data_6Y90 # _model_server_result.job_id 9SqAQLGonLDmQkIk6GdV2Q _model_server_result.datetime_utc '2024-10-18 04:20:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":310}' # _entry.id 6Y90 # _exptl.entry_id 6Y90 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y90 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 167 1_555 A SG CYS 139 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 123 B CYS 167 1_555 B SG CYS 139 B CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 148 C CYS 148 1_555 C SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 224 C CYS 224 1_555 D SG CYS 213 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 D SG CYS 23 D CYS 23 1_555 D SG CYS 87 D CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 133 D CYS 133 1_555 D SG CYS 193 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 E SG CYS 148 H CYS 148 1_555 E SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 E SG CYS 224 H CYS 224 1_555 F SG CYS 213 L CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf11 F SG CYS 23 L CYS 23 1_555 F SG CYS 87 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 F SG CYS 133 L CYS 133 1_555 F SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B CD2 LEU 17 B LEU 61 1_555 Q CAC Y01 . B Y01 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? covale ? covale2 B CD1 ILE 91 B ILE 135 1_555 U C29 PC1 . B PC1 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y90 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 Y01 A 1 301 1 Y01 Y01 . H 4 Y01 A 1 302 3 Y01 Y01 . I 4 Y01 A 1 303 4 Y01 Y01 . J 5 PC1 A 1 304 5 PC1 PC1 . K 6 MYS A 1 305 6 MYS MYC . L 6 MYS A 1 306 7 MYS MYC . M 6 MYS A 1 307 8 MYS MYC . N 6 MYS A 1 308 9 MYS MYC . O 6 MYS A 1 309 10 MYS MYC . P 4 Y01 A 1 310 2 Y01 Y01 . Q 4 Y01 B 1 301 2 Y01 Y01 . R 4 Y01 B 1 302 1 Y01 Y01 . S 4 Y01 B 1 303 3 Y01 Y01 . T 4 Y01 B 1 304 4 Y01 Y01 . U 5 PC1 B 1 305 5 PC1 PC1 . V 6 MYS B 1 306 6 MYS MYC . W 6 MYS B 1 307 7 MYS MYC . X 6 MYS B 1 308 8 MYS MYC . Y 6 MYS B 1 309 9 MYS MYC . Z 6 MYS B 1 310 10 MYS MYC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . P 4 130.193 130.945 104.184 1 67.3 ? CAA Y01 310 A 1 HETATM 2 C CBA Y01 . . . P 4 129.238 130.097 103.344 1 67.3 ? CBA Y01 310 A 1 HETATM 3 C CAB Y01 . . . P 4 128.166 129.479 104.243 1 67.3 ? CAB Y01 310 A 1 HETATM 4 C CAN Y01 . . . P 4 130.031 128.985 102.661 1 67.3 ? CAN Y01 310 A 1 HETATM 5 C CAJ Y01 . . . P 4 129.122 128.226 101.696 1 67.3 ? CAJ Y01 310 A 1 HETATM 6 C CAO Y01 . . . P 4 129.974 127.21 100.922 1 67.3 ? CAO Y01 310 A 1 HETATM 7 C CBB Y01 . . . P 4 129.156 126.466 99.847 1 67.3 ? CBB Y01 310 A 1 HETATM 8 C CAC Y01 . . . P 4 127.817 125.999 100.454 1 67.3 ? CAC Y01 310 A 1 HETATM 9 C CBE Y01 . . . P 4 128.972 127.354 98.591 1 67.3 ? CBE Y01 310 A 1 HETATM 10 C CAP Y01 . . . P 4 130.154 128.333 98.431 1 67.3 ? CAP Y01 310 A 1 HETATM 11 C CAQ Y01 . . . P 4 130.258 128.602 96.916 1 67.3 ? CAQ Y01 310 A 1 HETATM 12 C CBG Y01 . . . P 4 129.148 127.741 96.342 1 67.3 ? CBG Y01 310 A 1 HETATM 13 C CBI Y01 . . . P 4 129.128 126.582 97.294 1 67.3 ? CBI Y01 310 A 1 HETATM 14 C CAE Y01 . . . P 4 130.464 125.815 97.28 1 67.3 ? CAE Y01 310 A 1 HETATM 15 C CAU Y01 . . . P 4 127.965 125.677 96.901 1 67.3 ? CAU Y01 310 A 1 HETATM 16 C CAS Y01 . . . P 4 128.218 125.148 95.478 1 67.3 ? CAS Y01 310 A 1 HETATM 17 C CBF Y01 . . . P 4 128.434 126.279 94.458 1 67.3 ? CBF Y01 310 A 1 HETATM 18 C CBD Y01 . . . P 4 129.487 127.244 94.948 1 67.3 ? CBD Y01 310 A 1 HETATM 19 C CAK Y01 . . . P 4 129.526 128.409 93.985 1 67.3 ? CAK Y01 310 A 1 HETATM 20 C CAI Y01 . . . P 4 129.699 127.956 92.679 1 67.3 ? CAI Y01 310 A 1 HETATM 21 C CAZ Y01 . . . P 4 129.38 126.665 92.256 1 67.3 ? CAZ Y01 310 A 1 HETATM 22 C CAV Y01 . . . P 4 129.626 126.357 90.911 1 67.3 ? CAV Y01 310 A 1 HETATM 23 C CBH Y01 . . . P 4 128.97 125.672 93.164 1 67.3 ? CBH Y01 310 A 1 HETATM 24 C CAD Y01 . . . P 4 130.208 124.839 93.515 1 67.3 ? CAD Y01 310 A 1 HETATM 25 C CAT Y01 . . . P 4 127.912 124.766 92.558 1 67.3 ? CAT Y01 310 A 1 HETATM 26 C CAR Y01 . . . P 4 128.408 124.23 91.237 1 67.3 ? CAR Y01 310 A 1 HETATM 27 C CBC Y01 . . . P 4 128.601 125.407 90.308 1 67.3 ? CBC Y01 310 A 1 HETATM 28 O OAW Y01 . . . P 4 129.067 124.92 89.028 1 67.3 ? OAW Y01 310 A 1 HETATM 29 C CAY Y01 . . . P 4 129.33 125.894 88.108 1 67.3 ? CAY Y01 310 A 1 HETATM 30 O OAG Y01 . . . P 4 128.731 126.966 88.033 1 67.3 ? OAG Y01 310 A 1 HETATM 31 C CAM Y01 . . . P 4 130.415 125.532 87.089 1 67.3 ? CAM Y01 310 A 1 HETATM 32 C CAL Y01 . . . P 4 130.16 126.28 85.778 1 67.3 ? CAL Y01 310 A 1 HETATM 33 C CAX Y01 . . . P 4 130.351 125.332 84.591 1 67.3 ? CAX Y01 310 A 1 HETATM 34 O OAH Y01 . . . P 4 129.983 124.147 84.745 1 67.3 ? OAH Y01 310 A 1 HETATM 35 O OAF Y01 . . . P 4 130.857 125.814 83.555 1 67.3 ? OAF Y01 310 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #