data_6Y90 # _model_server_result.job_id C2UZOtEQYCxbOQMGYoPezA _model_server_result.datetime_utc '2024-10-18 04:24:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":305}' # _entry.id 6Y90 # _exptl.entry_id 6Y90 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 212.415 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTADECANE _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y90 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N ? 6 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 167 1_555 A SG CYS 139 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 123 B CYS 167 1_555 B SG CYS 139 B CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 148 C CYS 148 1_555 C SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 224 C CYS 224 1_555 D SG CYS 213 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 D SG CYS 23 D CYS 23 1_555 D SG CYS 87 D CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 133 D CYS 133 1_555 D SG CYS 193 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 E SG CYS 148 H CYS 148 1_555 E SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 E SG CYS 224 H CYS 224 1_555 F SG CYS 213 L CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf11 F SG CYS 23 L CYS 23 1_555 F SG CYS 87 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 F SG CYS 133 L CYS 133 1_555 F SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B CD2 LEU 17 B LEU 61 1_555 Q CAC Y01 . B Y01 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? covale ? covale2 B CD1 ILE 91 B ILE 135 1_555 U C29 PC1 . B PC1 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? # _chem_comp.formula 'C15 H32' _chem_comp.formula_weight 212.415 _chem_comp.id MYS _chem_comp.mon_nstd_flag . _chem_comp.name PENTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y90 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 Y01 A 1 301 1 Y01 Y01 . H 4 Y01 A 1 302 3 Y01 Y01 . I 4 Y01 A 1 303 4 Y01 Y01 . J 5 PC1 A 1 304 5 PC1 PC1 . K 6 MYS A 1 305 6 MYS MYC . L 6 MYS A 1 306 7 MYS MYC . M 6 MYS A 1 307 8 MYS MYC . N 6 MYS A 1 308 9 MYS MYC . O 6 MYS A 1 309 10 MYS MYC . P 4 Y01 A 1 310 2 Y01 Y01 . Q 4 Y01 B 1 301 2 Y01 Y01 . R 4 Y01 B 1 302 1 Y01 Y01 . S 4 Y01 B 1 303 3 Y01 Y01 . T 4 Y01 B 1 304 4 Y01 Y01 . U 5 PC1 B 1 305 5 PC1 PC1 . V 6 MYS B 1 306 6 MYS MYC . W 6 MYS B 1 307 7 MYS MYC . X 6 MYS B 1 308 8 MYS MYC . Y 6 MYS B 1 309 9 MYS MYC . Z 6 MYS B 1 310 10 MYS MYC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYS . . . K 6 123.429 96.851 127.52 1 59.13 ? C1 MYS 305 A 1 HETATM 2 C C2 MYS . . . K 6 122.531 96.87 126.285 1 59.13 ? C2 MYS 305 A 1 HETATM 3 C C3 MYS . . . K 6 123.23 96.142 125.139 1 59.13 ? C3 MYS 305 A 1 HETATM 4 C C4 MYS . . . K 6 122.233 95.89 124.009 1 59.13 ? C4 MYS 305 A 1 HETATM 5 C C5 MYS . . . K 6 121.92 97.207 123.301 1 59.13 ? C5 MYS 305 A 1 HETATM 6 C C6 MYS . . . K 6 121.544 96.926 121.847 1 59.13 ? C6 MYS 305 A 1 HETATM 7 C C7 MYS . . . K 6 122.693 96.188 121.161 1 59.13 ? C7 MYS 305 A 1 HETATM 8 C C8 MYS . . . K 6 123.815 97.174 120.846 1 59.13 ? C8 MYS 305 A 1 HETATM 9 C C9 MYS . . . K 6 123.583 97.784 119.465 1 59.13 ? C9 MYS 305 A 1 HETATM 10 C C10 MYS . . . K 6 123.825 96.717 118.4 1 59.13 ? C10 MYS 305 A 1 HETATM 11 C C11 MYS . . . K 6 123.626 97.319 117.011 1 59.13 ? C11 MYS 305 A 1 HETATM 12 C C12 MYS . . . K 6 122.193 97.828 116.873 1 59.13 ? C12 MYS 305 A 1 HETATM 13 C C13 MYS . . . K 6 121.819 97.899 115.395 1 59.13 ? C13 MYS 305 A 1 HETATM 14 C C14 MYS . . . K 6 122.782 98.834 114.666 1 59.13 ? C14 MYS 305 A 1 HETATM 15 C C15 MYS . . . K 6 122.529 98.749 113.163 1 59.13 ? C15 MYS 305 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #