data_6Y90
#
_model_server_result.job_id            UJFHJ6u6guXsD0MRPhWUfw 
_model_server_result.datetime_utc      '2024-10-18 04:20:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y90 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":304}' 
#
_entry.id    6Y90 
#
_exptl.entry_id    6Y90 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Y90 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y90 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 123 A CYS 167 1_555 A SG CYS 139 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 B SG CYS 123 B CYS 167 1_555 B SG CYS 139 B CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 C SG CYS 148 C CYS 148 1_555 C SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 C SG CYS 224 C CYS 224 1_555 D SG CYS 213 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf6 D SG CYS 23 D CYS 23 1_555 D SG CYS 87 D CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 D SG CYS 133 D CYS 133 1_555 D SG CYS 193 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 E SG CYS 148 H CYS 148 1_555 E SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 E SG CYS 224 H CYS 224 1_555 F SG CYS 213 L CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf11 F SG CYS 23 L CYS 23 1_555 F SG CYS 87 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 F SG CYS 133 L CYS 133 1_555 F SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 B CD2 LEU 17 B LEU 61 1_555 Q CAC Y01 . B Y01 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? 
covale ? covale2 B CD1 ILE 91 B ILE 135 1_555 U C29 PC1 . B PC1 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6Y90 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 Y01 A 1 301 1 Y01 Y01 . 
H 4 Y01 A 1 302 3 Y01 Y01 . 
I 4 Y01 A 1 303 4 Y01 Y01 . 
J 5 PC1 A 1 304 5 PC1 PC1 . 
K 6 MYS A 1 305 6 MYS MYC . 
L 6 MYS A 1 306 7 MYS MYC . 
M 6 MYS A 1 307 8 MYS MYC . 
N 6 MYS A 1 308 9 MYS MYC . 
O 6 MYS A 1 309 10 MYS MYC . 
P 4 Y01 A 1 310 2 Y01 Y01 . 
Q 4 Y01 B 1 301 2 Y01 Y01 . 
R 4 Y01 B 1 302 1 Y01 Y01 . 
S 4 Y01 B 1 303 3 Y01 Y01 . 
T 4 Y01 B 1 304 4 Y01 Y01 . 
U 5 PC1 B 1 305 5 PC1 PC1 . 
V 6 MYS B 1 306 6 MYS MYC . 
W 6 MYS B 1 307 7 MYS MYC . 
X 6 MYS B 1 308 8 MYS MYC . 
Y 6 MYS B 1 309 9 MYS MYC . 
Z 6 MYS B 1 310 10 MYS MYC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . T 4 110.157 119.092 104.502 1 87.49 ? CAA Y01 304 B 1 
HETATM 2 C CBA Y01 . . . T 4 108.8 118.464 104.182 1 87.49 ? CBA Y01 304 B 1 
HETATM 3 C CAB Y01 . . . T 4 108.65 117.153 104.956 1 87.49 ? CAB Y01 304 B 1 
HETATM 4 C CAN Y01 . . . T 4 108.709 118.182 102.681 1 87.49 ? CAN Y01 304 B 1 
HETATM 5 C CAJ Y01 . . . T 4 108.813 119.495 101.901 1 87.49 ? CAJ Y01 304 B 1 
HETATM 6 C CAO Y01 . . . T 4 109.807 119.316 100.752 1 87.49 ? CAO Y01 304 B 1 
HETATM 7 C CBB Y01 . . . T 4 109.217 119.881 99.458 1 87.49 ? CBB Y01 304 B 1 
HETATM 8 C CBE Y01 . . . T 4 109.724 119.045 98.28 1 87.49 ? CBE Y01 304 B 1 
HETATM 9 C CAP Y01 . . . T 4 109.026 117.675 98.219 1 87.49 ? CAP Y01 304 B 1 
HETATM 10 C CAQ Y01 . . . T 4 109.08 117.302 96.712 1 87.49 ? CAQ Y01 304 B 1 
HETATM 11 C CBG Y01 . . . T 4 109.831 118.49 96.11 1 87.49 ? CBG Y01 304 B 1 
HETATM 12 C CBI Y01 . . . T 4 109.311 119.618 96.951 1 87.49 ? CBI Y01 304 B 1 
HETATM 13 C CAE Y01 . . . T 4 107.782 119.762 96.829 1 87.49 ? CAE Y01 304 B 1 
HETATM 14 C CAU Y01 . . . T 4 110.014 120.91 96.561 1 87.49 ? CAU Y01 304 B 1 
HETATM 15 C CAS Y01 . . . T 4 109.71 121.19 95.087 1 87.49 ? CAS Y01 304 B 1 
HETATM 16 C CBF Y01 . . . T 4 110.195 120.026 94.211 1 87.49 ? CBF Y01 304 B 1 
HETATM 17 C CBD Y01 . . . T 4 109.52 118.733 94.643 1 87.49 ? CBD Y01 304 B 1 
HETATM 18 C CAK Y01 . . . T 4 110.049 117.563 93.825 1 87.49 ? CAK Y01 304 B 1 
HETATM 19 C CAI Y01 . . . T 4 110.389 117.924 92.518 1 87.49 ? CAI Y01 304 B 1 
HETATM 20 C CAZ Y01 . . . T 4 110.283 119.209 91.985 1 87.49 ? CAZ Y01 304 B 1 
HETATM 21 C CAV Y01 . . . T 4 110.754 119.398 90.673 1 87.49 ? CAV Y01 304 B 1 
HETATM 22 C CBH Y01 . . . T 4 109.81 120.277 92.766 1 87.49 ? CBH Y01 304 B 1 
HETATM 23 C CAD Y01 . . . T 4 108.27 120.408 92.719 1 87.49 ? CAD Y01 304 B 1 
HETATM 24 C CAT Y01 . . . T 4 110.47 121.555 92.267 1 87.49 ? CAT Y01 304 B 1 
HETATM 25 C CAR Y01 . . . T 4 110.107 121.835 90.8 1 87.49 ? CAR Y01 304 B 1 
HETATM 26 C CBC Y01 . . . T 4 110.1 120.565 89.931 1 87.49 ? CBC Y01 304 B 1 
HETATM 27 O OAW Y01 . . . T 4 108.748 120.22 89.584 1 87.49 ? OAW Y01 304 B 1 
HETATM 28 C CAY Y01 . . . T 4 108.748 119.421 88.481 1 87.49 ? CAY Y01 304 B 1 
HETATM 29 O OAG Y01 . . . T 4 109.675 119.358 87.675 1 87.49 ? OAG Y01 304 B 1 
HETATM 30 C CAM Y01 . . . T 4 107.477 118.591 88.282 1 87.49 ? CAM Y01 304 B 1 
HETATM 31 C CAL Y01 . . . T 4 107.42 118.073 86.842 1 87.49 ? CAL Y01 304 B 1 
HETATM 32 C CAX Y01 . . . T 4 107.211 119.241 85.875 1 87.49 ? CAX Y01 304 B 1 
HETATM 33 O OAH Y01 . . . T 4 106.536 120.208 86.289 1 87.49 ? OAH Y01 304 B 1 
HETATM 34 O OAF Y01 . . . T 4 107.733 119.14 84.744 1 87.49 ? OAF Y01 304 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#