data_6YAU # _model_server_result.job_id 5G9KNHM9ipDFTcNHqNnqEw _model_server_result.datetime_utc '2025-03-04 21:23:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 6YAU # _exptl.entry_id 6YAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.82 _cell.angle_gamma 90 _cell.entry_id 6YAU _cell.length_a 114.75 _cell.length_b 32.53 _cell.length_c 39.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 153 1_555 A SG CYS 19 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 36 A CYS 181 1_555 A SG CYS 131 A CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf3 A SG CYS 109 A CYS 254 1_555 A SG CYS 123 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A O VAL 45 A VAL 190 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc2 A OE1 GLU 51 A GLU 196 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 A OE2 GLU 51 A GLU 196 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc4 A OD1 ASP 70 A ASP 215 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc5 A OD2 ASP 70 A ASP 215 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc6 A OE1 GLN 94 A GLN 239 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc7 A OD1 ASP 96 A ASP 241 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc8 A OD1 ASP 97 A ASP 242 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc9 A O GLU 107 A GLU 252 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc10 A OE2 GLU 107 A GLU 252 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc11 A OD1 ASP 108 A ASP 253 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc12 A OD1 ASN 119 A ASN 264 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc13 A O ASP 120 A ASP 265 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc14 A OD1 ASP 120 A ASP 265 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc15 A OE1 GLU 132 A GLU 277 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc16 A OE2 GLU 132 A GLU 277 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc17 B CA CA . A CA 1001 1_555 F O HOH . A HOH 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc18 B CA CA . A CA 1001 1_555 F O HOH . A HOH 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc19 B CA CA . A CA 1001 1_555 F O HOH . A HOH 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc20 C CA CA . A CA 1002 1_555 E O25 OJB . A OJB 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc21 C CA CA . A CA 1002 1_555 E O26 OJB . A OJB 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc22 D CA CA . A CA 1003 1_555 F O HOH . A HOH 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc23 D CA CA . A CA 1003 1_555 F O HOH . A HOH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc24 D CA CA . A CA 1003 1_555 F O HOH . A HOH 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6YAU _atom_sites.fract_transf_matrix[1][1] 0.008715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000582 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1001 1001 CA CA . C 2 CA A 1 1002 1002 CA CA . D 2 CA A 1 1003 1003 CA CA . E 3 OJB A 1 1004 1201 OJB INH . F 4 HOH A 1 1101 92 HOH HOH . F 4 HOH A 2 1102 126 HOH HOH . F 4 HOH A 3 1103 96 HOH HOH . F 4 HOH A 4 1104 54 HOH HOH . F 4 HOH A 5 1105 8 HOH HOH . F 4 HOH A 6 1106 64 HOH HOH . F 4 HOH A 7 1107 2 HOH HOH . F 4 HOH A 8 1108 151 HOH HOH . F 4 HOH A 9 1109 17 HOH HOH . F 4 HOH A 10 1110 148 HOH HOH . F 4 HOH A 11 1111 93 HOH HOH . F 4 HOH A 12 1112 39 HOH HOH . F 4 HOH A 13 1113 83 HOH HOH . F 4 HOH A 14 1114 98 HOH HOH . F 4 HOH A 15 1115 56 HOH HOH . F 4 HOH A 16 1116 73 HOH HOH . F 4 HOH A 17 1117 43 HOH HOH . F 4 HOH A 18 1118 95 HOH HOH . F 4 HOH A 19 1119 5 HOH HOH . F 4 HOH A 20 1120 94 HOH HOH . F 4 HOH A 21 1121 12 HOH HOH . F 4 HOH A 22 1122 18 HOH HOH . F 4 HOH A 23 1123 97 HOH HOH . F 4 HOH A 24 1124 42 HOH HOH . F 4 HOH A 25 1125 114 HOH HOH . F 4 HOH A 26 1126 155 HOH HOH . F 4 HOH A 27 1127 118 HOH HOH . F 4 HOH A 28 1128 14 HOH HOH . F 4 HOH A 29 1129 119 HOH HOH . F 4 HOH A 30 1130 32 HOH HOH . F 4 HOH A 31 1131 3 HOH HOH . F 4 HOH A 32 1132 68 HOH HOH . F 4 HOH A 33 1133 87 HOH HOH . F 4 HOH A 34 1134 167 HOH HOH . F 4 HOH A 35 1135 105 HOH HOH . F 4 HOH A 36 1136 6 HOH HOH . F 4 HOH A 37 1137 163 HOH HOH . F 4 HOH A 38 1138 101 HOH HOH . F 4 HOH A 39 1139 77 HOH HOH . F 4 HOH A 40 1140 16 HOH HOH . F 4 HOH A 41 1141 165 HOH HOH . F 4 HOH A 42 1142 102 HOH HOH . F 4 HOH A 43 1143 59 HOH HOH . F 4 HOH A 44 1144 1 HOH HOH . F 4 HOH A 45 1145 40 HOH HOH . F 4 HOH A 46 1146 51 HOH HOH . F 4 HOH A 47 1147 28 HOH HOH . F 4 HOH A 48 1148 110 HOH HOH . F 4 HOH A 49 1149 34 HOH HOH . F 4 HOH A 50 1150 106 HOH HOH . F 4 HOH A 51 1151 66 HOH HOH . F 4 HOH A 52 1152 35 HOH HOH . F 4 HOH A 53 1153 60 HOH HOH . F 4 HOH A 54 1154 147 HOH HOH . F 4 HOH A 55 1155 25 HOH HOH . F 4 HOH A 56 1156 55 HOH HOH . F 4 HOH A 57 1157 157 HOH HOH . F 4 HOH A 58 1158 31 HOH HOH . F 4 HOH A 59 1159 85 HOH HOH . F 4 HOH A 60 1160 139 HOH HOH . F 4 HOH A 61 1161 70 HOH HOH . F 4 HOH A 62 1162 121 HOH HOH . F 4 HOH A 63 1163 53 HOH HOH . F 4 HOH A 64 1164 132 HOH HOH . F 4 HOH A 65 1165 76 HOH HOH . F 4 HOH A 66 1166 15 HOH HOH . F 4 HOH A 67 1167 171 HOH HOH . F 4 HOH A 68 1168 88 HOH HOH . F 4 HOH A 69 1169 166 HOH HOH . F 4 HOH A 70 1170 11 HOH HOH . F 4 HOH A 71 1171 30 HOH HOH . F 4 HOH A 72 1172 38 HOH HOH . F 4 HOH A 73 1173 111 HOH HOH . F 4 HOH A 74 1174 62 HOH HOH . F 4 HOH A 75 1175 49 HOH HOH . F 4 HOH A 76 1176 81 HOH HOH . F 4 HOH A 77 1177 4 HOH HOH . F 4 HOH A 78 1178 154 HOH HOH . F 4 HOH A 79 1179 146 HOH HOH . F 4 HOH A 80 1180 71 HOH HOH . F 4 HOH A 81 1181 150 HOH HOH . F 4 HOH A 82 1182 57 HOH HOH . F 4 HOH A 83 1183 80 HOH HOH . F 4 HOH A 84 1184 90 HOH HOH . F 4 HOH A 85 1185 41 HOH HOH . F 4 HOH A 86 1186 26 HOH HOH . F 4 HOH A 87 1187 33 HOH HOH . F 4 HOH A 88 1188 143 HOH HOH . F 4 HOH A 89 1189 140 HOH HOH . F 4 HOH A 90 1190 134 HOH HOH . F 4 HOH A 91 1191 78 HOH HOH . F 4 HOH A 92 1192 115 HOH HOH . F 4 HOH A 93 1193 67 HOH HOH . F 4 HOH A 94 1194 63 HOH HOH . F 4 HOH A 95 1195 9 HOH HOH . F 4 HOH A 96 1196 52 HOH HOH . F 4 HOH A 97 1197 21 HOH HOH . F 4 HOH A 98 1198 108 HOH HOH . F 4 HOH A 99 1199 69 HOH HOH . F 4 HOH A 100 1200 135 HOH HOH . F 4 HOH A 101 1201 86 HOH HOH . F 4 HOH A 102 1202 174 HOH HOH . F 4 HOH A 103 1203 22 HOH HOH . F 4 HOH A 104 1204 152 HOH HOH . F 4 HOH A 105 1205 50 HOH HOH . F 4 HOH A 106 1206 164 HOH HOH . F 4 HOH A 107 1207 89 HOH HOH . F 4 HOH A 108 1208 104 HOH HOH . F 4 HOH A 109 1209 10 HOH HOH . F 4 HOH A 110 1210 117 HOH HOH . F 4 HOH A 111 1211 123 HOH HOH . F 4 HOH A 112 1212 161 HOH HOH . F 4 HOH A 113 1213 47 HOH HOH . F 4 HOH A 114 1214 142 HOH HOH . F 4 HOH A 115 1215 170 HOH HOH . F 4 HOH A 116 1216 84 HOH HOH . F 4 HOH A 117 1217 120 HOH HOH . F 4 HOH A 118 1218 107 HOH HOH . F 4 HOH A 119 1219 133 HOH HOH . F 4 HOH A 120 1220 29 HOH HOH . F 4 HOH A 121 1221 7 HOH HOH . F 4 HOH A 122 1222 58 HOH HOH . F 4 HOH A 123 1223 23 HOH HOH . F 4 HOH A 124 1224 127 HOH HOH . F 4 HOH A 125 1225 131 HOH HOH . F 4 HOH A 126 1226 74 HOH HOH . F 4 HOH A 127 1227 37 HOH HOH . F 4 HOH A 128 1228 116 HOH HOH . F 4 HOH A 129 1229 158 HOH HOH . F 4 HOH A 130 1230 13 HOH HOH . F 4 HOH A 131 1231 45 HOH HOH . F 4 HOH A 132 1232 103 HOH HOH . F 4 HOH A 133 1233 20 HOH HOH . F 4 HOH A 134 1234 91 HOH HOH . F 4 HOH A 135 1235 130 HOH HOH . F 4 HOH A 136 1236 61 HOH HOH . F 4 HOH A 137 1237 169 HOH HOH . F 4 HOH A 138 1238 27 HOH HOH . F 4 HOH A 139 1239 173 HOH HOH . F 4 HOH A 140 1240 153 HOH HOH . F 4 HOH A 141 1241 24 HOH HOH . F 4 HOH A 142 1242 100 HOH HOH . F 4 HOH A 143 1243 145 HOH HOH . F 4 HOH A 144 1244 65 HOH HOH . F 4 HOH A 145 1245 129 HOH HOH . F 4 HOH A 146 1246 162 HOH HOH . F 4 HOH A 147 1247 72 HOH HOH . F 4 HOH A 148 1248 144 HOH HOH . F 4 HOH A 149 1249 19 HOH HOH . F 4 HOH A 150 1250 48 HOH HOH . F 4 HOH A 151 1251 137 HOH HOH . F 4 HOH A 152 1252 159 HOH HOH . F 4 HOH A 153 1253 136 HOH HOH . F 4 HOH A 154 1254 44 HOH HOH . F 4 HOH A 155 1255 99 HOH HOH . F 4 HOH A 156 1256 172 HOH HOH . F 4 HOH A 157 1257 160 HOH HOH . F 4 HOH A 158 1258 124 HOH HOH . F 4 HOH A 159 1259 36 HOH HOH . F 4 HOH A 160 1260 46 HOH HOH . F 4 HOH A 161 1261 141 HOH HOH . F 4 HOH A 162 1262 125 HOH HOH . F 4 HOH A 163 1263 75 HOH HOH . F 4 HOH A 164 1264 109 HOH HOH . F 4 HOH A 165 1265 156 HOH HOH . F 4 HOH A 166 1266 149 HOH HOH . F 4 HOH A 167 1267 138 HOH HOH . F 4 HOH A 168 1268 168 HOH HOH . F 4 HOH A 169 1269 82 HOH HOH . F 4 HOH A 170 1270 128 HOH HOH . F 4 HOH A 171 1271 113 HOH HOH . F 4 HOH A 172 1272 122 HOH HOH . F 4 HOH A 173 1273 112 HOH HOH . F 4 HOH A 174 1274 79 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -23.186 _atom_site.Cartn_y 14.028 _atom_site.Cartn_z 6.332 _atom_site.occupancy 0.92 _atom_site.B_iso_or_equiv 18.99 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #