data_6Y9C # _model_server_result.job_id laWGPgEbCTi9tRmrUswflg _model_server_result.datetime_utc '2024-11-14 23:44:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6Y9C # _exptl.entry_id 6Y9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.207 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARNITINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Y9C _cell.length_a 91.242 _cell.length_b 91.242 _cell.length_c 87.366 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -91.242 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -45.621 -79.01789 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 106 A CYS 86 1_555 E FE1 FES . A FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 A ND1 HIS 108 A HIS 88 1_555 E FE2 FES . A FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 A SG CYS 126 A CYS 106 1_555 E FE1 FES . A FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc4 A ND1 HIS 129 A HIS 109 1_555 E FE2 FES . A FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc5 A NE2 HIS 228 A HIS 208 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc6 A NE2 HIS 233 A HIS 213 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc7 A OD1 ASP 343 A ASP 323 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 A OD2 ASP 343 A ASP 323 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc9 B FE FE . A FE 401 1_555 D N SCN . A SCN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc10 B FE FE . A FE 401 1_555 F O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? # _chem_comp.formula 'C7 H16 N O3 1' _chem_comp.formula_weight 162.207 _chem_comp.id 152 _chem_comp.mon_nstd_flag . _chem_comp.name CARNITINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3-CARBOXY-2-(R)-HYDROXY-PROPYL)-TRIMETHYL-AMMONIUM # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A 152 doub 1 n n C1 O1B 152 sing 2 n n C1 C2 152 sing 3 n n O1B H1B 152 sing 4 n n C2 C3 152 sing 5 n n C2 H21 152 sing 6 n n C2 H22 152 sing 7 n n C3 O3 152 sing 8 n n C3 C4 152 sing 9 n n C3 H3 152 sing 10 n n O3 HO3 152 sing 11 n n C4 N5 152 sing 12 n n C4 H41 152 sing 13 n n C4 H42 152 sing 14 n n N5 C5A 152 sing 15 n n N5 C5B 152 sing 16 n n N5 C5C 152 sing 17 n n C5A H5A1 152 sing 18 n n C5A H5A2 152 sing 19 n n C5A H5A3 152 sing 20 n n C5B H5B1 152 sing 21 n n C5B H5B2 152 sing 22 n n C5B H5B3 152 sing 23 n n C5C H5C1 152 sing 24 n n C5C H5C2 152 sing 25 n n C5C H5C3 152 sing 26 n n # _atom_sites.entry_id 6Y9C _atom_sites.fract_transf_matrix[1][1] 0.01096 _atom_sites.fract_transf_matrix[1][2] 0.006328 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 401 381 FE FE . C 3 152 A 1 402 382 152 152 . D 4 SCN A 1 403 383 SCN SCN . E 5 FES A 1 404 384 FES FES . F 6 HOH A 1 501 40 HOH HOH . F 6 HOH A 2 502 48 HOH HOH . F 6 HOH A 3 503 36 HOH HOH . F 6 HOH A 4 504 23 HOH HOH . F 6 HOH A 5 505 85 HOH HOH . F 6 HOH A 6 506 7 HOH HOH . F 6 HOH A 7 507 51 HOH HOH . F 6 HOH A 8 508 62 HOH HOH . F 6 HOH A 9 509 42 HOH HOH . F 6 HOH A 10 510 26 HOH HOH . F 6 HOH A 11 511 10 HOH HOH . F 6 HOH A 12 512 15 HOH HOH . F 6 HOH A 13 513 39 HOH HOH . F 6 HOH A 14 514 84 HOH HOH . F 6 HOH A 15 515 37 HOH HOH . F 6 HOH A 16 516 75 HOH HOH . F 6 HOH A 17 517 57 HOH HOH . F 6 HOH A 18 518 61 HOH HOH . F 6 HOH A 19 519 92 HOH HOH . F 6 HOH A 20 520 58 HOH HOH . F 6 HOH A 21 521 66 HOH HOH . F 6 HOH A 22 522 67 HOH HOH . F 6 HOH A 23 523 8 HOH HOH . F 6 HOH A 24 524 45 HOH HOH . F 6 HOH A 25 525 60 HOH HOH . F 6 HOH A 26 526 9 HOH HOH . F 6 HOH A 27 527 12 HOH HOH . F 6 HOH A 28 528 17 HOH HOH . F 6 HOH A 29 529 56 HOH HOH . F 6 HOH A 30 530 77 HOH HOH . F 6 HOH A 31 531 87 HOH HOH . F 6 HOH A 32 532 32 HOH HOH . F 6 HOH A 33 533 89 HOH HOH . F 6 HOH A 34 534 19 HOH HOH . F 6 HOH A 35 535 21 HOH HOH . F 6 HOH A 36 536 43 HOH HOH . F 6 HOH A 37 537 11 HOH HOH . F 6 HOH A 38 538 99 HOH HOH . F 6 HOH A 39 539 59 HOH HOH . F 6 HOH A 40 540 5 HOH HOH . F 6 HOH A 41 541 95 HOH HOH . F 6 HOH A 42 542 14 HOH HOH . F 6 HOH A 43 543 4 HOH HOH . F 6 HOH A 44 544 3 HOH HOH . F 6 HOH A 45 545 20 HOH HOH . F 6 HOH A 46 546 76 HOH HOH . F 6 HOH A 47 547 33 HOH HOH . F 6 HOH A 48 548 22 HOH HOH . F 6 HOH A 49 549 2 HOH HOH . F 6 HOH A 50 550 100 HOH HOH . F 6 HOH A 51 551 38 HOH HOH . F 6 HOH A 52 552 88 HOH HOH . F 6 HOH A 53 553 53 HOH HOH . F 6 HOH A 54 554 49 HOH HOH . F 6 HOH A 55 555 98 HOH HOH . F 6 HOH A 56 556 35 HOH HOH . F 6 HOH A 57 557 46 HOH HOH . F 6 HOH A 58 558 34 HOH HOH . F 6 HOH A 59 559 47 HOH HOH . F 6 HOH A 60 560 31 HOH HOH . F 6 HOH A 61 561 24 HOH HOH . F 6 HOH A 62 562 30 HOH HOH . F 6 HOH A 63 563 65 HOH HOH . F 6 HOH A 64 564 94 HOH HOH . F 6 HOH A 65 565 18 HOH HOH . F 6 HOH A 66 566 91 HOH HOH . F 6 HOH A 67 567 68 HOH HOH . F 6 HOH A 68 568 6 HOH HOH . F 6 HOH A 69 569 70 HOH HOH . F 6 HOH A 70 570 82 HOH HOH . F 6 HOH A 71 571 73 HOH HOH . F 6 HOH A 72 572 41 HOH HOH . F 6 HOH A 73 573 54 HOH HOH . F 6 HOH A 74 574 86 HOH HOH . F 6 HOH A 75 575 97 HOH HOH . F 6 HOH A 76 576 52 HOH HOH . F 6 HOH A 77 577 25 HOH HOH . F 6 HOH A 78 578 72 HOH HOH . F 6 HOH A 79 579 79 HOH HOH . F 6 HOH A 80 580 13 HOH HOH . F 6 HOH A 81 581 16 HOH HOH . F 6 HOH A 82 582 55 HOH HOH . F 6 HOH A 83 583 78 HOH HOH . F 6 HOH A 84 584 29 HOH HOH . F 6 HOH A 85 585 44 HOH HOH . F 6 HOH A 86 586 93 HOH HOH . F 6 HOH A 87 587 83 HOH HOH . F 6 HOH A 88 588 81 HOH HOH . F 6 HOH A 89 589 64 HOH HOH . F 6 HOH A 90 590 96 HOH HOH . F 6 HOH A 91 591 1 HOH HOH . F 6 HOH A 92 592 28 HOH HOH . F 6 HOH A 93 593 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 152 . . . C 3 -15.78 -30.246 -11.188 1 37.83 ? C1 152 402 A 1 HETATM 2 O O1A 152 . . . C 3 -14.635 -30.158 -11.716 1 42.13 ? O1A 152 402 A 1 HETATM 3 O O1B 152 . . . C 3 -16.718 -29.509 -11.578 1 28.25 ? O1B 152 402 A 1 HETATM 4 C C2 152 . . . C 3 -16.02 -31.263 -10.079 1 36.71 ? C2 152 402 A 1 HETATM 5 C C3 152 . . . C 3 -14.687 -31.926 -9.717 1 39.79 ? C3 152 402 A 1 HETATM 6 O O3 152 . . . C 3 -13.683 -30.946 -9.621 1 31.26 ? O3 152 402 A 1 HETATM 7 C C4 152 . . . C 3 -14.902 -32.677 -8.399 1 41.61 ? C4 152 402 A 1 HETATM 8 N N5 152 . . . C 3 -13.666 -33.217 -7.857 1 43.56 ? N5 152 402 A 1 HETATM 9 C C5A 152 . . . C 3 -12.717 -33.542 -8.91 1 45.38 ? C5A 152 402 A 1 HETATM 10 C C5B 152 . . . C 3 -13.073 -32.246 -6.964 1 39.07 ? C5B 152 402 A 1 HETATM 11 C C5C 152 . . . C 3 -13.975 -34.427 -7.108 1 44.27 ? C5C 152 402 A 1 HETATM 12 H H21 152 . . . C 3 -16.646 -31.937 -10.385 1 44.23 ? H21 152 402 A 1 HETATM 13 H H22 152 . . . C 3 -16.383 -30.814 -9.299 1 44.23 ? H22 152 402 A 1 HETATM 14 H H3 152 . . . C 3 -14.396 -32.553 -10.397 1 47.92 ? H3 152 402 A 1 HETATM 15 H HO3 152 . . . C 3 -14.006 -30.244 -9.267 1 37.7 ? HO3 152 402 A 1 HETATM 16 H H41 152 . . . C 3 -15.519 -33.409 -8.556 1 50.11 ? H41 152 402 A 1 HETATM 17 H H42 152 . . . C 3 -15.285 -32.065 -7.751 1 50.11 ? H42 152 402 A 1 HETATM 18 H H5A1 152 . . . C 3 -12.239 -32.741 -9.174 1 54.64 ? H5A1 152 402 A 1 HETATM 19 H H5A2 152 . . . C 3 -13.193 -33.901 -9.675 1 54.64 ? H5A2 152 402 A 1 HETATM 20 H H5A3 152 . . . C 3 -12.086 -34.203 -8.584 1 54.64 ? H5A3 152 402 A 1 HETATM 21 H H5B1 152 . . . C 3 -12.928 -31.414 -7.44 1 47.06 ? H5B1 152 402 A 1 HETATM 22 H H5B2 152 . . . C 3 -12.223 -32.584 -6.638 1 47.06 ? H5B2 152 402 A 1 HETATM 23 H H5B3 152 . . . C 3 -13.668 -32.09 -6.214 1 47.06 ? H5B3 152 402 A 1 HETATM 24 H H5C1 152 . . . C 3 -14.935 -34.499 -6.991 1 53.3 ? H5C1 152 402 A 1 HETATM 25 H H5C2 152 . . . C 3 -13.545 -34.388 -6.239 1 53.3 ? H5C2 152 402 A 1 HETATM 26 H H5C3 152 . . . C 3 -13.65 -35.2 -7.595 1 53.3 ? H5C3 152 402 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 26 #