data_6YB4
#
_model_server_result.job_id            77_zDiOZ2LmjKv21is5Aeg 
_model_server_result.datetime_utc      '2024-12-22 06:25:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yb4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1203}' 
#
_entry.id    6YB4 
#
_exptl.entry_id    6YB4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6YB4 
_cell.length_a            79.407 
_cell.length_b            79.407 
_cell.length_c            137.969 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YB4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6YB4 
_atom_sites.fract_transf_matrix[1][1]    0.012593 
_atom_sites.fract_transf_matrix[1][2]    0.007271 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014542 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007248 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 AAA 1 1201 1 SO4 SO4 . 
C 2 SO4 AAA 1 1202 2 SO4 SO4 . 
D 3 EDO AAA 1 1203 1 EDO EDO . 
E 3 EDO AAA 1 1204 2 EDO EDO . 
F 3 EDO AAA 1 1205 3 EDO EDO . 
G 4 OJH AAA 1 1206 1 OJH LIG . 
H 5 HOH AAA 1 1301 149 HOH HOH . 
H 5 HOH AAA 2 1302 185 HOH HOH . 
H 5 HOH AAA 3 1303 191 HOH HOH . 
H 5 HOH AAA 4 1304 219 HOH HOH . 
H 5 HOH AAA 5 1305 150 HOH HOH . 
H 5 HOH AAA 6 1306 85 HOH HOH . 
H 5 HOH AAA 7 1307 174 HOH HOH . 
H 5 HOH AAA 8 1308 218 HOH HOH . 
H 5 HOH AAA 9 1309 127 HOH HOH . 
H 5 HOH AAA 10 1310 26 HOH HOH . 
H 5 HOH AAA 11 1311 86 HOH HOH . 
H 5 HOH AAA 12 1312 52 HOH HOH . 
H 5 HOH AAA 13 1313 205 HOH HOH . 
H 5 HOH AAA 14 1314 88 HOH HOH . 
H 5 HOH AAA 15 1315 221 HOH HOH . 
H 5 HOH AAA 16 1316 215 HOH HOH . 
H 5 HOH AAA 17 1317 19 HOH HOH . 
H 5 HOH AAA 18 1318 14 HOH HOH . 
H 5 HOH AAA 19 1319 69 HOH HOH . 
H 5 HOH AAA 20 1320 186 HOH HOH . 
H 5 HOH AAA 21 1321 222 HOH HOH . 
H 5 HOH AAA 22 1322 51 HOH HOH . 
H 5 HOH AAA 23 1323 89 HOH HOH . 
H 5 HOH AAA 24 1324 60 HOH HOH . 
H 5 HOH AAA 25 1325 120 HOH HOH . 
H 5 HOH AAA 26 1326 11 HOH HOH . 
H 5 HOH AAA 27 1327 58 HOH HOH . 
H 5 HOH AAA 28 1328 40 HOH HOH . 
H 5 HOH AAA 29 1329 93 HOH HOH . 
H 5 HOH AAA 30 1330 42 HOH HOH . 
H 5 HOH AAA 31 1331 160 HOH HOH . 
H 5 HOH AAA 32 1332 64 HOH HOH . 
H 5 HOH AAA 33 1333 122 HOH HOH . 
H 5 HOH AAA 34 1334 5 HOH HOH . 
H 5 HOH AAA 35 1335 102 HOH HOH . 
H 5 HOH AAA 36 1336 151 HOH HOH . 
H 5 HOH AAA 37 1337 136 HOH HOH . 
H 5 HOH AAA 38 1338 91 HOH HOH . 
H 5 HOH AAA 39 1339 176 HOH HOH . 
H 5 HOH AAA 40 1340 220 HOH HOH . 
H 5 HOH AAA 41 1341 156 HOH HOH . 
H 5 HOH AAA 42 1342 184 HOH HOH . 
H 5 HOH AAA 43 1343 124 HOH HOH . 
H 5 HOH AAA 44 1344 214 HOH HOH . 
H 5 HOH AAA 45 1345 32 HOH HOH . 
H 5 HOH AAA 46 1346 96 HOH HOH . 
H 5 HOH AAA 47 1347 82 HOH HOH . 
