data_6YA5 # _model_server_result.job_id KvdECIykLeKTAnfTwHfPzg _model_server_result.datetime_utc '2024-11-13 19:11:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ya5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 6YA5 # _exptl.entry_id 6YA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6YA5 _cell.length_a 74.069 _cell.length_b 74.069 _cell.length_c 127.715 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 43 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc2 A OE2 GLU 63 A GLU 80 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc3 A OD2 ASP 91 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 A OD1 ASP 91 A ASP 108 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc5 A OE2 GLU 102 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc6 A O ILE 103 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O5 LU2 . A LU2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O6 LU2 . A LU2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc9 C MG MG . A MG 202 1_555 D O5 LU2 . A LU2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc10 C MG MG . A MG 202 1_555 J O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc11 C MG MG . A MG 202 1_555 J O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc12 C MG MG . A MG 202 1_555 J O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 295 n n C1 C2 PGE sing 296 n n C1 H1 PGE sing 297 n n C1 H12 PGE sing 298 n n O1 HO1 PGE sing 299 n n C2 O2 PGE sing 300 n n C2 H2 PGE sing 301 n n C2 H22 PGE sing 302 n n O2 C3 PGE sing 303 n n C3 C4 PGE sing 304 n n C3 H3 PGE sing 305 n n C3 H32 PGE sing 306 n n C4 O3 PGE sing 307 n n C4 H4 PGE sing 308 n n C4 H42 PGE sing 309 n n O4 C6 PGE sing 310 n n O4 HO4 PGE sing 311 n n C6 C5 PGE sing 312 n n C6 H6 PGE sing 313 n n C6 H62 PGE sing 314 n n C5 O3 PGE sing 315 n n C5 H5 PGE sing 316 n n C5 H52 PGE sing 317 n n # _atom_sites.entry_id 6YA5 _atom_sites.fract_transf_matrix[1][1] 0.013501 _atom_sites.fract_transf_matrix[1][2] 0.007795 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 1 MN MN . C 3 MG A 1 202 2 MG MG . D 4 LU2 A 1 203 1 LU2 LU2 . E 5 SO4 A 1 204 1 SO4 SO4 . F 5 SO4 A 1 205 2 SO4 SO4 . G 6 DMS A 1 206 1 DMS DMS . H 7 PGE A 1 207 1 PGE PG4 . I 8 PEG A 1 208 1 PEG PEG . J 9 HOH A 1 301 51 HOH HOH . J 9 HOH A 2 302 36 HOH HOH . J 9 HOH A 3 303 53 HOH HOH . J 9 HOH A 4 304 43 HOH HOH . J 9 HOH A 5 305 33 HOH HOH . J 9 HOH A 6 306 72 HOH HOH . J 9 HOH A 7 307 44 HOH HOH . J 9 HOH A 8 308 9 HOH HOH . J 9 HOH A 9 309 6 HOH HOH . J 9 HOH A 10 310 52 HOH HOH . J 9 HOH A 11 311 69 HOH HOH . J 9 HOH A 12 312 18 HOH HOH . J 9 HOH A 13 313 13 HOH HOH . J 9 HOH A 14 314 42 HOH HOH . J 9 HOH A 15 315 1 HOH HOH . J 9 HOH A 16 316 7 HOH HOH . J 9 HOH A 17 317 24 HOH HOH . J 9 HOH A 18 318 56 HOH HOH . J 9 HOH A 19 319 27 HOH HOH . J 9 HOH A 20 320 20 HOH HOH . J 9 HOH A 21 321 31 HOH HOH . J 9 HOH A 22 322 23 HOH HOH . J 9 HOH A 23 323 78 HOH HOH . J 9 HOH A 24 324 19 HOH HOH . J 9 HOH A 25 325 2 HOH HOH . J 9 HOH A 26 326 66 HOH HOH . J 9 HOH A 27 327 22 HOH HOH . J 9 HOH A 28 328 3 HOH HOH . J 9 HOH A 29 329 48 HOH HOH . J 9 HOH A 30 330 65 HOH HOH . J 9 HOH A 31 331 14 HOH HOH . J 9 HOH A 32 332 30 HOH HOH . J 9 HOH A 33 333 16 HOH HOH . J 9 HOH A 34 334 80 HOH HOH . J 9 HOH A 35 335 10 HOH HOH . J 9 HOH A 36 336 4 HOH HOH . J 9 HOH A 37 337 40 HOH HOH . J 9 HOH A 38 338 57 HOH HOH . J 9 HOH A 39 339 77 HOH HOH . J 9 HOH A 40 340 49 HOH HOH . J 9 HOH A 41 341 21 HOH HOH . J 9 HOH A 42 342 37 HOH HOH . J 9 HOH A 43 343 41 HOH HOH . J 9 HOH A 44 344 8 HOH HOH . J 9 HOH A 45 345 39 HOH HOH . J 9 HOH A 46 346 35 HOH HOH . J 9 HOH A 47 347 58 HOH HOH . J 9 HOH A 48 348 64 HOH HOH . J 9 HOH A 49 349 63 HOH HOH . J 9 HOH A 50 350 46 HOH HOH . J 9 HOH A 51 351 28 HOH HOH . J 9 HOH A 52 352 54 HOH HOH . J 9 HOH A 53 353 47 HOH HOH . J 9 HOH A 54 354 55 HOH HOH . J 9 HOH A 55 355 61 HOH HOH . J 9 HOH A 56 356 17 HOH HOH . J 9 HOH A 57 357 59 HOH HOH . J 9 HOH A 58 358 68 HOH HOH . J 9 HOH A 59 359 50 HOH HOH . J 9 HOH A 60 360 75 HOH HOH . J 9 HOH A 61 361 71 HOH HOH . J 9 HOH A 62 362 12 HOH HOH . J 9 HOH A 63 363 5 HOH HOH . J 9 HOH A 64 364 38 HOH HOH . J 9 HOH A 65 365 29 HOH HOH . J 9 HOH A 66 366 26 HOH HOH . J 9 HOH A 67 367 62 HOH HOH . J 9 HOH A 68 368 70 HOH HOH . J 9 HOH A 69 369 15 HOH HOH . J 9 HOH A 70 370 76 HOH HOH . J 9 HOH A 71 371 79 HOH HOH . J 9 HOH A 72 372 32 HOH HOH . J 9 HOH A 73 373 25 HOH HOH . J 9 HOH A 74 374 67 HOH HOH . J 9 HOH A 75 375 74 HOH HOH . J 9 HOH A 76 376 34 HOH HOH . J 9 HOH A 77 377 45 HOH HOH . J 9 HOH A 78 378 73 HOH HOH . J 9 HOH A 79 379 60 HOH HOH . J 9 HOH A 80 380 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . H 7 23.419 1.688 6.85 1 58.44 ? C1 PGE 207 A 1 HETATM 2 O O1 PGE . . . H 7 22.09 1.132 6.903 1 56.16 ? O1 PGE 207 A 1 HETATM 3 C C2 PGE . . . H 7 24.286 1.325 5.631 1 61.32 ? C2 PGE 207 A 1 HETATM 4 O O2 PGE . . . H 7 24.196 2.361 4.612 1 60.3 ? O2 PGE 207 A 1 HETATM 5 C C3 PGE . . . H 7 24.76 2.057 3.316 1 51.21 ? C3 PGE 207 A 1 HETATM 6 C C4 PGE . . . H 7 24.009 2.737 2.141 1 43.49 ? C4 PGE 207 A 1 HETATM 7 O O4 PGE . A . H 7 21.636 -0.288 -0.082 0.5 39.2 ? O4 PGE 207 A 1 HETATM 8 O O4 PGE . B . H 7 20.321 -0.3 3.695 0.5 35.39 ? O4 PGE 207 A 1 HETATM 9 C C6 PGE . A . H 7 21.285 1.018 0.406 0.5 33.74 ? C6 PGE 207 A 1 HETATM 10 C C6 PGE . B . H 7 21.351 0.715 3.849 0.5 34.59 ? C6 PGE 207 A 1 HETATM 11 C C5 PGE . A . H 7 22.103 1.273 1.645 0.5 37.43 ? C5 PGE 207 A 1 HETATM 12 C C5 PGE . B . H 7 22.312 0.848 2.64 0.5 38.01 ? C5 PGE 207 A 1 HETATM 13 O O3 PGE . A . H 7 22.768 2.501 1.476 0.5 37.75 ? O3 PGE 207 A 1 HETATM 14 O O3 PGE . B . H 7 22.667 2.151 2.021 0.5 44.85 ? O3 PGE 207 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #