data_6Y9C # _model_server_result.job_id y0NNioNBfATdcF6lrrqnQg _model_server_result.datetime_utc '2024-11-14 23:45:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6Y9C # _exptl.entry_id 6Y9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Y9C _cell.length_a 91.242 _cell.length_b 91.242 _cell.length_c 87.366 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -91.242 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -45.621 -79.01789 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 106 A CYS 86 1_555 E FE1 FES . A FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 A ND1 HIS 108 A HIS 88 1_555 E FE2 FES . A FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 A SG CYS 126 A CYS 106 1_555 E FE1 FES . A FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc4 A ND1 HIS 129 A HIS 109 1_555 E FE2 FES . A FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc5 A NE2 HIS 228 A HIS 208 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc6 A NE2 HIS 233 A HIS 213 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc7 A OD1 ASP 343 A ASP 323 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 A OD2 ASP 343 A ASP 323 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc9 B FE FE . A FE 401 1_555 D N SCN . A SCN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc10 B FE FE . A FE 401 1_555 F O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 109 n n FE1 S2 FES sing 110 n n FE2 S1 FES sing 111 n n FE2 S2 FES sing 112 n n # _atom_sites.entry_id 6Y9C _atom_sites.fract_transf_matrix[1][1] 0.01096 _atom_sites.fract_transf_matrix[1][2] 0.006328 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 401 381 FE FE . C 3 152 A 1 402 382 152 152 . D 4 SCN A 1 403 383 SCN SCN . E 5 FES A 1 404 384 FES FES . F 6 HOH A 1 501 40 HOH HOH . F 6 HOH A 2 502 48 HOH HOH . F 6 HOH A 3 503 36 HOH HOH . F 6 HOH A 4 504 23 HOH HOH . F 6 HOH A 5 505 85 HOH HOH . F 6 HOH A 6 506 7 HOH HOH . F 6 HOH A 7 507 51 HOH HOH . F 6 HOH A 8 508 62 HOH HOH . F 6 HOH A 9 509 42 HOH HOH . F 6 HOH A 10 510 26 HOH HOH . F 6 HOH A 11 511 10 HOH HOH . F 6 HOH A 12 512 15 HOH HOH . F 6 HOH A 13 513 39 HOH HOH . F 6 HOH A 14 514 84 HOH HOH . F 6 HOH A 15 515 37 HOH HOH . F 6 HOH A 16 516 75 HOH HOH . F 6 HOH A 17 517 57 HOH HOH . F 6 HOH A 18 518 61 HOH HOH . F 6 HOH A 19 519 92 HOH HOH . F 6 HOH A 20 520 58 HOH HOH . F 6 HOH A 21 521 66 HOH HOH . F 6 HOH A 22 522 67 HOH HOH . F 6 HOH A 23 523 8 HOH HOH . F 6 HOH A 24 524 45 HOH HOH . F 6 HOH A 25 525 60 HOH HOH . F 6 HOH A 26 526 9 HOH HOH . F 6 HOH A 27 527 12 HOH HOH . F 6 HOH A 28 528 17 HOH HOH . F 6 HOH A 29 529 56 HOH HOH . F 6 HOH A 30 530 77 HOH HOH . F 6 HOH A 31 531 87 HOH HOH . F 6 HOH A 32 532 32 HOH HOH . F 6 HOH A 33 533 89 HOH HOH . F 6 HOH A 34 534 19 HOH HOH . F 6 HOH A 35 535 21 HOH HOH . F 6 HOH A 36 536 43 HOH HOH . F 6 HOH A 37 537 11 HOH HOH . F 6 HOH A 38 538 99 HOH HOH . F 6 HOH A 39 539 59 HOH HOH . F 6 HOH A 40 540 5 HOH HOH . F 6 HOH A 41 541 95 HOH HOH . F 6 HOH A 42 542 14 HOH HOH . F 6 HOH A 43 543 4 HOH HOH . F 6 HOH A 44 544 3 HOH HOH . F 6 HOH A 45 545 20 HOH HOH . F 6 HOH A 46 546 76 HOH HOH . F 6 HOH A 47 547 33 HOH HOH . F 6 HOH A 48 548 22 HOH HOH . F 6 HOH A 49 549 2 HOH HOH . F 6 HOH A 50 550 100 HOH HOH . F 6 HOH A 51 551 38 HOH HOH . F 6 HOH A 52 552 88 HOH HOH . F 6 HOH A 53 553 53 HOH HOH . F 6 HOH A 54 554 49 HOH HOH . F 6 HOH A 55 555 98 HOH HOH . F 6 HOH A 56 556 35 HOH HOH . F 6 HOH A 57 557 46 HOH HOH . F 6 HOH A 58 558 34 HOH HOH . F 6 HOH A 59 559 47 HOH HOH . F 6 HOH A 60 560 31 HOH HOH . F 6 HOH A 61 561 24 HOH HOH . F 6 HOH A 62 562 30 HOH HOH . F 6 HOH A 63 563 65 HOH HOH . F 6 HOH A 64 564 94 HOH HOH . F 6 HOH A 65 565 18 HOH HOH . F 6 HOH A 66 566 91 HOH HOH . F 6 HOH A 67 567 68 HOH HOH . F 6 HOH A 68 568 6 HOH HOH . F 6 HOH A 69 569 70 HOH HOH . F 6 HOH A 70 570 82 HOH HOH . F 6 HOH A 71 571 73 HOH HOH . F 6 HOH A 72 572 41 HOH HOH . F 6 HOH A 73 573 54 HOH HOH . F 6 HOH A 74 574 86 HOH HOH . F 6 HOH A 75 575 97 HOH HOH . F 6 HOH A 76 576 52 HOH HOH . F 6 HOH A 77 577 25 HOH HOH . F 6 HOH A 78 578 72 HOH HOH . F 6 HOH A 79 579 79 HOH HOH . F 6 HOH A 80 580 13 HOH HOH . F 6 HOH A 81 581 16 HOH HOH . F 6 HOH A 82 582 55 HOH HOH . F 6 HOH A 83 583 78 HOH HOH . F 6 HOH A 84 584 29 HOH HOH . F 6 HOH A 85 585 44 HOH HOH . F 6 HOH A 86 586 93 HOH HOH . F 6 HOH A 87 587 83 HOH HOH . F 6 HOH A 88 588 81 HOH HOH . F 6 HOH A 89 589 64 HOH HOH . F 6 HOH A 90 590 96 HOH HOH . F 6 HOH A 91 591 1 HOH HOH . F 6 HOH A 92 592 28 HOH HOH . F 6 HOH A 93 593 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . E 5 -38.686 2.345 -3.704 1 20.56 ? FE1 FES 404 A 1 HETATM 2 FE FE2 FES . . . E 5 -41.086 3.535 -3.019 1 31.84 ? FE2 FES 404 A 1 HETATM 3 S S1 FES . . . E 5 -40.507 1.374 -2.779 1 27.71 ? S1 FES 404 A 1 HETATM 4 S S2 FES . . . E 5 -39.368 4.427 -4.075 1 30.88 ? S2 FES 404 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 4 #