data_6YBP
#
_model_server_result.job_id            KDkwd6CzJ0I-pufFje56xg 
_model_server_result.datetime_utc      '2025-03-25 07:42:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ybp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":601}' 
#
_entry.id    6YBP 
#
_exptl.entry_id    6YBP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.534 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COENZYME A' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YBP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 G NZ LYS 633 G LYS 633 1_555 S C11 BTI . G BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? 
covale ? covale2 H NZ LYS 633 H LYS 633 1_555 T C11 BTI . H BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.523 ? 
covale ? covale3 I NZ LYS 633 I LYS 633 1_555 U C11 BTI . I BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.535 ? 
covale ? covale4 J NZ LYS 633 J LYS 633 1_555 V C11 BTI . J BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale5 K NZ LYS 633 K LYS 633 1_555 W C11 BTI . K BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? 
covale ? covale6 L NZ LYS 633 L LYS 633 1_555 X C11 BTI . L BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? 
#
_chem_comp.formula           'C21 H36 N7 O16 P3 S' 
_chem_comp.formula_weight    767.534 
_chem_comp.id                COA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6YBP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 COA A 1 601 601 COA COA . 
N 3 COA B 1 601 601 COA COA . 
O 3 COA C 1 601 601 COA COA . 
P 3 COA D 1 601 601 COA COA . 
Q 3 COA E 1 601 601 COA COA . 
R 3 COA F 1 601 601 COA COA . 
S 4 BTI G 1 701 701 BTI BTI . 
T 4 BTI H 1 701 701 BTI BTI . 
U 4 BTI I 1 701 701 BTI BTI . 
V 4 BTI J 1 701 701 BTI BTI . 
W 4 BTI K 1 701 701 BTI BTI . 
X 4 BTI L 1 701 701 BTI BTI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A COA . . . P 3 128.422 100.909 144.722 1 129.81 ? N1A COA 601 D 1 
HETATM 2 C C2A COA . . . P 3 128.845 99.986 143.874 1 129.81 ? C2A COA 601 D 1 
HETATM 3 N N3A COA . . . P 3 128.37 99.885 142.635 1 129.81 ? N3A COA 601 D 1 
HETATM 4 C C4A COA . . . P 3 127.445 100.721 142.209 1 129.81 ? C4A COA 601 D 1 
HETATM 5 C C5A COA . . . P 3 126.97 101.733 143.106 1 129.81 ? C5A COA 601 D 1 
HETATM 6 C C6A COA . . . P 3 127.503 101.777 144.368 1 129.81 ? C6A COA 601 D 1 
HETATM 7 N N6A COA . . . P 3 127.054 102.783 145.314 1 129.81 ? N6A COA 601 D 1 
HETATM 8 N N7A COA . . . P 3 125.97 102.484 142.349 1 129.81 ? N7A COA 601 D 1 
HETATM 9 C C8A COA . . . P 3 125.889 101.942 141.13 1 129.81 ? C8A COA 601 D 1 
HETATM 10 N N9A COA . . . P 3 126.741 100.937 141.084 1 129.81 ? N9A COA 601 D 1 
HETATM 11 C C1B COA . . . P 3 126.9 100.162 139.908 1 129.81 ? C1B COA 601 D 1 
HETATM 12 C C2B COA . . . P 3 126.432 98.769 140.095 1 129.81 ? C2B COA 601 D 1 
HETATM 13 O O2B COA . . . P 3 127.561 97.862 140.057 1 129.81 ? O2B COA 601 D 1 
HETATM 14 C C3B COA . . . P 3 125.53 98.475 138.987 1 129.81 ? C3B COA 601 D 1 
HETATM 15 O O3B COA . . . P 3 126.249 97.761 137.949 1 129.81 ? O3B COA 601 D 1 
HETATM 16 P P3B COA . . . P 3 125.722 97.839 136.389 1 129.81 ? P3B COA 601 D 1 
HETATM 17 O O7A COA . . . P 3 126.149 96.714 135.56 1 129.81 ? O7A COA 601 D 1 
HETATM 18 O O8A COA . . . P 3 126.199 99.007 135.655 1 129.81 ? O8A COA 601 D 1 
HETATM 19 O O9A COA . . . P 3 124.274 97.865 136.231 1 129.81 ? O9A COA 601 D 1 
HETATM 20 C C4B COA . . . P 3 125.044 99.781 138.48 1 129.81 ? C4B COA 601 D 1 
HETATM 21 O O4B COA . . . P 3 126.091 100.787 138.807 1 129.81 ? O4B COA 601 D 1 
HETATM 22 C C5B COA . . . P 3 123.79 100.135 139.2 1 129.81 ? C5B COA 601 D 1 
HETATM 23 O O5B COA . . . P 3 122.663 99.835 138.408 1 129.81 ? O5B COA 601 D 1 
HETATM 24 P P1A COA . . . P 3 121.294 100.75 138.649 1 129.81 ? P1A COA 601 D 1 
HETATM 25 O O1A COA . . . P 3 120.093 99.926 138.608 1 129.81 ? O1A COA 601 D 1 
HETATM 26 O O2A COA . . . P 3 121.051 101.648 137.526 1 129.81 ? O2A COA 601 D 1 
HETATM 27 O O3A COA . . . P 3 121.422 101.58 140.091 1 129.81 ? O3A COA 601 D 1 
HETATM 28 P P2A COA . . . P 3 120.142 101.907 141.105 1 129.81 ? P2A COA 601 D 1 
HETATM 29 O O4A COA . . . P 3 119.427 103.104 140.677 1 129.81 ? O4A COA 601 D 1 
HETATM 30 O O5A COA . . . P 3 119.091 100.903 140.98 1 129.81 ? O5A COA 601 D 1 
HETATM 31 O O6A COA . . . P 3 120.651 102.054 142.691 1 129.81 ? O6A COA 601 D 1 
HETATM 32 C CBP COA . . . P 3 121.912 101.334 144.669 1 129.81 ? CBP COA 601 D 1 
HETATM 33 C CCP COA . . . P 3 121.836 101.376 143.104 1 129.81 ? CCP COA 601 D 1 
HETATM 34 C CDP COA . . . P 3 122.648 100.072 145.111 1 129.81 ? CDP COA 601 D 1 
HETATM 35 C CEP COA . . . P 3 122.66 102.561 145.19 1 129.81 ? CEP COA 601 D 1 
HETATM 36 C CAP COA . . . P 3 120.483 101.337 145.256 1 129.81 ? CAP COA 601 D 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           58 
_model_server_stats.create_model_time_ms    148 
_model_server_stats.query_time_ms           1008 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           36 
#