data_6Y90 # _model_server_result.job_id uV5ZT6d98vy0as8INfxT6g _model_server_result.datetime_utc '2024-10-18 04:21:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":303}' # _entry.id 6Y90 # _exptl.entry_id 6Y90 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y90 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 167 1_555 A SG CYS 139 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 123 B CYS 167 1_555 B SG CYS 139 B CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 148 C CYS 148 1_555 C SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 224 C CYS 224 1_555 D SG CYS 213 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 D SG CYS 23 D CYS 23 1_555 D SG CYS 87 D CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 133 D CYS 133 1_555 D SG CYS 193 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 E SG CYS 148 H CYS 148 1_555 E SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 E SG CYS 224 H CYS 224 1_555 F SG CYS 213 L CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf11 F SG CYS 23 L CYS 23 1_555 F SG CYS 87 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 F SG CYS 133 L CYS 133 1_555 F SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B CD2 LEU 17 B LEU 61 1_555 Q CAC Y01 . B Y01 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? covale ? covale2 B CD1 ILE 91 B ILE 135 1_555 U C29 PC1 . B PC1 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y90 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 Y01 A 1 301 1 Y01 Y01 . H 4 Y01 A 1 302 3 Y01 Y01 . I 4 Y01 A 1 303 4 Y01 Y01 . J 5 PC1 A 1 304 5 PC1 PC1 . K 6 MYS A 1 305 6 MYS MYC . L 6 MYS A 1 306 7 MYS MYC . M 6 MYS A 1 307 8 MYS MYC . N 6 MYS A 1 308 9 MYS MYC . O 6 MYS A 1 309 10 MYS MYC . P 4 Y01 A 1 310 2 Y01 Y01 . Q 4 Y01 B 1 301 2 Y01 Y01 . R 4 Y01 B 1 302 1 Y01 Y01 . S 4 Y01 B 1 303 3 Y01 Y01 . T 4 Y01 B 1 304 4 Y01 Y01 . U 5 PC1 B 1 305 5 PC1 PC1 . V 6 MYS B 1 306 6 MYS MYC . W 6 MYS B 1 307 7 MYS MYC . X 6 MYS B 1 308 8 MYS MYC . Y 6 MYS B 1 309 9 MYS MYC . Z 6 MYS B 1 310 10 MYS MYC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . S 4 109.287 122.496 110.741 1 80.5 ? CAA Y01 303 B 1 HETATM 2 C CBA Y01 . . . S 4 108.565 122.636 112.082 1 80.5 ? CBA Y01 303 B 1 HETATM 3 C CAB Y01 . . . S 4 109.259 123.708 112.923 1 80.5 ? CAB Y01 303 B 1 HETATM 4 C CAN Y01 . . . S 4 108.606 121.298 112.821 1 80.5 ? CAN Y01 303 B 1 HETATM 5 C CAJ Y01 . . . S 4 107.745 121.377 114.084 1 80.5 ? CAJ Y01 303 B 1 HETATM 6 C CAO Y01 . . . S 4 108.591 121 115.302 1 80.5 ? CAO Y01 303 B 1 HETATM 7 C CBB Y01 . . . S 4 107.907 119.878 116.087 1 80.5 ? CBB Y01 303 B 1 HETATM 8 C CAC Y01 . . . S 4 107.825 118.641 115.185 1 80.5 ? CAC Y01 303 B 1 HETATM 9 C CBE Y01 . . . S 4 108.717 119.569 117.359 1 80.5 ? CBE Y01 303 B 1 HETATM 10 C CAP Y01 . . . S 4 109.37 120.841 117.935 1 80.5 ? CAP Y01 303 B 1 HETATM 11 C CAQ Y01 . . . S 4 109.524 120.539 119.447 1 80.5 ? CAQ Y01 303 B 1 HETATM 12 C CBG Y01 . . . S 4 108.959 119.126 119.558 1 80.5 ? CBG Y01 303 B 1 HETATM 13 C CBI Y01 . . . S 4 107.855 119.165 118.542 1 80.5 ? CBI Y01 303 B 1 HETATM 14 C CAE Y01 . . . S 4 106.809 120.242 118.883 1 80.5 ? CAE Y01 303 B 1 HETATM 15 C CAU Y01 . . . S 4 107.211 117.784 118.458 1 80.5 ? CAU Y01 303 B 1 HETATM 16 C CAS Y01 . . . S 4 106.637 117.431 119.828 1 80.5 ? CAS Y01 303 B 1 HETATM 17 C CBF Y01 . . . S 4 107.744 117.444 120.891 1 80.5 ? CBF Y01 303 B 1 HETATM 18 C CBD Y01 . . . S 4 108.411 118.802 120.939 1 80.5 ? CBD Y01 303 B 1 HETATM 19 C CAK Y01 . . . S 4 109.567 118.735 121.913 1 80.5 ? CAK Y01 303 B 1 HETATM 20 C CAI Y01 . . . S 4 109.219 118.094 123.102 1 80.5 ? CAI Y01 303 B 1 HETATM 21 C CAZ Y01 . . . S 4 108.092 117.288 123.268 1 80.5 ? CAZ Y01 303 B 1 HETATM 22 C CAV Y01 . . . S 4 107.906 116.702 124.527 1 80.5 ? CAV Y01 303 B 1 HETATM 23 C CBH Y01 . . . S 4 107.129 117.165 122.25 1 80.5 ? CBH Y01 303 B 1 HETATM 24 C CAD Y01 . . . S 4 106.029 118.198 122.517 1 80.5 ? CAD Y01 303 B 1 HETATM 25 C CAT Y01 . . . S 4 106.512 115.775 122.212 1 80.5 ? CAT Y01 303 B 1 HETATM 26 C CAR Y01 . . . S 4 106.047 115.386 123.588 1 80.5 ? CAR Y01 303 B 1 HETATM 27 C CBC Y01 . . . S 4 107.287 115.314 124.444 1 80.5 ? CBC Y01 303 B 1 HETATM 28 O OAW Y01 . . . S 4 106.956 114.854 125.767 1 80.5 ? OAW Y01 303 B 1 HETATM 29 C CAY Y01 . . . S 4 106.963 113.493 125.822 1 80.5 ? CAY Y01 303 B 1 HETATM 30 O OAG Y01 . . . S 4 106.085 112.775 125.345 1 80.5 ? OAG Y01 303 B 1 HETATM 31 C CAM Y01 . . . S 4 108.167 112.881 126.542 1 80.5 ? CAM Y01 303 B 1 HETATM 32 C CAL Y01 . . . S 4 107.757 111.547 127.169 1 80.5 ? CAL Y01 303 B 1 HETATM 33 C CAX Y01 . . . S 4 108.942 110.948 127.928 1 80.5 ? CAX Y01 303 B 1 HETATM 34 O OAH Y01 . . . S 4 109.009 109.7 127.982 1 80.5 ? OAH Y01 303 B 1 HETATM 35 O OAF Y01 . . . S 4 109.754 111.75 128.439 1 80.5 ? OAF Y01 303 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #