data_6Y9R
#
_model_server_result.job_id            '_dj05TEJy8LIJ4AcwPIa6Q' 
_model_server_result.datetime_utc      '2024-12-26 14:32:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y9r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6Y9R 
#
_exptl.entry_id    6Y9R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              451.561 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[[1-(2-methoxyethyl)piperidin-4-yl]methyl]-5-(5-propan-2-yloxypyridin-3-yl)-1~{H}-indazole-3-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Y9R 
_cell.length_a            84.581 
_cell.length_b            108.291 
_cell.length_c            103.474 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y9R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 181 A SER 215 1_555 A N PTR 182 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 A C PTR 182 A PTR 216 1_555 A N ILE 183 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
#
_chem_comp.formula           'C25 H33 N5 O3' 
_chem_comp.formula_weight    451.561 
_chem_comp.id                OH8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[[1-(2-methoxyethyl)piperidin-4-yl]methyl]-5-(5-propan-2-yloxypyridin-3-yl)-1~{H}-indazole-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C32 O31 OH8 sing 256 n n 
O31 C30 OH8 sing 257 n n 
C30 C29 OH8 sing 258 n n 
C29 N26 OH8 sing 259 n n 
N26 C25 OH8 sing 260 n n 
N26 C27 OH8 sing 261 n n 
C25 C24 OH8 sing 262 n n 
C27 C28 OH8 sing 263 n n 
C24 C23 OH8 sing 264 n n 
C28 C23 OH8 sing 265 n n 
C23 C22 OH8 sing 266 n n 
C9 C8 OH8 sing 267 n n 
C22 N21 OH8 sing 268 n n 
N21 C20 OH8 sing 269 n n 
O33 C20 OH8 doub 270 n n 
C8 O7 OH8 sing 271 n n 
C8 C10 OH8 sing 272 n n 
C20 C19 OH8 sing 273 n n 
C19 N18 OH8 doub 274 n y 
C19 C13 OH8 sing 275 n y 
O7 C6 OH8 sing 276 n n 
N18 N17 OH8 sing 277 n y 
C13 C12 OH8 doub 278 n y 
C13 C14 OH8 sing 279 n y 
N17 C14 OH8 sing 280 n y 
C1 C6 OH8 doub 281 n y 
C1 C2 OH8 sing 282 n y 
C12 C11 OH8 sing 283 n y 
C6 C5 OH8 sing 284 n y 
C14 C15 OH8 doub 285 n y 
C11 C2 OH8 sing 286 n n 
C11 C16 OH8 doub 287 n y 
C15 C16 OH8 sing 288 n y 
C2 C3 OH8 doub 289 n y 
C5 N4 OH8 doub 290 n y 
C3 N4 OH8 sing 291 n y 
C1 H1 OH8 sing 292 n n 
C3 H2 OH8 sing 293 n n 
C5 H3 OH8 sing 294 n n 
C8 H4 OH8 sing 295 n n 
C12 H5 OH8 sing 296 n n 
C15 H6 OH8 sing 297 n n 
C16 H7 OH8 sing 298 n n 
C23 H8 OH8 sing 299 n n 
C24 H9 OH8 sing 300 n n 
C24 H10 OH8 sing 301 n n 
C27 H11 OH8 sing 302 n n 
C27 H12 OH8 sing 303 n n 
C30 H13 OH8 sing 304 n n 
C30 H14 OH8 sing 305 n n 
C32 H15 OH8 sing 306 n n 
C32 H16 OH8 sing 307 n n 
C32 H17 OH8 sing 308 n n 
C9 H18 OH8 sing 309 n n 
C9 H19 OH8 sing 310 n n 
C9 H20 OH8 sing 311 n n 
C10 H21 OH8 sing 312 n n 
C10 H22 OH8 sing 313 n n 
C10 H23 OH8 sing 314 n n 
N17 H24 OH8 sing 315 n n 
N21 H25 OH8 sing 316 n n 
C22 H26 OH8 sing 317 n n 
C22 H27 OH8 sing 318 n n 
C25 H28 OH8 sing 319 n n 
C25 H29 OH8 sing 320 n n 
C28 H31 OH8 sing 321 n n 
C28 H32 OH8 sing 322 n n 
C29 H33 OH8 sing 323 n n 
C29 H34 OH8 sing 324 n n 
#
_atom_sites.entry_id                     6Y9R 
_atom_sites.fract_transf_matrix[1][1]    0.011823 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009234 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009664 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 OH8 A 1 401 1 OH8 INX . 
C 3 ACT A 1 402 1 ACT ACT . 
D 4 GOL A 1 403 2 GOL GOL . 
E 4 GOL A 1 404 3 GOL GOL . 
F 5 HOH A 1 501 117 HOH HOH . 
F 5 HOH A 2 502 126 HOH HOH . 
F 5 HOH A 3 503 51 HOH HOH . 
F 5 HOH A 4 504 127 HOH HOH . 
F 5 HOH A 5 505 18 HOH HOH . 
F 5 HOH A 6 506 65 HOH HOH . 
F 5 HOH A 7 507 23 HOH HOH . 
F 5 HOH A 8 508 128 HOH HOH . 
F 5 HOH A 9 509 38 HOH HOH . 
F 5 HOH A 10 510 13 HOH HOH . 
F 5 HOH A 11 511 17 HOH HOH . 
F 5 HOH A 12 512 71 HOH HOH . 
F 5 HOH A 13 513 97 HOH HOH . 
F 5 HOH A 14 514 60 HOH HOH . 
F 5 HOH A 15 515 2 HOH HOH . 
F 5 HOH A 16 516 16 HOH HOH . 
F 5 HOH A 17 517 59 HOH HOH . 
F 5 HOH A 18 518 32 HOH HOH . 
F 5 HOH A 19 519 133 HOH HOH . 
F 5 HOH A 20 520 19 HOH HOH . 
F 5 HOH A 21 521 14 HOH HOH . 
F 5 HOH A 22 522 11 HOH HOH . 
F 5 HOH A 23 523 112 HOH HOH . 
F 5 HOH A 24 524 95 HOH HOH . 
F 5 HOH A 25 525 102 HOH HOH . 
F 5 HOH A 26 526 75 HOH HOH . 
F 5 HOH A 27 527 7 HOH HOH . 
F 5 HOH A 28 528 5 HOH HOH . 
F 5 HOH A 29 529 87 HOH HOH . 
F 5 HOH A 30 530 54 HOH HOH . 
F 5 HOH A 31 531 56 HOH HOH . 
F 5 HOH A 32 532 37 HOH HOH . 
F 5 HOH A 33 533 9 HOH HOH . 
F 5 HOH A 34 534 92 HOH HOH . 
F 5 HOH A 35 535 3 HOH HOH . 
F 5 HOH A 36 536 61 HOH HOH . 
F 5 HOH A 37 537 70 HOH HOH . 
F 5 HOH A 38 538 84 HOH HOH . 
F 5 HOH A 39 539 28 HOH HOH . 
F 5 HOH A 40 540 85 HOH HOH . 
F 5 HOH A 41 541 72 HOH HOH . 
F 5 HOH A 42 542 88 HOH HOH . 
F 5 HOH A 43 543 31 HOH HOH . 
F 5 HOH A 44 544 86 HOH HOH . 
F 5 HOH A 45 545 93 HOH HOH . 
F 5 HOH A 46 546 89 HOH HOH . 
F 5 HOH A 47 547 83 HOH HOH . 
F 5 HOH A 48 548 50 HOH HOH . 
F 5 HOH A 49 549 39 HOH HOH . 
F 5 HOH A 50 550 119 HOH HOH . 
F 5 HOH A 51 551 91 HOH HOH . 
F 5 HOH A 52 552 21 HOH HOH . 
F 5 HOH A 53 553 74 HOH HOH . 
F 5 HOH A 54 554 29 HOH HOH . 
F 5 HOH A 55 555 8 HOH HOH . 
F 5 HOH A 56 556 121 HOH HOH . 
F 5 HOH A 57 557 15 HOH HOH . 
F 5 HOH A 58 558 58 HOH HOH . 
F 5 HOH A 59 559 120 HOH HOH . 
F 5 HOH A 60 560 24 HOH HOH . 
F 5 HOH A 61 561 57 HOH HOH . 
F 5 HOH A 62 562 1 HOH HOH . 
F 5 HOH A 63 563 45 HOH HOH . 
F 5 HOH A 64 564 30 HOH HOH . 
F 5 HOH A 65 565 46 HOH HOH . 
F 5 HOH A 66 566 34 HOH HOH . 
F 5 HOH A 67 567 67 HOH HOH . 
F 5 HOH A 68 568 99 HOH HOH . 
F 5 HOH A 69 569 25 HOH HOH . 
F 5 HOH A 70 570 82 HOH HOH . 
F 5 HOH A 71 571 10 HOH HOH . 
F 5 HOH A 72 572 106 HOH HOH . 
F 5 HOH A 73 573 107 HOH HOH . 
F 5 HOH A 74 574 63 HOH HOH . 
F 5 HOH A 75 575 22 HOH HOH . 
F 5 HOH A 76 576 79 HOH HOH . 
F 5 HOH A 77 577 110 HOH HOH . 
F 5 HOH A 78 578 66 HOH HOH . 
F 5 HOH A 79 579 6 HOH HOH . 
F 5 HOH A 80 580 105 HOH HOH . 
F 5 HOH A 81 581 42 HOH HOH . 
F 5 HOH A 82 582 129 HOH HOH . 
F 5 HOH A 83 583 49 HOH HOH . 
F 5 HOH A 84 584 43 HOH HOH . 
F 5 HOH A 85 585 68 HOH HOH . 
F 5 HOH A 86 586 20 HOH HOH . 
F 5 HOH A 87 587 36 HOH HOH . 
F 5 HOH A 88 588 80 HOH HOH . 
F 5 HOH A 89 589 130 HOH HOH . 
F 5 HOH A 90 590 4 HOH HOH . 
F 5 HOH A 91 591 12 HOH HOH . 
F 5 HOH A 92 592 41 HOH HOH . 
F 5 HOH A 93 593 35 HOH HOH . 
F 5 HOH A 94 594 40 HOH HOH . 
F 5 HOH A 95 595 64 HOH HOH . 
F 5 HOH A 96 596 100 HOH HOH . 
F 5 HOH A 97 597 55 HOH HOH . 
F 5 HOH A 98 598 111 HOH HOH . 
F 5 HOH A 99 599 53 HOH HOH . 
F 5 HOH A 100 600 81 HOH HOH . 
F 5 HOH A 101 601 98 HOH HOH . 
F 5 HOH A 102 602 47 HOH HOH . 
F 5 HOH A 103 603 33 HOH HOH . 
F 5 HOH A 104 604 52 HOH HOH . 
F 5 HOH A 105 605 113 HOH HOH . 
F 5 HOH A 106 606 118 HOH HOH . 
F 5 HOH A 107 607 131 HOH HOH . 
F 5 HOH A 108 608 123 HOH HOH . 
F 5 HOH A 109 609 122 HOH HOH . 
F 5 HOH A 110 610 124 HOH HOH . 
F 5 HOH A 111 611 114 HOH HOH . 
F 5 HOH A 112 612 73 HOH HOH . 
F 5 HOH A 113 613 77 HOH HOH . 
F 5 HOH A 114 614 108 HOH HOH . 
F 5 HOH A 115 615 94 HOH HOH . 
F 5 HOH A 116 616 48 HOH HOH . 
F 5 HOH A 117 617 62 HOH HOH . 
F 5 HOH A 118 618 76 HOH HOH . 
F 5 HOH A 119 619 90 HOH HOH . 
F 5 HOH A 120 620 103 HOH HOH . 
F 5 HOH A 121 621 125 HOH HOH . 
F 5 HOH A 122 622 115 HOH HOH . 
F 5 HOH A 123 623 96 HOH HOH . 
F 5 HOH A 124 624 78 HOH HOH . 
F 5 HOH A 125 625 109 HOH HOH . 
F 5 HOH A 126 626 26 HOH HOH . 
F 5 HOH A 127 627 104 HOH HOH . 
F 5 HOH A 128 628 44 HOH HOH . 
F 5 HOH A 129 629 132 HOH HOH . 
F 5 HOH A 130 630 116 HOH HOH . 
F 5 HOH A 131 631 101 HOH HOH . 
F 5 HOH A 132 632 27 HOH HOH . 
F 5 HOH A 133 633 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OH8 . . . B 2 -11.306 -14.896 -1.989 1 44.82 ? C1 OH8 401 A 1 
HETATM 2 C C2 OH8 . . . B 2 -10.597 -15.966 -1.456 1 37.08 ? C2 OH8 401 A 1 
HETATM 3 C C3 OH8 . . . B 2 -9.421 -15.677 -0.773 1 39.14 ? C3 OH8 401 A 1 
HETATM 4 C C5 OH8 . . . B 2 -9.622 -13.425 -1.147 1 41.01 ? C5 OH8 401 A 1 
HETATM 5 C C6 OH8 . . . B 2 -10.807 -13.604 -1.837 1 48.59 ? C6 OH8 401 A 1 
HETATM 6 C C8 OH8 . . . B 2 -12.8 -12.565 -2.737 1 56.26 ? C8 OH8 401 A 1 
HETATM 7 C C11 OH8 . . . B 2 -11.097 -17.355 -1.595 1 36.19 ? C11 OH8 401 A 1 
HETATM 8 C C12 OH8 . . . B 2 -12.415 -17.614 -1.948 1 31.26 ? C12 OH8 401 A 1 
HETATM 9 C C15 OH8 . . . B 2 -10.653 -19.717 -1.465 1 35.6 ? C15 OH8 401 A 1 
HETATM 10 C C16 OH8 . . . B 2 -10.229 -18.433 -1.36 1 38.27 ? C16 OH8 401 A 1 
HETATM 11 C C19 OH8 . . . B 2 -14.113 -19.587 -2.404 1 39.97 ? C19 OH8 401 A 1 
HETATM 12 C C23 OH8 . . . B 2 -18.1 -18.667 -4.509 1 41.81 ? C23 OH8 401 A 1 
HETATM 13 C C24 OH8 . . . B 2 -17.919 -19.817 -5.475 1 54.97 ? C24 OH8 401 A 1 
HETATM 14 C C27 OH8 . . . B 2 -19.892 -17.788 -6.016 1 48.98 ? C27 OH8 401 A 1 
HETATM 15 C C30 OH8 . . . B 2 -20.129 -19.762 -9.209 1 64.9 ? C30 OH8 401 A 1 
HETATM 16 C C32 OH8 . . . B 2 -20.328 -20.469 -11.469 0 56.28 ? C32 OH8 401 A 1 
HETATM 17 N N4 OH8 . . . B 2 -8.978 -14.45 -0.648 1 37.9 ? N4 OH8 401 A 1 
HETATM 18 O O7 OH8 . . . B 2 -11.431 -12.51 -2.342 1 51.53 ? O7 OH8 401 A 1 
HETATM 19 C C9 OH8 . . . B 2 -13.008 -11.603 -3.895 1 59.11 ? C9 OH8 401 A 1 
HETATM 20 C C10 OH8 . . . B 2 -13.693 -12.231 -1.544 1 62.17 ? C10 OH8 401 A 1 
HETATM 21 C C13 OH8 . . . B 2 -12.85 -18.926 -2.063 1 37.54 ? C13 OH8 401 A 1 
HETATM 22 C C14 OH8 . . . B 2 -11.963 -19.991 -1.815 1 37.35 ? C14 OH8 401 A 1 
HETATM 23 N N17 OH8 . . . B 2 -12.68 -21.134 -1.993 1 37.84 ? N17 OH8 401 A 1 
HETATM 24 N N18 OH8 . . . B 2 -13.894 -20.877 -2.316 1 41.13 ? N18 OH8 401 A 1 
HETATM 25 C C20 OH8 . . . B 2 -15.386 -18.931 -2.718 1 39.53 ? C20 OH8 401 A 1 
HETATM 26 N N21 OH8 . . . B 2 -16.489 -19.675 -2.845 1 32.74 ? N21 OH8 401 A 1 
HETATM 27 C C22 OH8 . . . B 2 -17.82 -19.123 -3.089 1 35.76 ? C22 OH8 401 A 1 
HETATM 28 C C25 OH8 . . . B 2 -18.24 -19.292 -6.875 1 54.58 ? C25 OH8 401 A 1 
HETATM 29 N N26 OH8 . . . B 2 -19.654 -18.89 -6.941 1 53.27 ? N26 OH8 401 A 1 
HETATM 30 C C28 OH8 . . . B 2 -19.571 -18.236 -4.586 1 41.74 ? C28 OH8 401 A 1 
HETATM 31 C C29 OH8 . . . B 2 -20.029 -18.516 -8.321 1 53.06 ? C29 OH8 401 A 1 
HETATM 32 O O31 OH8 . . . B 2 -20.47 -19.41 -10.521 0 62.41 ? O31 OH8 401 A 1 
HETATM 33 O O33 OH8 . . . B 2 -15.415 -17.731 -2.832 1 40.53 ? O33 OH8 401 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           33 
#