data_6YAT
#
_model_server_result.job_id            F_LBFKRN8JJc7TJravlqcg 
_model_server_result.datetime_utc      '2024-10-19 12:42:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yat 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":401}' 
#
_entry.id    6YAT 
#
_exptl.entry_id    6YAT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.77 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[5-(3-chlorophenyl)-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl]morpholine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YAT 
_cell.length_a            111.68 
_cell.length_b            111.68 
_cell.length_c            171.486 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YAT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 177 A ASP 176 1_555 A N TPO 178 A TPO 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C TPO 178 A TPO 177 1_555 A N MET 179 A MET 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale3 A C ASN 183 A ASN 182 1_555 A N TPO 184 A TPO 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale4 A C TPO 184 A TPO 183 1_555 A N VAL 185 A VAL 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale5 B C ASP 177 B ASP 176 1_555 B N TPO 178 B TPO 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale6 B C TPO 178 B TPO 177 1_555 B N MET 179 B MET 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale7 B C ASN 183 B ASN 182 1_555 B N TPO 184 B TPO 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale8 B C TPO 184 B TPO 183 1_555 B N VAL 185 B VAL 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C16 H15 Cl N4 O' 
_chem_comp.formula_weight    314.77 
_chem_comp.id                OJ5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[5-(3-chlorophenyl)-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl]morpholine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL C OJ5 sing 284 n n 
C C15 OJ5 doub 285 n y 
C C1 OJ5 sing 286 n y 
C15 C4 OJ5 sing 287 n y 
C6 N OJ5 sing 288 n y 
C6 C5 OJ5 doub 289 n y 
C1 C2 OJ5 doub 290 n y 
N C7 OJ5 sing 291 n y 
C4 C5 OJ5 sing 292 n n 
C4 C3 OJ5 doub 293 n y 
C5 C14 OJ5 sing 294 n y 
C7 C14 OJ5 doub 295 n y 
C7 N1 OJ5 sing 296 n y 
C2 C3 OJ5 sing 297 n y 
C14 C9 OJ5 sing 298 n y 
C13 C12 OJ5 sing 299 n n 
C13 N3 OJ5 sing 300 n n 
N1 C8 OJ5 doub 301 n y 
C12 O OJ5 sing 302 n n 
C9 N3 OJ5 sing 303 n n 
C9 N2 OJ5 doub 304 n y 
C8 N2 OJ5 sing 305 n y 
N3 C10 OJ5 sing 306 n n 
O C11 OJ5 sing 307 n n 
C10 C11 OJ5 sing 308 n n 
C2 H1 OJ5 sing 309 n n 
C6 H2 OJ5 sing 310 n n 
C15 H3 OJ5 sing 311 n n 
C3 H4 OJ5 sing 312 n n 
C1 H5 OJ5 sing 313 n n 
N H6 OJ5 sing 314 n n 
C8 H7 OJ5 sing 315 n n 
C13 H8 OJ5 sing 316 n n 
C13 H9 OJ5 sing 317 n n 
C12 H10 OJ5 sing 318 n n 
C12 H11 OJ5 sing 319 n n 
C11 H12 OJ5 sing 320 n n 
C11 H13 OJ5 sing 321 n n 
C10 H14 OJ5 sing 322 n n 
C10 H15 OJ5 sing 323 n n 
#
_atom_sites.entry_id                     6YAT 
_atom_sites.fract_transf_matrix[1][1]    0.008954 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008954 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005831 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3FX A 1 401 1 3FX 3FX . 
D 3 GOL A 1 402 5 GOL GOL . 
E 3 GOL A 1 403 6 GOL GOL . 
F 3 GOL A 1 404 7 GOL GOL . 
G 3 GOL A 1 405 8 GOL GOL . 
H 3 GOL A 1 406 9 GOL GOL . 
I 3 GOL A 1 407 10 GOL GOL . 
J 3 GOL A 1 408 11 GOL GOL . 
K 4 OJ5 A 1 409 1 OJ5 YYY . 
L 4 OJ5 B 1 401 2 OJ5 YYY . 
M 5 HOH A 1 501 14 HOH HOH . 
M 5 HOH A 2 502 29 HOH HOH . 
M 5 HOH A 3 503 34 HOH HOH . 
M 5 HOH A 4 504 45 HOH HOH . 
M 5 HOH A 5 505 10 HOH HOH . 
M 5 HOH A 6 506 6 HOH HOH . 
M 5 HOH A 7 507 33 HOH HOH . 
M 5 HOH A 8 508 39 HOH HOH . 
M 5 HOH A 9 509 35 HOH HOH . 
M 5 HOH A 10 510 43 HOH HOH . 
M 5 HOH A 11 511 32 HOH HOH . 
M 5 HOH A 12 512 8 HOH HOH . 
M 5 HOH A 13 513 16 HOH HOH . 
M 5 HOH A 14 514 47 HOH HOH . 
M 5 HOH A 15 515 50 HOH HOH . 
M 5 HOH A 16 516 44 HOH HOH . 
M 5 HOH A 17 517 26 HOH HOH . 
M 5 HOH A 18 518 12 HOH HOH . 
M 5 HOH A 19 519 20 HOH HOH . 
M 5 HOH A 20 520 31 HOH HOH . 
M 5 HOH A 21 521 51 HOH HOH . 
M 5 HOH A 22 522 4 HOH HOH . 
M 5 HOH A 23 523 48 HOH HOH . 
M 5 HOH A 24 524 25 HOH HOH . 
M 5 HOH A 25 525 40 HOH HOH . 
M 5 HOH A 26 526 42 HOH HOH . 
M 5 HOH A 27 527 18 HOH HOH . 
M 5 HOH A 28 528 15 HOH HOH . 
M 5 HOH A 29 529 9 HOH HOH . 
M 5 HOH A 30 530 17 HOH HOH . 
M 5 HOH A 31 531 2 HOH HOH . 
M 5 HOH A 32 532 30 HOH HOH . 
M 5 HOH A 33 533 37 HOH HOH . 
M 5 HOH A 34 534 38 HOH HOH . 
M 5 HOH A 35 535 3 HOH HOH . 
M 5 HOH A 36 536 49 HOH HOH . 
N 5 HOH B 1 501 53 HOH HOH . 
N 5 HOH B 2 502 21 HOH HOH . 
N 5 HOH B 3 503 27 HOH HOH . 
N 5 HOH B 4 504 7 HOH HOH . 
N 5 HOH B 5 505 5 HOH HOH . 
N 5 HOH B 6 506 24 HOH HOH . 
N 5 HOH B 7 507 52 HOH HOH . 
N 5 HOH B 8 508 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 OJ5 . . . L 4 2.579 36.47 32.307 1 129.98 ? N1 OJ5 401 B 1 
HETATM 2 C C2 OJ5 . . . L 4 8.207 33.188 29.912 1 111.9 ? C2 OJ5 401 B 1 
HETATM 3 N N3 OJ5 . . . L 4 3.981 33.136 30.193 1 124.99 ? N3 OJ5 401 B 1 
HETATM 4 C C4 OJ5 . . . L 4 6.982 34.168 31.744 1 118.98 ? C4 OJ5 401 B 1 
HETATM 5 C C5 OJ5 . . . L 4 5.828 34.963 32.253 1 128.69 ? C5 OJ5 401 B 1 
HETATM 6 C C6 OJ5 . . . L 4 5.93 35.952 33.195 1 129.03 ? C6 OJ5 401 B 1 
HETATM 7 CL CL OJ5 . . . L 4 10.309 32.533 33.225 1 105.53 ? CL OJ5 401 B 1 
HETATM 8 C C OJ5 . . . L 4 9.033 32.991 32.133 1 106.31 ? C OJ5 401 B 1 
HETATM 9 C C15 OJ5 . . . L 4 7.95 33.693 32.627 1 109.79 ? C15 OJ5 401 B 1 
HETATM 10 C C3 OJ5 . . . L 4 7.131 33.924 30.381 1 116.15 ? C3 OJ5 401 B 1 
HETATM 11 C C1 OJ5 . . . L 4 9.163 32.706 30.79 1 110.6 ? C1 OJ5 401 B 1 
HETATM 12 C C14 OJ5 . . . L 4 4.433 34.993 31.796 1 129.13 ? C14 OJ5 401 B 1 
HETATM 13 C C7 OJ5 . . . L 4 3.831 36.051 32.479 1 129.4 ? C7 OJ5 401 B 1 
HETATM 14 N N OJ5 . . . L 4 4.741 36.613 33.331 1 127.45 ? N OJ5 401 B 1 
HETATM 15 C C9 OJ5 . . . L 4 3.579 34.301 30.873 1 128.91 ? C9 OJ5 401 B 1 
HETATM 16 N N2 OJ5 . . . L 4 2.309 34.71 30.657 1 132.5 ? N2 OJ5 401 B 1 
HETATM 17 C C8 OJ5 . . . L 4 1.903 35.769 31.386 1 132.46 ? C8 OJ5 401 B 1 
HETATM 18 C C13 OJ5 . . . L 4 4.767 32.068 30.82 1 120.68 ? C13 OJ5 401 B 1 
HETATM 19 C C12 OJ5 . . . L 4 4.392 30.736 30.226 1 119.21 ? C12 OJ5 401 B 1 
HETATM 20 O O OJ5 . . . L 4 4.54 30.732 28.809 1 113.27 ? O OJ5 401 B 1 
HETATM 21 C C11 OJ5 . . . L 4 3.693 31.717 28.231 1 114.34 ? C11 OJ5 401 B 1 
HETATM 22 C C10 OJ5 . . . L 4 4.032 33.1 28.727 1 121.82 ? C10 OJ5 401 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           22 
#