data_6YBP
#
_model_server_result.job_id            3B8xGbqKWbt3yogvgEjA5w 
_model_server_result.datetime_utc      '2025-03-24 18:34:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ybp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":701}' 
#
_entry.id    6YBP 
#
_exptl.entry_id    6YBP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              228.311 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YBP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 G NZ LYS 633 G LYS 633 1_555 S C11 BTI . G BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? 
covale ? covale2 H NZ LYS 633 H LYS 633 1_555 T C11 BTI . H BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.523 ? 
covale ? covale3 I NZ LYS 633 I LYS 633 1_555 U C11 BTI . I BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.535 ? 
covale ? covale4 J NZ LYS 633 J LYS 633 1_555 V C11 BTI . J BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale5 K NZ LYS 633 K LYS 633 1_555 W C11 BTI . K BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? 
covale ? covale6 L NZ LYS 633 L LYS 633 1_555 X C11 BTI . L BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? 
#
_chem_comp.formula           'C10 H16 N2 O2 S' 
_chem_comp.formula_weight    228.311 
_chem_comp.id                BTI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6YBP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 COA A 1 601 601 COA COA . 
N 3 COA B 1 601 601 COA COA . 
O 3 COA C 1 601 601 COA COA . 
P 3 COA D 1 601 601 COA COA . 
Q 3 COA E 1 601 601 COA COA . 
R 3 COA F 1 601 601 COA COA . 
S 4 BTI G 1 701 701 BTI BTI . 
T 4 BTI H 1 701 701 BTI BTI . 
U 4 BTI I 1 701 701 BTI BTI . 
V 4 BTI J 1 701 701 BTI BTI . 
W 4 BTI K 1 701 701 BTI BTI . 
X 4 BTI L 1 701 701 BTI BTI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 BTI . . . V 4 174.656 196.737 154.158 1 108.32 ? C11 BTI 701 J 1 
HETATM 2 O O11 BTI . . . V 4 174.414 197.781 154.68 1 108.32 ? O11 BTI 701 J 1 
HETATM 3 C C10 BTI . . . V 4 174.409 195.391 154.746 1 108.32 ? C10 BTI 701 J 1 
HETATM 4 C C9 BTI . . . V 4 173.309 195.4 155.738 1 108.32 ? C9 BTI 701 J 1 
HETATM 5 C C8 BTI . . . V 4 172.292 194.328 155.447 1 108.32 ? C8 BTI 701 J 1 
HETATM 6 C C7 BTI . . . V 4 172.915 192.95 155.268 1 108.32 ? C7 BTI 701 J 1 
HETATM 7 C C2 BTI . . . V 4 172.019 192.004 154.526 1 108.32 ? C2 BTI 701 J 1 
HETATM 8 S S1 BTI . . . V 4 170.369 192.766 154.396 1 108.32 ? S1 BTI 701 J 1 
HETATM 9 C C6 BTI . . . V 4 169.674 191.132 154.128 1 108.32 ? C6 BTI 701 J 1 
HETATM 10 C C5 BTI . . . V 4 170.349 190.246 155.165 1 108.32 ? C5 BTI 701 J 1 
HETATM 11 N N3 BTI . . . V 4 169.971 190.492 156.525 1 108.32 ? N3 BTI 701 J 1 
HETATM 12 C C3 BTI . . . V 4 171.035 190.278 157.316 1 108.32 ? C3 BTI 701 J 1 
HETATM 13 O O3 BTI . . . V 4 171.015 189.802 158.459 1 108.32 ? O3 BTI 701 J 1 
HETATM 14 N N2 BTI . . . V 4 172.13 190.617 156.61 1 108.32 ? N2 BTI 701 J 1 
HETATM 15 C C4 BTI . . . V 4 171.846 190.629 155.2 1 108.32 ? C4 BTI 701 J 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           15 
#