data_6YAP
#
_model_server_result.job_id            XuHk2kE3Y4JEZcMtVRR5sw 
_model_server_result.datetime_utc      '2024-11-25 03:53:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yap 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    6YAP 
#
_exptl.entry_id    6YAP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YAP 
_cell.length_a            79.67 
_cell.length_b            79.67 
_cell.length_c            203.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YAP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 I N N 
? 2 J N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            ND1 
_struct_conn.ptnr1_label_comp_id            HIS 
_struct_conn.ptnr1_label_seq_id             100 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             HIS 
_struct_conn.ptnr1_auth_seq_id              100 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            C8M 
_struct_conn.ptnr2_label_comp_id            FAD 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             FAD 
_struct_conn.ptnr2_auth_seq_id              603 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.407 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     6YAP 
_atom_sites.fract_transf_matrix[1][1]    0.012552 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012552 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004909 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 601 601 EDO EDO . 
C 2 EDO A 1 602 701 EDO EDO . 
D 3 FAD A 1 603 1 FAD FAD . 
E 4 OHZ A 1 604 1 OHZ IN3 . 
F 5 DMS A 1 605 1 DMS DMS . 
G 5 DMS A 1 606 2 DMS DMS . 
H 5 DMS A 1 607 3 DMS DMS . 
I 2 EDO A 1 608 1 EDO EDO . 
J 2 EDO A 1 609 2 EDO EDO . 
K 6 HOH A 1 701 3 HOH HOH . 
K 6 HOH A 2 702 16 HOH HOH . 
K 6 HOH A 3 703 121 HOH HOH . 
K 6 HOH A 4 704 118 HOH HOH . 
K 6 HOH A 5 705 18 HOH HOH . 
K 6 HOH A 6 706 25 HOH HOH . 
K 6 HOH A 7 707 119 HOH HOH . 
K 6 HOH A 8 708 26 HOH HOH . 
K 6 HOH A 9 709 32 HOH HOH . 
K 6 HOH A 10 710 40 HOH HOH . 
K 6 HOH A 11 711 173 HOH HOH . 
K 6 HOH A 12 712 31 HOH HOH . 
K 6 HOH A 13 713 7 HOH HOH . 
K 6 HOH A 14 714 53 HOH HOH . 
K 6 HOH A 15 715 19 HOH HOH . 
K 6 HOH A 16 716 131 HOH HOH . 
K 6 HOH A 17 717 155 HOH HOH . 
K 6 HOH A 18 718 30 HOH HOH . 
K 6 HOH A 19 719 4 HOH HOH . 
K 6 HOH A 20 720 92 HOH HOH . 
K 6 HOH A 21 721 23 HOH HOH . 
K 6 HOH A 22 722 111 HOH HOH . 
K 6 HOH A 23 723 2 HOH HOH . 
K 6 HOH A 24 724 148 HOH HOH . 
K 6 HOH A 25 725 50 HOH HOH . 
K 6 HOH A 26 726 90 HOH HOH . 
K 6 HOH A 27 727 48 HOH HOH . 
K 6 HOH A 28 728 128 HOH HOH . 
K 6 HOH A 29 729 9 HOH HOH . 
K 6 HOH A 30 730 83 HOH HOH . 
K 6 HOH A 31 731 114 HOH HOH . 
K 6 HOH A 32 732 64 HOH HOH . 
K 6 HOH A 33 733 27 HOH HOH . 
K 6 HOH A 34 734 132 HOH HOH . 
K 6 HOH A 35 735 45 HOH HOH . 
K 6 HOH A 36 736 75 HOH HOH . 
K 6 HOH A 37 737 135 HOH HOH . 
K 6 HOH A 38 738 47 HOH HOH . 
K 6 HOH A 39 739 11 HOH HOH . 
K 6 HOH A 40 740 188 HOH HOH . 
K 6 HOH A 41 741 126 HOH HOH . 
K 6 HOH A 42 742 52 HOH HOH . 
K 6 HOH A 43 743 158 HOH HOH . 
K 6 HOH A 44 744 21 HOH HOH . 
K 6 HOH A 45 745 80 HOH HOH . 
K 6 HOH A 46 746 107 HOH HOH . 
K 6 HOH A 47 747 79 HOH HOH . 
K 6 HOH A 48 748 138 HOH HOH . 
K 6 HOH A 49 749 55 HOH HOH . 
K 6 HOH A 50 750 70 HOH HOH . 
K 6 HOH A 51 751 172 HOH HOH . 
K 6 HOH A 52 752 68 HOH HOH . 
K 6 HOH A 53 753 147 HOH HOH . 
K 6 HOH A 54 754 46 HOH HOH . 
K 6 HOH A 55 755 181 HOH HOH . 
K 6 HOH A 56 756 95 HOH HOH . 
K 6 HOH A 57 757 71 HOH HOH . 
K 6 HOH A 58 758 85 HOH HOH . 
K 6 HOH A 59 759 38 HOH HOH . 
K 6 HOH A 60 760 156 HOH HOH . 
K 6 HOH A 61 761 60 HOH HOH . 
K 6 HOH A 62 762 105 HOH HOH . 
K 6 HOH A 63 763 13 HOH HOH . 
K 6 HOH A 64 764 20 HOH HOH . 
K 6 HOH A 65 765 17 HOH HOH . 
K 6 HOH A 66 766 73 HOH HOH . 
K 6 HOH A 67 767 97 HOH HOH . 
K 6 HOH A 68 768 129 HOH HOH . 
K 6 HOH A 69 769 104 HOH HOH . 
K 6 HOH A 70 770 179 HOH HOH . 
K 6 HOH A 71 771 108 HOH HOH . 
K 6 HOH A 72 772 76 HOH HOH . 
K 6 HOH A 73 773 140 HOH HOH . 
K 6 HOH A 74 774 82 HOH HOH . 
K 6 HOH A 75 775 6 HOH HOH . 
K 6 HOH A 76 776 57 HOH HOH . 
K 6 HOH A 77 777 69 HOH HOH . 
K 6 HOH A 78 778 98 HOH HOH . 
K 6 HOH A 79 779 44 HOH HOH . 
K 6 HOH A 80 780 196 HOH HOH . 
K 6 HOH A 81 781 58 HOH HOH . 
K 6 HOH A 82 782 56 HOH HOH . 
K 6 HOH A 83 783 54 HOH HOH . 
K 6 HOH A 84 784 94 HOH HOH . 
K 6 HOH A 85 785 189 HOH HOH . 
K 6 HOH A 86 786 110 HOH HOH . 
K 6 HOH A 87 787 28 HOH HOH . 
K 6 HOH A 88 788 122 HOH HOH . 
K 6 HOH A 89 789 99 HOH HOH . 
K 6 HOH A 90 790 125 HOH HOH . 
K 6 HOH A 91 791 193 HOH HOH . 
K 6 HOH A 92 792 59 HOH HOH . 
K 6 HOH A 93 793 43 HOH HOH . 
K 6 HOH A 94 794 151 HOH HOH . 
K 6 HOH A 95 795 51 HOH HOH . 
K 6 HOH A 96 796 81 HOH HOH . 
K 6 HOH A 97 797 168 HOH HOH . 
K 6 HOH A 98 798 65 HOH HOH . 
K 6 HOH A 99 799 14 HOH HOH . 
K 6 HOH A 100 800 86 HOH HOH . 
K 6 HOH A 101 801 35 HOH HOH . 
K 6 HOH A 102 802 37 HOH HOH . 
K 6 HOH A 103 803 78 HOH HOH . 
K 6 HOH A 104 804 157 HOH HOH . 
K 6 HOH A 105 805 63 HOH HOH . 
K 6 HOH A 106 806 74 HOH HOH . 
K 6 HOH A 107 807 36 HOH HOH . 
K 6 HOH A 108 808 150 HOH HOH . 
K 6 HOH A 109 809 49 HOH HOH . 
K 6 HOH A 110 810 34 HOH HOH . 
K 6 HOH A 111 811 103 HOH HOH . 
K 6 HOH A 112 812 77 HOH HOH . 
K 6 HOH A 113 813 62 HOH HOH . 
K 6 HOH A 114 814 123 HOH HOH . 
K 6 HOH A 115 815 12 HOH HOH . 
K 6 HOH A 116 816 115 HOH HOH . 
K 6 HOH A 117 817 33 HOH HOH . 
K 6 HOH A 118 818 66 HOH HOH . 
K 6 HOH A 119 819 102 HOH HOH . 
K 6 HOH A 120 820 8 HOH HOH . 
K 6 HOH A 121 821 1 HOH HOH . 
K 6 HOH A 122 822 160 HOH HOH . 
K 6 HOH A 123 823 120 HOH HOH . 
K 6 HOH A 124 824 24 HOH HOH . 
K 6 HOH A 125 825 10 HOH HOH . 
K 6 HOH A 126 826 101 HOH HOH . 
K 6 HOH A 127 827 163 HOH HOH . 
K 6 HOH A 128 828 93 HOH HOH . 
K 6 HOH A 129 829 96 HOH HOH . 
K 6 HOH A 130 830 143 HOH HOH . 
K 6 HOH A 131 831 67 HOH HOH . 
K 6 HOH A 132 832 215 HOH HOH . 
K 6 HOH A 133 833 146 HOH HOH . 
K 6 HOH A 134 834 29 HOH HOH . 
K 6 HOH A 135 835 41 HOH HOH . 
K 6 HOH A 136 836 72 HOH HOH . 
K 6 HOH A 137 837 162 HOH HOH . 
K 6 HOH A 138 838 42 HOH HOH . 
K 6 HOH A 139 839 39 HOH HOH . 
K 6 HOH A 140 840 109 HOH HOH . 
K 6 HOH A 141 841 89 HOH HOH . 
K 6 HOH A 142 842 22 HOH HOH . 
K 6 HOH A 143 843 117 HOH HOH . 
K 6 HOH A 144 844 5 HOH HOH . 
K 6 HOH A 145 845 15 HOH HOH . 
K 6 HOH A 146 846 154 HOH HOH . 
K 6 HOH A 147 847 182 HOH HOH . 
K 6 HOH A 148 848 61 HOH HOH . 
K 6 HOH A 149 849 161 HOH HOH . 
K 6 HOH A 150 850 91 HOH HOH . 
K 6 HOH A 151 851 106 HOH HOH . 
K 6 HOH A 152 852 84 HOH HOH . 
K 6 HOH A 153 853 197 HOH HOH . 
K 6 HOH A 154 854 165 HOH HOH . 
K 6 HOH A 155 855 88 HOH HOH . 
K 6 HOH A 156 856 149 HOH HOH . 
K 6 HOH A 157 857 178 HOH HOH . 
K 6 HOH A 158 858 177 HOH HOH . 
K 6 HOH A 159 859 112 HOH HOH . 
K 6 HOH A 160 860 145 HOH HOH . 
K 6 HOH A 161 861 134 HOH HOH . 
K 6 HOH A 162 862 174 HOH HOH . 
K 6 HOH A 163 863 194 HOH HOH . 
K 6 HOH A 164 864 100 HOH HOH . 
K 6 HOH A 165 865 159 HOH HOH . 
K 6 HOH A 166 866 207 HOH HOH . 
K 6 HOH A 167 867 116 HOH HOH . 
K 6 HOH A 168 868 220 HOH HOH . 
K 6 HOH A 169 869 208 HOH HOH . 
K 6 HOH A 170 870 137 HOH HOH . 
K 6 HOH A 171 871 201 HOH HOH . 
K 6 HOH A 172 872 210 HOH HOH . 
K 6 HOH A 173 873 212 HOH HOH . 
K 6 HOH A 174 874 186 HOH HOH . 
K 6 HOH A 175 875 183 HOH HOH . 
K 6 HOH A 176 876 213 HOH HOH . 
K 6 HOH A 177 877 141 HOH HOH . 
K 6 HOH A 178 878 217 HOH HOH . 
K 6 HOH A 179 879 195 HOH HOH . 
K 6 HOH A 180 880 209 HOH HOH . 
K 6 HOH A 181 881 167 HOH HOH . 
K 6 HOH A 182 882 216 HOH HOH . 
K 6 HOH A 183 883 191 HOH HOH . 
K 6 HOH A 184 884 219 HOH HOH . 
K 6 HOH A 185 885 192 HOH HOH . 
K 6 HOH A 186 886 202 HOH HOH . 
K 6 HOH A 187 887 124 HOH HOH . 
K 6 HOH A 188 888 200 HOH HOH . 
K 6 HOH A 189 889 198 HOH HOH . 
K 6 HOH A 190 890 214 HOH HOH . 
K 6 HOH A 191 891 199 HOH HOH . 
K 6 HOH A 192 892 205 HOH HOH . 
K 6 HOH A 193 893 203 HOH HOH . 
K 6 HOH A 194 894 218 HOH HOH . 
K 6 HOH A 195 895 175 HOH HOH . 
K 6 HOH A 196 896 204 HOH HOH . 
K 6 HOH A 197 897 170 HOH HOH . 
K 6 HOH A 198 898 184 HOH HOH . 
K 6 HOH A 199 899 87 HOH HOH . 
K 6 HOH A 200 900 221 HOH HOH . 
K 6 HOH A 201 901 211 HOH HOH . 
K 6 HOH A 202 902 187 HOH HOH . 
K 6 HOH A 203 903 190 HOH HOH . 
K 6 HOH A 204 904 113 HOH HOH . 
K 6 HOH A 205 905 206 HOH HOH . 
K 6 HOH A 206 906 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 29.339 19.129 31.242 1 83.01 ? C1 EDO 602 A 1 
HETATM 2 O O1 EDO . . . C 2 28.045 19.733 31.256 1 82.46 ? O1 EDO 602 A 1 
HETATM 3 C C2 EDO . . . C 2 29.887 19.07 29.793 1 84.13 ? C2 EDO 602 A 1 
HETATM 4 O O2 EDO . . . C 2 31.046 18.248 29.733 1 84.54 ? O2 EDO 602 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#