data_6YAT
#
_model_server_result.job_id            aEfDGAhQ30P5DtGsaZUIKw 
_model_server_result.datetime_utc      '2024-12-23 10:53:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yat 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":407}' 
#
_entry.id    6YAT 
#
_exptl.entry_id    6YAT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YAT 
_cell.length_a            111.68 
_cell.length_b            111.68 
_cell.length_c            171.486 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YAT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 177 A ASP 176 1_555 A N TPO 178 A TPO 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C TPO 178 A TPO 177 1_555 A N MET 179 A MET 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale3 A C ASN 183 A ASN 182 1_555 A N TPO 184 A TPO 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale4 A C TPO 184 A TPO 183 1_555 A N VAL 185 A VAL 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale5 B C ASP 177 B ASP 176 1_555 B N TPO 178 B TPO 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale6 B C TPO 178 B TPO 177 1_555 B N MET 179 B MET 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale7 B C ASN 183 B ASN 182 1_555 B N TPO 184 B TPO 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale8 B C TPO 184 B TPO 183 1_555 B N VAL 185 B VAL 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 163 n n 
C1 C2 GOL sing 164 n n 
C1 H11 GOL sing 165 n n 
C1 H12 GOL sing 166 n n 
O1 HO1 GOL sing 167 n n 
C2 O2 GOL sing 168 n n 
C2 C3 GOL sing 169 n n 
C2 H2 GOL sing 170 n n 
O2 HO2 GOL sing 171 n n 
C3 O3 GOL sing 172 n n 
C3 H31 GOL sing 173 n n 
C3 H32 GOL sing 174 n n 
O3 HO3 GOL sing 175 n n 
#
_atom_sites.entry_id                     6YAT 
_atom_sites.fract_transf_matrix[1][1]    0.008954 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008954 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005831 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3FX A 1 401 1 3FX 3FX . 
D 3 GOL A 1 402 5 GOL GOL . 
E 3 GOL A 1 403 6 GOL GOL . 
F 3 GOL A 1 404 7 GOL GOL . 
G 3 GOL A 1 405 8 GOL GOL . 
H 3 GOL A 1 406 9 GOL GOL . 
I 3 GOL A 1 407 10 GOL GOL . 
J 3 GOL A 1 408 11 GOL GOL . 
K 4 OJ5 A 1 409 1 OJ5 YYY . 
L 4 OJ5 B 1 401 2 OJ5 YYY . 
M 5 HOH A 1 501 14 HOH HOH . 
M 5 HOH A 2 502 29 HOH HOH . 
M 5 HOH A 3 503 34 HOH HOH . 
M 5 HOH A 4 504 45 HOH HOH . 
M 5 HOH A 5 505 10 HOH HOH . 
M 5 HOH A 6 506 6 HOH HOH . 
M 5 HOH A 7 507 33 HOH HOH . 
M 5 HOH A 8 508 39 HOH HOH . 
M 5 HOH A 9 509 35 HOH HOH . 
M 5 HOH A 10 510 43 HOH HOH . 
M 5 HOH A 11 511 32 HOH HOH . 
M 5 HOH A 12 512 8 HOH HOH . 
M 5 HOH A 13 513 16 HOH HOH . 
M 5 HOH A 14 514 47 HOH HOH . 
M 5 HOH A 15 515 50 HOH HOH . 
M 5 HOH A 16 516 44 HOH HOH . 
M 5 HOH A 17 517 26 HOH HOH . 
M 5 HOH A 18 518 12 HOH HOH . 
M 5 HOH A 19 519 20 HOH HOH . 
M 5 HOH A 20 520 31 HOH HOH . 
M 5 HOH A 21 521 51 HOH HOH . 
M 5 HOH A 22 522 4 HOH HOH . 
M 5 HOH A 23 523 48 HOH HOH . 
M 5 HOH A 24 524 25 HOH HOH . 
M 5 HOH A 25 525 40 HOH HOH . 
M 5 HOH A 26 526 42 HOH HOH . 
M 5 HOH A 27 527 18 HOH HOH . 
M 5 HOH A 28 528 15 HOH HOH . 
M 5 HOH A 29 529 9 HOH HOH . 
M 5 HOH A 30 530 17 HOH HOH . 
M 5 HOH A 31 531 2 HOH HOH . 
M 5 HOH A 32 532 30 HOH HOH . 
M 5 HOH A 33 533 37 HOH HOH . 
M 5 HOH A 34 534 38 HOH HOH . 
M 5 HOH A 35 535 3 HOH HOH . 
M 5 HOH A 36 536 49 HOH HOH . 
N 5 HOH B 1 501 53 HOH HOH . 
N 5 HOH B 2 502 21 HOH HOH . 
N 5 HOH B 3 503 27 HOH HOH . 
N 5 HOH B 4 504 7 HOH HOH . 
N 5 HOH B 5 505 5 HOH HOH . 
N 5 HOH B 6 506 24 HOH HOH . 
N 5 HOH B 7 507 52 HOH HOH . 
N 5 HOH B 8 508 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 3 14.44 -6.224 48.281 1 95.55 ? C1 GOL 407 A 1 
HETATM 2 O O1 GOL . . . I 3 14.616 -7.014 47.108 1 89.79 ? O1 GOL 407 A 1 
HETATM 3 C C2 GOL . . . I 3 15.536 -5.19 48.429 1 95.22 ? C2 GOL 407 A 1 
HETATM 4 O O2 GOL . . . I 3 16.715 -5.635 47.759 1 96.7 ? O2 GOL 407 A 1 
HETATM 5 C C3 GOL . . . I 3 15.856 -4.86 49.871 1 93.99 ? C3 GOL 407 A 1 
HETATM 6 O O3 GOL . . . I 3 15.406 -3.553 50.219 1 96.05 ? O3 GOL 407 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#