data_6YAP # _model_server_result.job_id JmIs0MVHECItZhYBNXfobA _model_server_result.datetime_utc '2024-11-13 15:45:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6YAP # _exptl.entry_id 6YAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YAP _cell.length_a 79.67 _cell.length_b 79.67 _cell.length_c 203.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 I N N ? 2 J N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND1 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 100 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 100 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C8M _struct_conn.ptnr2_label_comp_id FAD _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FAD _struct_conn.ptnr2_auth_seq_id 603 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.407 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 6YAP _atom_sites.fract_transf_matrix[1][1] 0.012552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 601 601 EDO EDO . C 2 EDO A 1 602 701 EDO EDO . D 3 FAD A 1 603 1 FAD FAD . E 4 OHZ A 1 604 1 OHZ IN3 . F 5 DMS A 1 605 1 DMS DMS . G 5 DMS A 1 606 2 DMS DMS . H 5 DMS A 1 607 3 DMS DMS . I 2 EDO A 1 608 1 EDO EDO . J 2 EDO A 1 609 2 EDO EDO . K 6 HOH A 1 701 3 HOH HOH . K 6 HOH A 2 702 16 HOH HOH . K 6 HOH A 3 703 121 HOH HOH . K 6 HOH A 4 704 118 HOH HOH . K 6 HOH A 5 705 18 HOH HOH . K 6 HOH A 6 706 25 HOH HOH . K 6 HOH A 7 707 119 HOH HOH . K 6 HOH A 8 708 26 HOH HOH . K 6 HOH A 9 709 32 HOH HOH . K 6 HOH A 10 710 40 HOH HOH . K 6 HOH A 11 711 173 HOH HOH . K 6 HOH A 12 712 31 HOH HOH . K 6 HOH A 13 713 7 HOH HOH . K 6 HOH A 14 714 53 HOH HOH . K 6 HOH A 15 715 19 HOH HOH . K 6 HOH A 16 716 131 HOH HOH . K 6 HOH A 17 717 155 HOH HOH . K 6 HOH A 18 718 30 HOH HOH . K 6 HOH A 19 719 4 HOH HOH . K 6 HOH A 20 720 92 HOH HOH . K 6 HOH A 21 721 23 HOH HOH . K 6 HOH A 22 722 111 HOH HOH . K 6 HOH A 23 723 2 HOH HOH . K 6 HOH A 24 724 148 HOH HOH . K 6 HOH A 25 725 50 HOH HOH . K 6 HOH A 26 726 90 HOH HOH . K 6 HOH A 27 727 48 HOH HOH . K 6 HOH A 28 728 128 HOH HOH . K 6 HOH A 29 729 9 HOH HOH . K 6 HOH A 30 730 83 HOH HOH . K 6 HOH A 31 731 114 HOH HOH . K 6 HOH A 32 732 64 HOH HOH . K 6 HOH A 33 733 27 HOH HOH . K 6 HOH A 34 734 132 HOH HOH . K 6 HOH A 35 735 45 HOH HOH . K 6 HOH A 36 736 75 HOH HOH . K 6 HOH A 37 737 135 HOH HOH . K 6 HOH A 38 738 47 HOH HOH . K 6 HOH A 39 739 11 HOH HOH . K 6 HOH A 40 740 188 HOH HOH . K 6 HOH A 41 741 126 HOH HOH . K 6 HOH A 42 742 52 HOH HOH . K 6 HOH A 43 743 158 HOH HOH . K 6 HOH A 44 744 21 HOH HOH . K 6 HOH A 45 745 80 HOH HOH . K 6 HOH A 46 746 107 HOH HOH . K 6 HOH A 47 747 79 HOH HOH . K 6 HOH A 48 748 138 HOH HOH . K 6 HOH A 49 749 55 HOH HOH . K 6 HOH A 50 750 70 HOH HOH . K 6 HOH A 51 751 172 HOH HOH . K 6 HOH A 52 752 68 HOH HOH . K 6 HOH A 53 753 147 HOH HOH . K 6 HOH A 54 754 46 HOH HOH . K 6 HOH A 55 755 181 HOH HOH . K 6 HOH A 56 756 95 HOH HOH . K 6 HOH A 57 757 71 HOH HOH . K 6 HOH A 58 758 85 HOH HOH . K 6 HOH A 59 759 38 HOH HOH . K 6 HOH A 60 760 156 HOH HOH . K 6 HOH A 61 761 60 HOH HOH . K 6 HOH A 62 762 105 HOH HOH . K 6 HOH A 63 763 13 HOH HOH . K 6 HOH A 64 764 20 HOH HOH . K 6 HOH A 65 765 17 HOH HOH . K 6 HOH A 66 766 73 HOH HOH . K 6 HOH A 67 767 97 HOH HOH . K 6 HOH A 68 768 129 HOH HOH . K 6 HOH A 69 769 104 HOH HOH . K 6 HOH A 70 770 179 HOH HOH . K 6 HOH A 71 771 108 HOH HOH . K 6 HOH A 72 772 76 HOH HOH . K 6 HOH A 73 773 140 HOH HOH . K 6 HOH A 74 774 82 HOH HOH . K 6 HOH A 75 775 6 HOH HOH . K 6 HOH A 76 776 57 HOH HOH . K 6 HOH A 77 777 69 HOH HOH . K 6 HOH A 78 778 98 HOH HOH . K 6 HOH A 79 779 44 HOH HOH . K 6 HOH A 80 780 196 HOH HOH . K 6 HOH A 81 781 58 HOH HOH . K 6 HOH A 82 782 56 HOH HOH . K 6 HOH A 83 783 54 HOH HOH . K 6 HOH A 84 784 94 HOH HOH . K 6 HOH A 85 785 189 HOH HOH . K 6 HOH A 86 786 110 HOH HOH . K 6 HOH A 87 787 28 HOH HOH . K 6 HOH A 88 788 122 HOH HOH . K 6 HOH A 89 789 99 HOH HOH . K 6 HOH A 90 790 125 HOH HOH . K 6 HOH A 91 791 193 HOH HOH . K 6 HOH A 92 792 59 HOH HOH . K 6 HOH A 93 793 43 HOH HOH . K 6 HOH A 94 794 151 HOH HOH . K 6 HOH A 95 795 51 HOH HOH . K 6 HOH A 96 796 81 HOH HOH . K 6 HOH A 97 797 168 HOH HOH . K 6 HOH A 98 798 65 HOH HOH . K 6 HOH A 99 799 14 HOH HOH . K 6 HOH A 100 800 86 HOH HOH . K 6 HOH A 101 801 35 HOH HOH . K 6 HOH A 102 802 37 HOH HOH . K 6 HOH A 103 803 78 HOH HOH . K 6 HOH A 104 804 157 HOH HOH . K 6 HOH A 105 805 63 HOH HOH . K 6 HOH A 106 806 74 HOH HOH . K 6 HOH A 107 807 36 HOH HOH . K 6 HOH A 108 808 150 HOH HOH . K 6 HOH A 109 809 49 HOH HOH . K 6 HOH A 110 810 34 HOH HOH . K 6 HOH A 111 811 103 HOH HOH . K 6 HOH A 112 812 77 HOH HOH . K 6 HOH A 113 813 62 HOH HOH . K 6 HOH A 114 814 123 HOH HOH . K 6 HOH A 115 815 12 HOH HOH . K 6 HOH A 116 816 115 HOH HOH . K 6 HOH A 117 817 33 HOH HOH . K 6 HOH A 118 818 66 HOH HOH . K 6 HOH A 119 819 102 HOH HOH . K 6 HOH A 120 820 8 HOH HOH . K 6 HOH A 121 821 1 HOH HOH . K 6 HOH A 122 822 160 HOH HOH . K 6 HOH A 123 823 120 HOH HOH . K 6 HOH A 124 824 24 HOH HOH . K 6 HOH A 125 825 10 HOH HOH . K 6 HOH A 126 826 101 HOH HOH . K 6 HOH A 127 827 163 HOH HOH . K 6 HOH A 128 828 93 HOH HOH . K 6 HOH A 129 829 96 HOH HOH . K 6 HOH A 130 830 143 HOH HOH . K 6 HOH A 131 831 67 HOH HOH . K 6 HOH A 132 832 215 HOH HOH . K 6 HOH A 133 833 146 HOH HOH . K 6 HOH A 134 834 29 HOH HOH . K 6 HOH A 135 835 41 HOH HOH . K 6 HOH A 136 836 72 HOH HOH . K 6 HOH A 137 837 162 HOH HOH . K 6 HOH A 138 838 42 HOH HOH . K 6 HOH A 139 839 39 HOH HOH . K 6 HOH A 140 840 109 HOH HOH . K 6 HOH A 141 841 89 HOH HOH . K 6 HOH A 142 842 22 HOH HOH . K 6 HOH A 143 843 117 HOH HOH . K 6 HOH A 144 844 5 HOH HOH . K 6 HOH A 145 845 15 HOH HOH . K 6 HOH A 146 846 154 HOH HOH . K 6 HOH A 147 847 182 HOH HOH . K 6 HOH A 148 848 61 HOH HOH . K 6 HOH A 149 849 161 HOH HOH . K 6 HOH A 150 850 91 HOH HOH . K 6 HOH A 151 851 106 HOH HOH . K 6 HOH A 152 852 84 HOH HOH . K 6 HOH A 153 853 197 HOH HOH . K 6 HOH A 154 854 165 HOH HOH . K 6 HOH A 155 855 88 HOH HOH . K 6 HOH A 156 856 149 HOH HOH . K 6 HOH A 157 857 178 HOH HOH . K 6 HOH A 158 858 177 HOH HOH . K 6 HOH A 159 859 112 HOH HOH . K 6 HOH A 160 860 145 HOH HOH . K 6 HOH A 161 861 134 HOH HOH . K 6 HOH A 162 862 174 HOH HOH . K 6 HOH A 163 863 194 HOH HOH . K 6 HOH A 164 864 100 HOH HOH . K 6 HOH A 165 865 159 HOH HOH . K 6 HOH A 166 866 207 HOH HOH . K 6 HOH A 167 867 116 HOH HOH . K 6 HOH A 168 868 220 HOH HOH . K 6 HOH A 169 869 208 HOH HOH . K 6 HOH A 170 870 137 HOH HOH . K 6 HOH A 171 871 201 HOH HOH . K 6 HOH A 172 872 210 HOH HOH . K 6 HOH A 173 873 212 HOH HOH . K 6 HOH A 174 874 186 HOH HOH . K 6 HOH A 175 875 183 HOH HOH . K 6 HOH A 176 876 213 HOH HOH . K 6 HOH A 177 877 141 HOH HOH . K 6 HOH A 178 878 217 HOH HOH . K 6 HOH A 179 879 195 HOH HOH . K 6 HOH A 180 880 209 HOH HOH . K 6 HOH A 181 881 167 HOH HOH . K 6 HOH A 182 882 216 HOH HOH . K 6 HOH A 183 883 191 HOH HOH . K 6 HOH A 184 884 219 HOH HOH . K 6 HOH A 185 885 192 HOH HOH . K 6 HOH A 186 886 202 HOH HOH . K 6 HOH A 187 887 124 HOH HOH . K 6 HOH A 188 888 200 HOH HOH . K 6 HOH A 189 889 198 HOH HOH . K 6 HOH A 190 890 214 HOH HOH . K 6 HOH A 191 891 199 HOH HOH . K 6 HOH A 192 892 205 HOH HOH . K 6 HOH A 193 893 203 HOH HOH . K 6 HOH A 194 894 218 HOH HOH . K 6 HOH A 195 895 175 HOH HOH . K 6 HOH A 196 896 204 HOH HOH . K 6 HOH A 197 897 170 HOH HOH . K 6 HOH A 198 898 184 HOH HOH . K 6 HOH A 199 899 87 HOH HOH . K 6 HOH A 200 900 221 HOH HOH . K 6 HOH A 201 901 211 HOH HOH . K 6 HOH A 202 902 187 HOH HOH . K 6 HOH A 203 903 190 HOH HOH . K 6 HOH A 204 904 113 HOH HOH . K 6 HOH A 205 905 206 HOH HOH . K 6 HOH A 206 906 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 9.824 3.923 -7.486 1 69.37 ? C1 EDO 601 A 1 HETATM 2 O O1 EDO . . . B 2 8.902 4.17 -6.412 1 68.76 ? O1 EDO 601 A 1 HETATM 3 C C2 EDO . . . B 2 9.773 5.048 -8.572 1 69.27 ? C2 EDO 601 A 1 HETATM 4 O O2 EDO . . . B 2 8.805 6.055 -8.241 1 68.51 ? O2 EDO 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #