOH AAA 23 323 30 HOH HOH . J 8 HOH AAA 24 324 1 HOH HOH . J 8 HOH AAA 25 325 11 HOH HOH . J 8 HOH AAA 26 326 17 HOH HOH . J 8 HOH AAA 27 327 6 HOH HOH . J 8 HOH AAA 28 328 29 HOH HOH . K 8 HOH PPP 1 201 21 HOH HOH . K 8 HOH PPP 2 202 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x 30.618 _atom_site.Cartn_y 11.219 _atom_site.Cartn_z -50.016 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 53.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 206 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #