data_6Y90
#
_model_server_result.job_id            1_0wGaMO04AwOb4LHTh6RQ 
_model_server_result.datetime_utc      '2024-10-18 04:20:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y90 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":305}' 
#
_entry.id    6Y90 
#
_exptl.entry_id    6Y90 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Y90 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y90 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 123 A CYS 167 1_555 A SG CYS 139 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 B SG CYS 123 B CYS 167 1_555 B SG CYS 139 B CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 C SG CYS 148 C CYS 148 1_555 C SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 C SG CYS 224 C CYS 224 1_555 D SG CYS 213 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf6 D SG CYS 23 D CYS 23 1_555 D SG CYS 87 D CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 D SG CYS 133 D CYS 133 1_555 D SG CYS 193 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 E SG CYS 148 H CYS 148 1_555 E SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 E SG CYS 224 H CYS 224 1_555 F SG CYS 213 L CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf11 F SG CYS 23 L CYS 23 1_555 F SG CYS 87 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 F SG CYS 133 L CYS 133 1_555 F SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 B CD2 LEU 17 B LEU 61 1_555 Q CAC Y01 . B Y01 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? 
covale ? covale2 B CD1 ILE 91 B ILE 135 1_555 U C29 PC1 . B PC1 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
_atom_sites.entry_id                     6Y90 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 Y01 A 1 301 1 Y01 Y01 . 
H 4 Y01 A 1 302 3 Y01 Y01 . 
I 4 Y01 A 1 303 4 Y01 Y01 . 
J 5 PC1 A 1 304 5 PC1 PC1 . 
K 6 MYS A 1 305 6 MYS MYC . 
L 6 MYS A 1 306 7 MYS MYC . 
M 6 MYS A 1 307 8 MYS MYC . 
N 6 MYS A 1 308 9 MYS MYC . 
O 6 MYS A 1 309 10 MYS MYC . 
P 4 Y01 A 1 310 2 Y01 Y01 . 
Q 4 Y01 B 1 301 2 Y01 Y01 . 
R 4 Y01 B 1 302 1 Y01 Y01 . 
S 4 Y01 B 1 303 3 Y01 Y01 . 
T 4 Y01 B 1 304 4 Y01 Y01 . 
U 5 PC1 B 1 305 5 PC1 PC1 . 
V 6 MYS B 1 306 6 MYS MYC . 
W 6 MYS B 1 307 7 MYS MYC . 
X 6 MYS B 1 308 8 MYS MYC . 
Y 6 MYS B 1 309 9 MYS MYC . 
Z 6 MYS B 1 310 10 MYS MYC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . U 5 134.315 137.926 123.959 1 57.88 ? O12 PC1 305 B 1 
HETATM 2 P P PC1 . . . U 5 132.936 138.534 123.882 1 57.88 ? P PC1 305 B 1 
HETATM 3 O O14 PC1 . . . U 5 133.045 139.981 123.465 1 57.88 ? O14 PC1 305 B 1 
HETATM 4 O O13 PC1 . . . U 5 132.21 138.441 125.36 1 57.88 ? O13 PC1 305 B 1 
HETATM 5 C C11 PC1 . . . U 5 132.512 139.418 126.315 1 57.88 ? C11 PC1 305 B 1 
HETATM 6 C C12 PC1 . . . U 5 132.067 138.935 127.696 1 57.88 ? C12 PC1 305 B 1 
HETATM 7 N N PC1 . . . U 5 132.041 140.043 128.637 1 57.88 ? N PC1 305 B 1 
HETATM 8 C C13 PC1 . . . U 5 131.04 141.01 128.225 1 57.88 ? C13 PC1 305 B 1 
HETATM 9 C C14 PC1 . . . U 5 131.703 139.539 129.956 1 57.88 ? C14 PC1 305 B 1 
HETATM 10 C C15 PC1 . . . U 5 133.344 140.683 128.69 1 57.88 ? C15 PC1 305 B 1 
HETATM 11 O O11 PC1 . . . U 5 132.032 137.71 122.776 1 57.88 ? O11 PC1 305 B 1 
HETATM 12 C C1 PC1 . . . U 5 131.021 138.399 122.099 1 57.88 ? C1 PC1 305 B 1 
HETATM 13 C C2 PC1 . . . U 5 131.244 138.286 120.593 1 57.88 ? C2 PC1 305 B 1 
HETATM 14 O O21 PC1 . . . U 5 130.557 139.317 119.943 1 57.88 ? O21 PC1 305 B 1 
HETATM 15 C C21 PC1 . . . U 5 131.334 140.45 119.677 1 57.88 ? C21 PC1 305 B 1 
HETATM 16 O O22 PC1 . . . U 5 132.469 140.488 120.014 1 57.88 ? O22 PC1 305 B 1 
HETATM 17 C C22 PC1 . . . U 5 130.716 141.643 118.951 1 57.88 ? C22 PC1 305 B 1 
HETATM 18 C C23 PC1 . . . U 5 131.089 141.589 117.471 1 57.88 ? C23 PC1 305 B 1 
HETATM 19 C C24 PC1 . . . U 5 130.412 140.39 116.81 1 57.88 ? C24 PC1 305 B 1 
HETATM 20 C C25 PC1 . . . U 5 128.903 140.463 117.038 1 57.88 ? C25 PC1 305 B 1 
HETATM 21 C C26 PC1 . . . U 5 128.297 141.536 116.136 1 57.88 ? C26 PC1 305 B 1 
HETATM 22 C C27 PC1 . . . U 5 128.539 141.177 114.671 1 57.88 ? C27 PC1 305 B 1 
HETATM 23 C C28 PC1 . . . U 5 127.768 139.904 114.327 1 57.88 ? C28 PC1 305 B 1 
HETATM 24 C C29 PC1 . . . U 5 127.229 140 112.901 1 57.88 ? C29 PC1 305 B 1 
HETATM 25 C C2A PC1 . . . U 5 128.393 139.978 111.912 1 57.88 ? C2A PC1 305 B 1 
HETATM 26 C C2B PC1 . . . U 5 129.179 138.678 112.075 1 57.88 ? C2B PC1 305 B 1 
HETATM 27 C C2C PC1 . . . U 5 130.434 138.732 111.207 1 57.88 ? C2C PC1 305 B 1 
HETATM 28 C C3 PC1 . . . U 5 130.719 136.938 120.105 1 57.88 ? C3 PC1 305 B 1 
HETATM 29 O O31 PC1 . . . U 5 131.51 136.484 119.044 1 57.88 ? O31 PC1 305 B 1 
HETATM 30 C C31 PC1 . . . U 5 131.677 135.095 119.014 1 57.88 ? C31 PC1 305 B 1 
HETATM 31 O O32 PC1 . . . U 5 131.522 134.456 120 1 57.88 ? O32 PC1 305 B 1 
HETATM 32 C C32 PC1 . . . U 5 132.059 134.403 117.708 1 57.88 ? C32 PC1 305 B 1 
HETATM 33 C C33 PC1 . . . U 5 130.794 133.929 116.996 1 57.88 ? C33 PC1 305 B 1 
HETATM 34 C C34 PC1 . . . U 5 131.077 133.801 115.502 1 57.88 ? C34 PC1 305 B 1 
HETATM 35 C C35 PC1 . . . U 5 131.003 135.185 114.86 1 57.88 ? C35 PC1 305 B 1 
HETATM 36 C C36 PC1 . . . U 5 131.279 135.076 113.362 1 57.88 ? C36 PC1 305 B 1 
HETATM 37 C C37 PC1 . . . U 5 130.324 134.066 112.73 1 57.88 ? C37 PC1 305 B 1 
HETATM 38 C C38 PC1 . . . U 5 130.746 133.815 111.284 1 57.88 ? C38 PC1 305 B 1 
HETATM 39 C C39 PC1 . . . U 5 130.564 135.098 110.477 1 57.88 ? C39 PC1 305 B 1 
HETATM 40 C C3A PC1 . . . U 5 130.866 134.825 109.004 1 57.88 ? C3A PC1 305 B 1 
HETATM 41 C C3B PC1 . . . U 5 130.519 136.058 108.173 1 57.88 ? C3B PC1 305 B 1 
HETATM 42 C C3C PC1 . . . U 5 129.051 136.423 108.382 1 57.88 ? C3C PC1 305 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           42 
#