H 5 HOH AAA 48 1348 70 HOH HOH . 
H 5 HOH AAA 49 1349 134 HOH HOH . 
H 5 HOH AAA 50 1350 123 HOH HOH . 
H 5 HOH AAA 51 1351 38 HOH HOH . 
H 5 HOH AAA 52 1352 188 HOH HOH . 
H 5 HOH AAA 53 1353 22 HOH HOH . 
H 5 HOH AAA 54 1354 168 HOH HOH . 
H 5 HOH AAA 55 1355 198 HOH HOH . 
H 5 HOH AAA 56 1356 80 HOH HOH . 
H 5 HOH AAA 57 1357 112 HOH HOH . 
H 5 HOH AAA 58 1358 68 HOH HOH . 
H 5 HOH AAA 59 1359 217 HOH HOH . 
H 5 HOH AAA 60 1360 20 HOH HOH . 
H 5 HOH AAA 61 1361 3 HOH HOH . 
H 5 HOH AAA 62 1362 104 HOH HOH . 
H 5 HOH AAA 63 1363 187 HOH HOH . 
H 5 HOH AAA 64 1364 36 HOH HOH . 
H 5 HOH AAA 65 1365 27 HOH HOH . 
H 5 HOH AAA 66 1366 108 HOH HOH . 
H 5 HOH AAA 67 1367 148 HOH HOH . 
H 5 HOH AAA 68 1368 175 HOH HOH . 
H 5 HOH AAA 69 1369 138 HOH HOH . 
H 5 HOH AAA 70 1370 2 HOH HOH . 
H 5 HOH AAA 71 1371 78 HOH HOH . 
H 5 HOH AAA 72 1372 183 HOH HOH . 
H 5 HOH AAA 73 1373 43 HOH HOH . 
H 5 HOH AAA 74 1374 9 HOH HOH . 
H 5 HOH AAA 75 1375 115 HOH HOH . 
H 5 HOH AAA 76 1376 65 HOH HOH . 
H 5 HOH AAA 77 1377 208 HOH HOH . 
H 5 HOH AAA 78 1378 4 HOH HOH . 
H 5 HOH AAA 79 1379 23 HOH HOH . 
H 5 HOH AAA 80 1380 10 HOH HOH . 
H 5 HOH AAA 81 1381 6 HOH HOH . 
H 5 HOH AAA 82 1382 155 HOH HOH . 
H 5 HOH AAA 83 1383 128 HOH HOH . 
H 5 HOH AAA 84 1384 25 HOH HOH . 
H 5 HOH AAA 85 1385 189 HOH HOH . 
H 5 HOH AAA 86 1386 170 HOH HOH . 
H 5 HOH AAA 87 1387 117 HOH HOH . 
H 5 HOH AAA 88 1388 39 HOH HOH . 
H 5 HOH AAA 89 1389 143 HOH HOH . 
H 5 HOH AAA 90 1390 204 HOH HOH . 
H 5 HOH AAA 91 1391 50 HOH HOH . 
H 5 HOH AAA 92 1392 56 HOH HOH . 
H 5 HOH AAA 93 1393 135 HOH HOH . 
H 5 HOH AAA 94 1394 62 HOH HOH . 
H 5 HOH AAA 95 1395 105 HOH HOH . 
H 5 HOH AAA 96 1396 196 HOH HOH . 
H 5 HOH AAA 97 1397 146 HOH HOH . 
H 5 HOH AAA 98 1398 167 HOH HOH . 
H 5 HOH AAA 99 1399 47 HOH HOH . 
H 5 HOH AAA 100 1400 195 HOH HOH . 
H 5 HOH AAA 101 1401 15 HOH HOH . 
H 5 HOH AAA 102 1402 55 HOH HOH . 
H 5 HOH AAA 103 1403 29 HOH HOH . 
H 5 HOH AAA 104 1404 177 HOH HOH . 
H 5 HOH AAA 105 1405 141 HOH HOH . 
H 5 HOH AAA 106 1406 30 HOH HOH . 
H 5 HOH AAA 107 1407 98 HOH HOH . 
H 5 HOH AAA 108 1408 190 HOH HOH . 
H 5 HOH AAA 109 1409 71 HOH HOH . 
H 5 HOH AAA 110 1410 125 HOH HOH . 
H 5 HOH AAA 111 1411 75 HOH HOH . 
H 5 HOH AAA 112 1412 59 HOH HOH . 
H 5 HOH AAA 113 1413 1 HOH HOH . 
H 5 HOH AAA 114 1414 41 HOH HOH . 
H 5 HOH AAA 115 1415 8 HOH HOH . 
H 5 HOH AAA 116 1416 17 HOH HOH . 
H 5 HOH AAA 117 1417 109 HOH HOH . 
H 5 HOH AAA 118 1418 61 HOH HOH . 
H 5 HOH AAA 119 1419 165 HOH HOH . 
H 5 HOH AAA 120 1420 210 HOH HOH . 
H 5 HOH AAA 121 1421 18 HOH HOH . 
H 5 HOH AAA 122 1422 144 HOH HOH . 
H 5 HOH AAA 123 1423 164 HOH HOH . 
H 5 HOH AAA 124 1424 173 HOH HOH . 
H 5 HOH AAA 125 1425 114 HOH HOH . 
H 5 HOH AAA 126 1426 13 HOH HOH . 
H 5 HOH AAA 127 1427 99 HOH HOH . 
H 5 HOH AAA 128 1428 213 HOH HOH . 
H 5 HOH AAA 129 1429 31 HOH HOH . 
H 5 HOH AAA 130 1430 110 HOH HOH . 
H 5 HOH AAA 131 1431 66 HOH HOH . 
H 5 HOH AAA 132 1432 21 HOH HOH . 
H 5 HOH AAA 133 1433 179 HOH HOH . 
H 5 HOH AAA 134 1434 76 HOH HOH . 
H 5 HOH AAA 135 1435 126 HOH HOH . 
H 5 HOH AAA 136 1436 28 HOH HOH . 
H 5 HOH AAA 137 1437 166 HOH HOH . 
H 5 HOH AAA 138 1438 172 HOH HOH . 
H 5 HOH AAA 139 1439 77 HOH HOH . 
H 5 HOH AAA 140 1440 92 HOH HOH . 
H 5 HOH AAA 141 1441 103 HOH HOH . 
H 5 HOH AAA 142 1442 139 HOH HOH . 
H 5 HOH AAA 143 1443 72 HOH HOH . 
H 5 HOH AAA 144 1444 111 HOH HOH . 
H 5 HOH AAA 145 1445 171 HOH HOH . 
H 5 HOH AAA 146 1446 73 HOH HOH . 
H 5 HOH AAA 147 1447 95 HOH HOH . 
H 5 HOH AAA 148 1448 83 HOH HOH . 
H 5 HOH AAA 149 1449 107 HOH HOH . 
H 5 HOH AAA 150 1450 79 HOH HOH . 
H 5 HOH AAA 151 1451 192 HOH HOH . 
H 5 HOH AAA 152 1452 142 HOH HOH . 
H 5 HOH AAA 153 1453 116 HOH HOH . 
H 5 HOH AAA 154 1454 74 HOH HOH . 
H 5 HOH AAA 155 1455 209 HOH HOH . 
H 5 HOH AAA 156 1456 145 HOH HOH . 
H 5 HOH AAA 157 1457 119 HOH HOH . 
H 5 HOH AAA 158 1458 16 HOH HOH . 
H 5 HOH AAA 159 1459 48 HOH HOH . 
H 5 HOH AAA 160 1460 35 HOH HOH . 
H 5 HOH AAA 161 1461 203 HOH HOH . 
H 5 HOH AAA 162 1462 197 HOH HOH . 
H 5 HOH AAA 163 1463 118 HOH HOH . 
H 5 HOH AAA 164 1464 12 HOH HOH . 
H 5 HOH AAA 165 1465 37 HOH HOH . 
H 5 HOH AAA 166 1466 216 HOH HOH . 
H 5 HOH AAA 167 1467 94 HOH HOH . 
H 5 HOH AAA 168 1468 106 HOH HOH . 
H 5 HOH AAA 169 1469 33 HOH HOH . 
H 5 HOH AAA 170 1470 201 HOH HOH . 
H 5 HOH AAA 171 1471 207 HOH HOH . 
H 5 HOH AAA 172 1472 157 HOH HOH . 
H 5 HOH AAA 173 1473 133 HOH HOH . 
H 5 HOH AAA 174 1474 182 HOH HOH . 
H 5 HOH AAA 175 1475 81 HOH HOH . 
H 5 HOH AAA 176 1476 57 HOH HOH . 
H 5 HOH AAA 177 1477 129 HOH HOH . 
H 5 HOH AAA 178 1478 200 HOH HOH . 
H 5 HOH AAA 179 1479 100 HOH HOH . 
H 5 HOH AAA 180 1480 44 HOH HOH . 
H 5 HOH AAA 181 1481 152 HOH HOH . 
H 5 HOH AAA 182 1482 194 HOH HOH . 
H 5 HOH AAA 183 1483 54 HOH HOH . 
H 5 HOH AAA 184 1484 53 HOH HOH . 
H 5 HOH AAA 185 1485 67 HOH HOH . 
H 5 HOH AAA 186 1486 113 HOH HOH . 
H 5 HOH AAA 187 1487 87 HOH HOH . 
H 5 HOH AAA 188 1488 63 HOH HOH . 
H 5 HOH AAA 189 1489 212 HOH HOH . 
H 5 HOH AAA 190 1490 202 HOH HOH . 
H 5 HOH AAA 191 1491 7 HOH HOH . 
H 5 HOH AAA 192 1492 46 HOH HOH . 
H 5 HOH AAA 193 1493 132 HOH HOH . 
H 5 HOH AAA 194 1494 137 HOH HOH . 
H 5 HOH AAA 195 1495 147 HOH HOH . 
H 5 HOH AAA 196 1496 140 HOH HOH . 
H 5 HOH AAA 197 1497 161 HOH HOH . 
H 5 HOH AAA 198 1498 97 HOH HOH . 
H 5 HOH AAA 199 1499 180 HOH HOH . 
H 5 HOH AAA 200 1500 49 HOH HOH . 
H 5 HOH AAA 201 1501 84 HOH HOH . 
H 5 HOH AAA 202 1502 153 HOH HOH . 
H 5 HOH AAA 203 1503 121 HOH HOH . 
H 5 HOH AAA 204 1504 34 HOH HOH . 
H 5 HOH AAA 205 1505 45 HOH HOH . 
H 5 HOH AAA 206 1506 199 HOH HOH . 
H 5 HOH AAA 207 1507 101 HOH HOH . 
H 5 HOH AAA 208 1508 162 HOH HOH . 
H 5 HOH AAA 209 1509 181 HOH HOH . 
H 5 HOH AAA 210 1510 193 HOH HOH . 
H 5 HOH AAA 211 1511 154 HOH HOH . 
H 5 HOH AAA 212 1512 169 HOH HOH . 
H 5 HOH AAA 213 1513 163 HOH HOH . 
H 5 HOH AAA 214 1514 158 HOH HOH . 
H 5 HOH AAA 215 1515 131 HOH HOH . 
H 5 HOH AAA 216 1516 206 HOH HOH . 
H 5 HOH AAA 217 1517 159 HOH HOH . 
H 5 HOH AAA 218 1518 24 HOH HOH . 
H 5 HOH AAA 219 1519 211 HOH HOH . 
H 5 HOH AAA 220 1520 130 HOH HOH . 
H 5 HOH AAA 221 1521 90 HOH HOH . 
H 5 HOH AAA 222 1522 178 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -14.397 50.657 17.589 1 54.4 ? C1 EDO 1203 AAA 1 
HETATM 2 O O1 EDO . . . D 3 -14.416 51.298 16.333 1 52.55 ? O1 EDO 1203 AAA 1 
HETATM 3 C C2 EDO . . . D 3 -15.56 49.764 17.795 1 52 ? C2 EDO 1203 AAA 1 
HETATM 4 O O2 EDO . . . D 3 -15.444 48.922 18.922 1 53.92 ? O2 EDO 1203 AAA 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#