data_6YCX # _model_server_result.job_id FsF_lwHxR3B5mdu5KC7bUg _model_server_result.datetime_utc '2025-03-21 00:24:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ycx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":902}' # _entry.id 6YCX # _exptl.entry_id 6YCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.939 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'VANADATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YCX _cell.length_a 168.24 _cell.length_b 287.43 _cell.length_c 78.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 18 A VAL 18 1_555 A N SEP 19 A SEP 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale2 A C SEP 19 A SEP 19 1_555 A N ASN 20 A ASN 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale3 B C VAL 18 B VAL 18 1_555 B N SEP 19 B SEP 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 B C SEP 19 B SEP 19 1_555 B N ASN 20 B ASN 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? metalc ? metalc1 A OG1 THR 198 A THR 198 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc2 A OG SER 246 A SER 246 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc3 G O1B ADP . A ADP 901 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc4 G O2B ADP . A ADP 901 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc5 H O2 VO4 . A VO4 902 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc6 J O3B ADP . B ADP 901 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? # _chem_comp.formula 'O4 V -3' _chem_comp.formula_weight 114.939 _chem_comp.id VO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'VANADATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag V O1 VO4 doub 436 n n V O2 VO4 sing 437 n n V O3 VO4 sing 438 n n V O4 VO4 sing 439 n n # _atom_sites.entry_id 6YCX _atom_sites.fract_transf_matrix[1][1] 0.005944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 ADP A 1 901 901 ADP ADP . H 6 VO4 A 1 902 1001 VO4 VO4 . I 7 MG A 1 903 1 MG MG . J 5 ADP B 1 901 901 ADP ADP . K 6 VO4 B 1 902 1001 VO4 VO4 . L 7 MG B 1 903 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 V V VO4 . . . K 6 49.653 337.471 -69.297 1 43.14 ? V VO4 902 B 1 HETATM 2 O O1 VO4 . . . K 6 51.117 336.926 -69.311 1 44.86 ? O1 VO4 902 B 1 HETATM 3 O O2 VO4 . . . K 6 49.539 338.489 -68.126 1 43.02 ? O2 VO4 902 B 1 HETATM 4 O O3 VO4 . . . K 6 49.337 338.21 -70.637 1 46.45 ? O3 VO4 902 B 1 HETATM 5 O O4 VO4 . . . K 6 48.617 336.31 -69.146 1 42.88 ? O4 VO4 902 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #