data_6YAA # _model_server_result.job_id 4FZgfc1dPCbnfvZWholZ2A _model_server_result.datetime_utc '2024-11-28 12:26:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yaa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 6YAA # _exptl.entry_id 6YAA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 439.514 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[2-[(2~{R})-2-[3-propyl-6-(trifluoromethyloxy)-1~{H}-indol-2-yl]piperidin-1-yl]ethyl]morpholine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YAA _cell.length_a 71.632 _cell.length_b 71.632 _cell.length_c 588.306 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YAA _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 876 A CYS 876 1_555 A SG CYS 888 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc1 A O LEU 711 A LEU 711 1_555 D K K . A K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc2 A O LYS 712 A LYS 712 1_555 D K K . A K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc3 A O ALA 714 A ALA 714 1_555 D K K . A K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc4 A OE1 GLU 732 A GLU 732 1_555 D K K . A K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? metalc ? metalc5 A OE2 GLU 732 A GLU 732 1_555 D K K . A K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? # _chem_comp.formula 'C23 H32 F3 N3 O2' _chem_comp.formula_weight 439.514 _chem_comp.id OHW _chem_comp.mon_nstd_flag . _chem_comp.name 4-[2-[(2~{R})-2-[3-propyl-6-(trifluoromethyloxy)-1~{H}-indol-2-yl]piperidin-1-yl]ethyl]morpholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CAD204520 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F2 C20 OHW sing 302 n n F1 C20 OHW sing 303 n n C20 O2 OHW sing 304 n n C20 F3 OHW sing 305 n n O2 C19 OHW sing 306 n n C21 C19 OHW doub 307 n y C21 C22 OHW sing 308 n y C19 C18 OHW sing 309 n y C22 C23 OHW doub 310 n y C18 C17 OHW doub 311 n y C23 C17 OHW sing 312 n y C23 C4 OHW sing 313 n y C17 N3 OHW sing 314 n y C2 C3 OHW sing 315 n n C2 C1 OHW sing 316 n n C4 C3 OHW sing 317 n n C4 C5 OHW doub 318 n y N3 C5 OHW sing 319 n y C5 C6 OHW sing 320 n n C15 O1 OHW sing 321 n n C15 C16 OHW sing 322 n n O1 C14 OHW sing 323 n n C14 C13 OHW sing 324 n n C7 C6 OHW sing 325 n n C7 C8 OHW sing 326 n n C16 N2 OHW sing 327 n n C6 N1 OHW sing 328 n n N2 C13 OHW sing 329 n n N2 C12 OHW sing 330 n n N1 C11 OHW sing 331 n n N1 C10 OHW sing 332 n n C8 C9 OHW sing 333 n n C11 C12 OHW sing 334 n n C9 C10 OHW sing 335 n n C3 H1 OHW sing 336 n n C3 H2 OHW sing 337 n n C2 H3 OHW sing 338 n n C2 H4 OHW sing 339 n n C1 H5 OHW sing 340 n n C1 H6 OHW sing 341 n n C1 H7 OHW sing 342 n n C6 H9 OHW sing 343 n n C7 H10 OHW sing 344 n n C7 H11 OHW sing 345 n n C16 H12 OHW sing 346 n n C16 H13 OHW sing 347 n n C18 H14 OHW sing 348 n n C15 H15 OHW sing 349 n n C15 H16 OHW sing 350 n n C14 H17 OHW sing 351 n n C14 H18 OHW sing 352 n n C10 H19 OHW sing 353 n n C10 H20 OHW sing 354 n n C9 H21 OHW sing 355 n n C9 H22 OHW sing 356 n n C8 H23 OHW sing 357 n n C8 H24 OHW sing 358 n n C13 H25 OHW sing 359 n n C13 H26 OHW sing 360 n n C12 H27 OHW sing 361 n n C12 H28 OHW sing 362 n n C11 H29 OHW sing 363 n n C11 H30 OHW sing 364 n n C21 H32 OHW sing 365 n n C22 H33 OHW sing 366 n n N3 H34 OHW sing 367 n n # _atom_sites.entry_id 6YAA _atom_sites.fract_transf_matrix[1][1] 0.01396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 128 A 1 1001 1001 128 128 . C 3 OHW A 1 1002 1101 OHW 520 . D 4 K A 1 1003 1201 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 OHW . . . C 3 -17.397 32.801 -60.378 1 130.33 ? C3 OHW 1002 A 1 HETATM 2 C C2 OHW . . . C 3 -16.495 34.002 -60.68 1 130.33 ? C2 OHW 1002 A 1 HETATM 3 C C1 OHW . . . C 3 -15.211 33.966 -59.888 1 130.33 ? C1 OHW 1002 A 1 HETATM 4 N N1 OHW . . . C 3 -17.141 29.11 -57.784 1 130.33 ? N1 OHW 1002 A 1 HETATM 5 C C6 OHW . . . C 3 -17.912 30.014 -58.672 1 130.33 ? C6 OHW 1002 A 1 HETATM 6 C C5 OHW . . . C 3 -17.094 30.301 -59.915 1 130.33 ? C5 OHW 1002 A 1 HETATM 7 C C4 OHW . . . C 3 -16.833 31.426 -60.648 1 130.33 ? C4 OHW 1002 A 1 HETATM 8 C C7 OHW . . . C 3 -19.275 29.394 -58.993 1 130.33 ? C7 OHW 1002 A 1 HETATM 9 O O1 OHW . . . C 3 -11.387 27.305 -59.549 1 130.33 ? O1 OHW 1002 A 1 HETATM 10 C C16 OHW . . . C 3 -13.59 26.808 -58.684 1 130.33 ? C16 OHW 1002 A 1 HETATM 11 C C17 OHW . . . C 3 -15.693 29.67 -61.565 1 130.33 ? C17 OHW 1002 A 1 HETATM 12 C C18 OHW . . . C 3 -14.855 28.961 -62.438 1 130.33 ? C18 OHW 1002 A 1 HETATM 13 C C15 OHW . . . C 3 -12.596 26.602 -59.796 1 130.33 ? C15 OHW 1002 A 1 HETATM 14 C C14 OHW . . . C 3 -11.663 28.692 -59.417 1 130.33 ? C14 OHW 1002 A 1 HETATM 15 C C19 OHW . . . C 3 -14.238 29.66 -63.461 1 130.33 ? C19 OHW 1002 A 1 HETATM 16 C C10 OHW . . . C 3 -17.824 28.609 -56.585 1 130.33 ? C10 OHW 1002 A 1 HETATM 17 C C9 OHW . . . C 3 -19.135 27.953 -56.941 1 130.33 ? C9 OHW 1002 A 1 HETATM 18 C C8 OHW . . . C 3 -19.996 28.921 -57.73 1 130.33 ? C8 OHW 1002 A 1 HETATM 19 C C13 OHW . . . C 3 -12.635 28.961 -58.297 1 130.33 ? C13 OHW 1002 A 1 HETATM 20 O O2 OHW . . . C 3 -13.387 28.959 -64.332 1 130.33 ? O2 OHW 1002 A 1 HETATM 21 C C12 OHW . . . C 3 -14.802 28.43 -57.372 1 130.33 ? C12 OHW 1002 A 1 HETATM 22 C C11 OHW . . . C 3 -15.795 29.602 -57.45 1 130.33 ? C11 OHW 1002 A 1 HETATM 23 N N2 OHW . . . C 3 -13.89 28.231 -58.506 1 130.33 ? N2 OHW 1002 A 1 HETATM 24 C C20 OHW . . . C 3 -12.385 29.61 -64.942 1 130.33 ? C20 OHW 1002 A 1 HETATM 25 C C21 OHW . . . C 3 -14.483 31.037 -63.622 1 130.33 ? C21 OHW 1002 A 1 HETATM 26 C C22 OHW . . . C 3 -15.315 31.725 -62.77 1 130.33 ? C22 OHW 1002 A 1 HETATM 27 C C23 OHW . . . C 3 -15.939 31.05 -61.709 1 130.33 ? C23 OHW 1002 A 1 HETATM 28 F F1 OHW . . . C 3 -11.446 28.791 -65.378 1 130.33 ? F1 OHW 1002 A 1 HETATM 29 F F2 OHW . . . C 3 -12.821 30.271 -65.992 1 130.33 ? F2 OHW 1002 A 1 HETATM 30 F F3 OHW . . . C 3 -11.772 30.476 -64.166 1 130.33 ? F3 OHW 1002 A 1 HETATM 31 N N3 OHW . . . C 3 -16.406 29.245 -60.471 1 130.33 ? N3 OHW 1002 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #