data_6Y8X # _model_server_result.job_id xJ0S-FWt022VE14p3awc8w _model_server_result.datetime_utc '2025-01-25 11:19:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6Y8X # _exptl.entry_id 6Y8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109 _cell.angle_gamma 90 _cell.entry_id 6Y8X _cell.length_a 59.21 _cell.length_b 86.22 _cell.length_c 63.52 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 122 AA SER 121 1_555 B CA CA . AA CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc2 A OG SER 122 AA SER 121 1_555 C NA NA . AA NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc3 A OD2 ASP 293 AA ASP 292 1_555 B CA CA . AA CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc4 A OD1 ASP 295 AA ASP 294 1_555 B CA CA . AA CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc5 A OD2 ASP 295 AA ASP 294 1_555 B CA CA . AA CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc6 A OD1 ASP 297 AA ASP 296 1_555 B CA CA . AA CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc7 A OD2 ASP 297 AA ASP 296 1_555 B CA CA . AA CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y8X _atom_sites.fract_transf_matrix[1][1] 0.016889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005815 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA AA 1 601 1 CA CA . C 3 NA AA 1 602 2 NA NA . D 4 HOH AA 1 701 171 HOH HOH . D 4 HOH AA 2 702 174 HOH HOH . D 4 HOH AA 3 703 181 HOH HOH . D 4 HOH AA 4 704 60 HOH HOH . D 4 HOH AA 5 705 172 HOH HOH . D 4 HOH AA 6 706 14 HOH HOH . D 4 HOH AA 7 707 23 HOH HOH . D 4 HOH AA 8 708 28 HOH HOH . D 4 HOH AA 9 709 96 HOH HOH . D 4 HOH AA 10 710 80 HOH HOH . D 4 HOH AA 11 711 41 HOH HOH . D 4 HOH AA 12 712 136 HOH HOH . D 4 HOH AA 13 713 55 HOH HOH . D 4 HOH AA 14 714 13 HOH HOH . D 4 HOH AA 15 715 215 HOH HOH . D 4 HOH AA 16 716 47 HOH HOH . D 4 HOH AA 17 717 118 HOH HOH . D 4 HOH AA 18 718 26 HOH HOH . D 4 HOH AA 19 719 35 HOH HOH . D 4 HOH AA 20 720 108 HOH HOH . D 4 HOH AA 21 721 107 HOH HOH . D 4 HOH AA 22 722 78 HOH HOH . D 4 HOH AA 23 723 12 HOH HOH . D 4 HOH AA 24 724 27 HOH HOH . D 4 HOH AA 25 725 33 HOH HOH . D 4 HOH AA 26 726 74 HOH HOH . D 4 HOH AA 27 727 157 HOH HOH . D 4 HOH AA 28 728 201 HOH HOH . D 4 HOH AA 29 729 64 HOH HOH . D 4 HOH AA 30 730 40 HOH HOH . D 4 HOH AA 31 731 127 HOH HOH . D 4 HOH AA 32 732 82 HOH HOH . D 4 HOH AA 33 733 15 HOH HOH . D 4 HOH AA 34 734 58 HOH HOH . D 4 HOH AA 35 735 132 HOH HOH . D 4 HOH AA 36 736 66 HOH HOH . D 4 HOH AA 37 737 95 HOH HOH . D 4 HOH AA 38 738 3 HOH HOH . D 4 HOH AA 39 739 176 HOH HOH . D 4 HOH AA 40 740 11 HOH HOH . D 4 HOH AA 41 741 24 HOH HOH . D 4 HOH AA 42 742 81 HOH HOH . D 4 HOH AA 43 743 79 HOH HOH . D 4 HOH AA 44 744 16 HOH HOH . D 4 HOH AA 45 745 91 HOH HOH . D 4 HOH AA 46 746 53 HOH HOH . D 4 HOH AA 47 747 83 HOH HOH . D 4 HOH AA 48 748 62 HOH HOH . D 4 HOH AA 49 749 21 HOH HOH . D 4 HOH AA 50 750 42 HOH HOH . D 4 HOH AA 51 751 151 HOH HOH . D 4 HOH AA 52 752 4 HOH HOH . D 4 HOH AA 53 753 90 HOH HOH . D 4 HOH AA 54 754 54 HOH HOH . D 4 HOH AA 55 755 38 HOH HOH . D 4 HOH AA 56 756 84 HOH HOH . D 4 HOH AA 57 757 18 HOH HOH . D 4 HOH AA 58 758 39 HOH HOH . D 4 HOH AA 59 759 5 HOH HOH . D 4 HOH AA 60 760 117 HOH HOH . D 4 HOH AA 61 761 49 HOH HOH . D 4 HOH AA 62 762 129 HOH HOH . D 4 HOH AA 63 763 70 HOH HOH . D 4 HOH AA 64 764 102 HOH HOH . D 4 HOH AA 65 765 56 HOH HOH . D 4 HOH AA 66 766 68 HOH HOH . D 4 HOH AA 67 767 113 HOH HOH . D 4 HOH AA 68 768 48 HOH HOH . D 4 HOH AA 69 769 34 HOH HOH . D 4 HOH AA 70 770 51 HOH HOH . D 4 HOH AA 71 771 121 HOH HOH . D 4 HOH AA 72 772 179 HOH HOH . D 4 HOH AA 73 773 19 HOH HOH . D 4 HOH AA 74 774 115 HOH HOH . D 4 HOH AA 75 775 85 HOH HOH . D 4 HOH AA 76 776 87 HOH HOH . D 4 HOH AA 77 777 61 HOH HOH . D 4 HOH AA 78 778 17 HOH HOH . D 4 HOH AA 79 779 9 HOH HOH . D 4 HOH AA 80 780 2 HOH HOH . D 4 HOH AA 81 781 112 HOH HOH . D 4 HOH AA 82 782 43 HOH HOH . D 4 HOH AA 83 783 65 HOH HOH . D 4 HOH AA 84 784 94 HOH HOH . D 4 HOH AA 85 785 186 HOH HOH . D 4 HOH AA 86 786 1 HOH HOH . D 4 HOH AA 87 787 32 HOH HOH . D 4 HOH AA 88 788 75 HOH HOH . D 4 HOH AA 89 789 25 HOH HOH . D 4 HOH AA 90 790 196 HOH HOH . D 4 HOH AA 91 791 88 HOH HOH . D 4 HOH AA 92 792 22 HOH HOH . D 4 HOH AA 93 793 178 HOH HOH . D 4 HOH AA 94 794 73 HOH HOH . D 4 HOH AA 95 795 71 HOH HOH . D 4 HOH AA 96 796 149 HOH HOH . D 4 HOH AA 97 797 37 HOH HOH . D 4 HOH AA 98 798 57 HOH HOH . D 4 HOH AA 99 799 200 HOH HOH . D 4 HOH AA 100 800 59 HOH HOH . D 4 HOH AA 101 801 216 HOH HOH . D 4 HOH AA 102 802 124 HOH HOH . D 4 HOH AA 103 803 114 HOH HOH . D 4 HOH AA 104 804 98 HOH HOH . D 4 HOH AA 105 805 183 HOH HOH . D 4 HOH AA 106 806 144 HOH HOH . D 4 HOH AA 107 807 199 HOH HOH . D 4 HOH AA 108 808 125 HOH HOH . D 4 HOH AA 109 809 184 HOH HOH . D 4 HOH AA 110 810 20 HOH HOH . D 4 HOH AA 111 811 31 HOH HOH . D 4 HOH AA 112 812 7 HOH HOH . D 4 HOH AA 113 813 92 HOH HOH . D 4 HOH AA 114 814 6 HOH HOH . D 4 HOH AA 115 815 100 HOH HOH . D 4 HOH AA 116 816 180 HOH HOH . D 4 HOH AA 117 817 109 HOH HOH . D 4 HOH AA 118 818 122 HOH HOH . D 4 HOH AA 119 819 190 HOH HOH . D 4 HOH AA 120 820 198 HOH HOH . D 4 HOH AA 121 821 126 HOH HOH . D 4 HOH AA 122 822 134 HOH HOH . D 4 HOH AA 123 823 123 HOH HOH . D 4 HOH AA 124 824 150 HOH HOH . D 4 HOH AA 125 825 164 HOH HOH . D 4 HOH AA 126 826 46 HOH HOH . D 4 HOH AA 127 827 175 HOH HOH . D 4 HOH AA 128 828 131 HOH HOH . D 4 HOH AA 129 829 146 HOH HOH . D 4 HOH AA 130 830 212 HOH HOH . D 4 HOH AA 131 831 111 HOH HOH . D 4 HOH AA 132 832 110 HOH HOH . D 4 HOH AA 133 833 160 HOH HOH . D 4 HOH AA 134 834 143 HOH HOH . D 4 HOH AA 135 835 105 HOH HOH . D 4 HOH AA 136 836 36 HOH HOH . D 4 HOH AA 137 837 10 HOH HOH . D 4 HOH AA 138 838 130 HOH HOH . D 4 HOH AA 139 839 165 HOH HOH . D 4 HOH AA 140 840 191 HOH HOH . D 4 HOH AA 141 841 140 HOH HOH . D 4 HOH AA 142 842 148 HOH HOH . D 4 HOH AA 143 843 194 HOH HOH . D 4 HOH AA 144 844 145 HOH HOH . D 4 HOH AA 145 845 153 HOH HOH . D 4 HOH AA 146 846 152 HOH HOH . D 4 HOH AA 147 847 103 HOH HOH . D 4 HOH AA 148 848 116 HOH HOH . D 4 HOH AA 149 849 213 HOH HOH . D 4 HOH AA 150 850 173 HOH HOH . D 4 HOH AA 151 851 119 HOH HOH . D 4 HOH AA 152 852 137 HOH HOH . D 4 HOH AA 153 853 30 HOH HOH . D 4 HOH AA 154 854 170 HOH HOH . D 4 HOH AA 155 855 8 HOH HOH . D 4 HOH AA 156 856 163 HOH HOH . D 4 HOH AA 157 857 158 HOH HOH . D 4 HOH AA 158 858 104 HOH HOH . D 4 HOH AA 159 859 142 HOH HOH . D 4 HOH AA 160 860 161 HOH HOH . D 4 HOH AA 161 861 202 HOH HOH . D 4 HOH AA 162 862 45 HOH HOH . D 4 HOH AA 163 863 86 HOH HOH . D 4 HOH AA 164 864 204 HOH HOH . D 4 HOH AA 165 865 147 HOH HOH . D 4 HOH AA 166 866 29 HOH HOH . D 4 HOH AA 167 867 44 HOH HOH . D 4 HOH AA 168 868 156 HOH HOH . D 4 HOH AA 169 869 77 HOH HOH . D 4 HOH AA 170 870 99 HOH HOH . D 4 HOH AA 171 871 167 HOH HOH . D 4 HOH AA 172 872 154 HOH HOH . D 4 HOH AA 173 873 187 HOH HOH . D 4 HOH AA 174 874 162 HOH HOH . D 4 HOH AA 175 875 128 HOH HOH . D 4 HOH AA 176 876 189 HOH HOH . D 4 HOH AA 177 877 89 HOH HOH . D 4 HOH AA 178 878 214 HOH HOH . D 4 HOH AA 179 879 182 HOH HOH . D 4 HOH AA 180 880 188 HOH HOH . D 4 HOH AA 181 881 93 HOH HOH . D 4 HOH AA 182 882 203 HOH HOH . D 4 HOH AA 183 883 159 HOH HOH . D 4 HOH AA 184 884 139 HOH HOH . D 4 HOH AA 185 885 50 HOH HOH . D 4 HOH AA 186 886 210 HOH HOH . D 4 HOH AA 187 887 106 HOH HOH . D 4 HOH AA 188 888 69 HOH HOH . D 4 HOH AA 189 889 141 HOH HOH . D 4 HOH AA 190 890 63 HOH HOH . D 4 HOH AA 191 891 97 HOH HOH . D 4 HOH AA 192 892 211 HOH HOH . D 4 HOH AA 193 893 209 HOH HOH . D 4 HOH AA 194 894 52 HOH HOH . D 4 HOH AA 195 895 155 HOH HOH . D 4 HOH AA 196 896 207 HOH HOH . D 4 HOH AA 197 897 166 HOH HOH . D 4 HOH AA 198 898 208 HOH HOH . D 4 HOH AA 199 899 185 HOH HOH . D 4 HOH AA 200 900 120 HOH HOH . D 4 HOH AA 201 901 195 HOH HOH . D 4 HOH AA 202 902 169 HOH HOH . D 4 HOH AA 203 903 177 HOH HOH . D 4 HOH AA 204 904 206 HOH HOH . D 4 HOH AA 205 905 133 HOH HOH . D 4 HOH AA 206 906 193 HOH HOH . D 4 HOH AA 207 907 67 HOH HOH . D 4 HOH AA 208 908 205 HOH HOH . D 4 HOH AA 209 909 168 HOH HOH . D 4 HOH AA 210 910 138 HOH HOH . D 4 HOH AA 211 911 197 HOH HOH . D 4 HOH AA 212 912 192 HOH HOH . D 4 HOH AA 213 913 101 HOH HOH . D 4 HOH AA 214 914 76 HOH HOH . D 4 HOH AA 215 915 135 HOH HOH . D 4 HOH AA 216 916 72 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.617 _atom_site.Cartn_y 1.185 _atom_site.Cartn_z 12.993 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id AA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 392 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #