data_6Y90 # _model_server_result.job_id IqQ-FzgqdQXSV26uFZeIEg _model_server_result.datetime_utc '2024-10-18 04:33:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":303}' # _entry.id 6Y90 # _exptl.entry_id 6Y90 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y90 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 167 1_555 A SG CYS 139 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 123 B CYS 167 1_555 B SG CYS 139 B CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 148 C CYS 148 1_555 C SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 224 C CYS 224 1_555 D SG CYS 213 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 D SG CYS 23 D CYS 23 1_555 D SG CYS 87 D CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 133 D CYS 133 1_555 D SG CYS 193 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 E SG CYS 148 H CYS 148 1_555 E SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 E SG CYS 224 H CYS 224 1_555 F SG CYS 213 L CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf11 F SG CYS 23 L CYS 23 1_555 F SG CYS 87 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 F SG CYS 133 L CYS 133 1_555 F SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B CD2 LEU 17 B LEU 61 1_555 Q CAC Y01 . B Y01 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? covale ? covale2 B CD1 ILE 91 B ILE 135 1_555 U C29 PC1 . B PC1 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y90 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 Y01 A 1 301 1 Y01 Y01 . H 4 Y01 A 1 302 3 Y01 Y01 . I 4 Y01 A 1 303 4 Y01 Y01 . J 5 PC1 A 1 304 5 PC1 PC1 . K 6 MYS A 1 305 6 MYS MYC . L 6 MYS A 1 306 7 MYS MYC . M 6 MYS A 1 307 8 MYS MYC . N 6 MYS A 1 308 9 MYS MYC . O 6 MYS A 1 309 10 MYS MYC . P 4 Y01 A 1 310 2 Y01 Y01 . Q 4 Y01 B 1 301 2 Y01 Y01 . R 4 Y01 B 1 302 1 Y01 Y01 . S 4 Y01 B 1 303 3 Y01 Y01 . T 4 Y01 B 1 304 4 Y01 Y01 . U 5 PC1 B 1 305 5 PC1 PC1 . V 6 MYS B 1 306 6 MYS MYC . W 6 MYS B 1 307 7 MYS MYC . X 6 MYS B 1 308 8 MYS MYC . Y 6 MYS B 1 309 9 MYS MYC . Z 6 MYS B 1 310 10 MYS MYC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . I 4 134.013 125.25 104.596 1 82.43 ? CAA Y01 303 A 1 HETATM 2 C CBA Y01 . . . I 4 135.369 125.884 104.281 1 82.43 ? CBA Y01 303 A 1 HETATM 3 C CAB Y01 . . . I 4 135.509 127.197 105.055 1 82.43 ? CAB Y01 303 A 1 HETATM 4 C CAN Y01 . . . I 4 135.466 126.166 102.781 1 82.43 ? CAN Y01 303 A 1 HETATM 5 C CAJ Y01 . . . I 4 135.371 124.853 102.001 1 82.43 ? CAJ Y01 303 A 1 HETATM 6 C CAO Y01 . . . I 4 134.381 125.026 100.848 1 82.43 ? CAO Y01 303 A 1 HETATM 7 C CBB Y01 . . . I 4 134.979 124.463 99.556 1 82.43 ? CBB Y01 303 A 1 HETATM 8 C CBE Y01 . . . I 4 134.473 125.296 98.376 1 82.43 ? CBE Y01 303 A 1 HETATM 9 C CAP Y01 . . . I 4 135.165 126.67 98.317 1 82.43 ? CAP Y01 303 A 1 HETATM 10 C CAQ Y01 . . . I 4 135.116 127.042 96.81 1 82.43 ? CAQ Y01 303 A 1 HETATM 11 C CBG Y01 . . . I 4 134.372 125.85 96.206 1 82.43 ? CBG Y01 303 A 1 HETATM 12 C CBI Y01 . . . I 4 134.894 124.725 97.049 1 82.43 ? CBI Y01 303 A 1 HETATM 13 C CAE Y01 . . . I 4 136.424 124.588 96.934 1 82.43 ? CAE Y01 303 A 1 HETATM 14 C CAU Y01 . . . I 4 134.199 123.43 96.657 1 82.43 ? CAU Y01 303 A 1 HETATM 15 C CAS Y01 . . . I 4 134.51 123.151 95.184 1 82.43 ? CAS Y01 303 A 1 HETATM 16 C CBF Y01 . . . I 4 134.024 124.312 94.306 1 82.43 ? CBF Y01 303 A 1 HETATM 17 C CBD Y01 . . . I 4 134.691 125.608 94.74 1 82.43 ? CBD Y01 303 A 1 HETATM 18 C CAK Y01 . . . I 4 134.16 126.776 93.919 1 82.43 ? CAK Y01 303 A 1 HETATM 19 C CAI Y01 . . . I 4 133.827 126.412 92.611 1 82.43 ? CAI Y01 303 A 1 HETATM 20 C CAZ Y01 . . . I 4 133.942 125.127 92.079 1 82.43 ? CAZ Y01 303 A 1 HETATM 21 C CAV Y01 . . . I 4 133.477 124.936 90.765 1 82.43 ? CAV Y01 303 A 1 HETATM 22 C CBH Y01 . . . I 4 134.416 124.062 92.863 1 82.43 ? CBH Y01 303 A 1 HETATM 23 C CAD Y01 . . . I 4 135.956 123.938 92.822 1 82.43 ? CAD Y01 303 A 1 HETATM 24 C CAT Y01 . . . I 4 133.764 122.781 92.361 1 82.43 ? CAT Y01 303 A 1 HETATM 25 C CAR Y01 . . . I 4 134.135 122.502 90.895 1 82.43 ? CAR Y01 303 A 1 HETATM 26 C CBC Y01 . . . I 4 134.14 123.772 90.026 1 82.43 ? CBC Y01 303 A 1 HETATM 27 O OAW Y01 . . . I 4 135.492 124.123 89.685 1 82.43 ? OAW Y01 303 A 1 HETATM 28 C CAY Y01 . . . I 4 135.492 124.921 88.582 1 82.43 ? CAY Y01 303 A 1 HETATM 29 O OAG Y01 . . . I 4 134.568 124.979 87.772 1 82.43 ? OAG Y01 303 A 1 HETATM 30 C CAM Y01 . . . I 4 136.76 125.757 88.388 1 82.43 ? CAM Y01 303 A 1 HETATM 31 C CAL Y01 . . . I 4 136.821 126.275 86.948 1 82.43 ? CAL Y01 303 A 1 HETATM 32 C CAX Y01 . . . I 4 137.039 125.107 85.982 1 82.43 ? CAX Y01 303 A 1 HETATM 33 O OAH Y01 . . . I 4 137.717 124.143 86.4 1 82.43 ? OAH Y01 303 A 1 HETATM 34 O OAF Y01 . . . I 4 136.521 125.205 84.849 1 82.43 ? OAF Y01 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #