data_6Y9T
#
_model_server_result.job_id            eOSoVLNuUgvgAMLRRRGGsQ 
_model_server_result.datetime_utc      '2025-08-31 02:48:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y9t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    6Y9T 
#
_exptl.entry_id    6Y9T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.95 
_cell.angle_gamma         90 
_cell.entry_id            6Y9T 
_cell.length_a            73.21 
_cell.length_b            105.3 
_cell.length_c            92.23 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y9T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 40 A ASP 20 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? 
metalc ? metalc2 A OD1 ASN 42 A ASN 22 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc3 A OD1 ASP 44 A ASP 24 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? 
metalc ? metalc4 A OD2 ASP 44 A ASP 24 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? 
metalc ? metalc5 A O ILE 46 A ILE 26 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc6 A OD2 ASP 48 A ASP 28 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc7 B OD1 ASP 40 B ASP 20 1_555 D CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc8 B OD1 ASN 42 B ASN 22 1_555 D CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc9 B OD1 ASP 44 B ASP 24 1_555 D CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? 
metalc ? metalc10 B O ILE 46 B ILE 26 1_555 D CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc11 B OD2 ASP 48 B ASP 28 1_555 D CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6Y9T 
_atom_sites.fract_transf_matrix[1][1]    0.013659 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001666 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009497 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010923 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 601 1 CA CA . 
D 2 CA B 1 601 2 CA CA . 
E 3 HOH A 1 701 116 HOH HOH . 
E 3 HOH A 2 702 226 HOH HOH . 
E 3 HOH A 3 703 72 HOH HOH . 
E 3 HOH A 4 704 147 HOH HOH . 
E 3 HOH A 5 705 52 HOH HOH . 
E 3 HOH A 6 706 123 HOH HOH . 
E 3 HOH A 7 707 179 HOH HOH . 
E 3 HOH A 8 708 130 HOH HOH . 
E 3 HOH A 9 709 219 HOH HOH . 
E 3 HOH A 10 710 109 HOH HOH . 
E 3 HOH A 11 711 66 HOH HOH . 
E 3 HOH A 12 712 50 HOH HOH . 
E 3 HOH A 13 713 24 HOH HOH . 
E 3 HOH A 14 714 107 HOH HOH . 
E 3 HOH A 15 715 51 HOH HOH . 
E 3 HOH A 16 716 190 HOH HOH . 
E 3 HOH A 17 717 148 HOH HOH . 
E 3 HOH A 18 718 207 HOH HOH . 
E 3 HOH A 19 719 212 HOH HOH . 
E 3 HOH A 20 720 242 HOH HOH . 
E 3 HOH A 21 721 166 HOH HOH . 
E 3 HOH A 22 722 65 HOH HOH . 
E 3 HOH A 23 723 232 HOH HOH . 
E 3 HOH A 24 724 211 HOH HOH . 
E 3 HOH A 25 725 54 HOH HOH . 
E 3 HOH A 26 726 94 HOH HOH . 
E 3 HOH A 27 727 235 HOH HOH . 
E 3 HOH A 28 728 14 HOH HOH . 
E 3 HOH A 29 729 158 HOH HOH . 
E 3 HOH A 30 730 44 HOH HOH . 
E 3 HOH A 31 731 108 HOH HOH . 
E 3 HOH A 32 732 218 HOH HOH . 
E 3 HOH A 33 733 25 HOH HOH . 
E 3 HOH A 34 734 204 HOH HOH . 
E 3 HOH A 35 735 33 HOH HOH . 
E 3 HOH A 36 736 170 HOH HOH . 
E 3 HOH A 37 737 216 HOH HOH . 
E 3 HOH A 38 738 230 HOH HOH . 
E 3 HOH A 39 739 217 HOH HOH . 
E 3 HOH A 40 740 200 HOH HOH . 
E 3 HOH A 41 741 187 HOH HOH . 
E 3 HOH A 42 742 7 HOH HOH . 
E 3 HOH A 43 743 193 HOH HOH . 
E 3 HOH A 44 744 135 HOH HOH . 
E 3 HOH A 45 745 239 HOH HOH . 
E 3 HOH A 46 746 233 HOH HOH . 
E 3 HOH A 47 747 89 HOH HOH . 
E 3 HOH A 48 748 48 HOH HOH . 
E 3 HOH A 49 749 234 HOH HOH . 
E 3 HOH A 50 750 240 HOH HOH . 
E 3 HOH A 51 751 238 HOH HOH . 
E 3 HOH A 52 752 189 HOH HOH . 
E 3 HOH A 53 753 223 HOH HOH . 
E 3 HOH A 54 754 163 HOH HOH . 
E 3 HOH A 55 755 164 HOH HOH . 
E 3 HOH A 56 756 215 HOH HOH . 
E 3 HOH A 57 757 224 HOH HOH . 
E 3 HOH A 58 758 138 HOH HOH . 
E 3 HOH A 59 759 225 HOH HOH . 
F 3 HOH B 1 701 12 HOH HOH . 
F 3 HOH B 2 702 149 HOH HOH . 
F 3 HOH B 3 703 199 HOH HOH . 
F 3 HOH B 4 704 177 HOH HOH . 
F 3 HOH B 5 705 143 HOH HOH . 
F 3 HOH B 6 706 61 HOH HOH . 
F 3 HOH B 7 707 209 HOH HOH . 
F 3 HOH B 8 708 227 HOH HOH . 
F 3 HOH B 9 709 195 HOH HOH . 
F 3 HOH B 10 710 70 HOH HOH . 
F 3 HOH B 11 711 236 HOH HOH . 
F 3 HOH B 12 712 85 HOH HOH . 
F 3 HOH B 13 713 221 HOH HOH . 
F 3 HOH B 14 714 29 HOH HOH . 
F 3 HOH B 15 715 47 HOH HOH . 
F 3 HOH B 16 716 112 HOH HOH . 
F 3 HOH B 17 717 35 HOH HOH . 
F 3 HOH B 18 718 203 HOH HOH . 
F 3 HOH B 19 719 120 HOH HOH . 
F 3 HOH B 20 720 229 HOH HOH . 
F 3 HOH B 21 721 41 HOH HOH . 
F 3 HOH B 22 722 23 HOH HOH . 
F 3 HOH B 23 723 205 HOH HOH . 
F 3 HOH B 24 724 9 HOH HOH . 
F 3 HOH B 25 725 192 HOH HOH . 
F 3 HOH B 26 726 174 HOH HOH . 
F 3 HOH B 27 727 43 HOH HOH . 
F 3 HOH B 28 728 181 HOH HOH . 
F 3 HOH B 29 729 198 HOH HOH . 
F 3 HOH B 30 730 173 HOH HOH . 
F 3 HOH B 31 731 165 HOH HOH . 
F 3 HOH B 32 732 71 HOH HOH . 
F 3 HOH B 33 733 145 HOH HOH . 
F 3 HOH B 34 734 18 HOH HOH . 
F 3 HOH B 35 735 241 HOH HOH . 
F 3 HOH B 36 736 155 HOH HOH . 
F 3 HOH B 37 737 178 HOH HOH . 
F 3 HOH B 38 738 183 HOH HOH . 
F 3 HOH B 39 739 162 HOH HOH . 
F 3 HOH B 40 740 228 HOH HOH . 
F 3 HOH B 41 741 214 HOH HOH . 
F 3 HOH B 42 742 117 HOH HOH . 
F 3 HOH B 43 743 237 HOH HOH . 
F 3 HOH B 44 744 206 HOH HOH . 
F 3 HOH B 45 745 185 HOH HOH . 
F 3 HOH B 46 746 220 HOH HOH . 
F 3 HOH B 47 747 222 HOH HOH . 
F 3 HOH B 48 748 103 HOH HOH . 
F 3 HOH B 49 749 59 HOH HOH . 
F 3 HOH B 50 750 182 HOH HOH . 
F 3 HOH B 51 751 169 HOH HOH . 
F 3 HOH B 52 752 60 HOH HOH . 
F 3 HOH B 53 753 184 HOH HOH . 
F 3 HOH B 54 754 167 HOH HOH . 
F 3 HOH B 55 755 119 HOH HOH . 
F 3 HOH B 56 756 188 HOH HOH . 
F 3 HOH B 57 757 110 HOH HOH . 
F 3 HOH B 58 758 197 HOH HOH . 
F 3 HOH B 59 759 202 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               24.739 
_atom_site.Cartn_y               28.389 
_atom_site.Cartn_z               -21.827 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        59.83 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           406 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#