data_6YD1 # _model_server_result.job_id 2ES67KgxC4VQ5iKx6p7rUw _model_server_result.datetime_utc '2025-07-12 18:58:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yd1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6YD1 # _exptl.entry_id 6YD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 187.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,6-difluoro-3-methoxybenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.44 _cell.angle_gamma 90 _cell.entry_id 6YD1 _cell.length_a 71.334 _cell.length_b 51.139 _cell.length_c 87.823 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 40 A GLN 48 1_555 D K K . A K 403 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.496 ? metalc ? metalc2 A O LEU 192 A LEU 200 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc3 A O VAL 195 A VAL 203 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 A OD1 ASN 200 A ASN 208 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc5 A O LEU 201 A LEU 209 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc6 C OAH OLQ . A OLQ 402 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? # _chem_comp.formula 'C8 H7 F2 N O2' _chem_comp.formula_weight 187.143 _chem_comp.id OLQ _chem_comp.mon_nstd_flag . _chem_comp.name 2,6-difluoro-3-methoxybenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,6-bis(fluoranyl)-3-methoxy-benzamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAM OAL OLQ sing 269 n n OAL CAI OLQ sing 270 n n CAJ CAI OLQ doub 271 n y CAJ CAE OLQ sing 272 n y CAI CAB OLQ sing 273 n y CAE CAD OLQ doub 274 n y NAA CAG OLQ sing 275 n n CAB FAF OLQ sing 276 n n CAB CAC OLQ doub 277 n y CAD CAC OLQ sing 278 n y CAD FAK OLQ sing 279 n n CAC CAG OLQ sing 280 n n CAG OAH OLQ doub 281 n n CAE HAE OLQ sing 282 n n CAJ HAJ OLQ sing 283 n n CAM HAO OLQ sing 284 n n CAM HAM OLQ sing 285 n n CAM HAN OLQ sing 286 n n NAA HAP OLQ sing 287 n n NAA HAA OLQ sing 288 n n # _atom_sites.entry_id 6YD1 _atom_sites.fract_transf_matrix[1][1] 0.014019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005225 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 401 1 GDP GDP . C 3 OLQ A 1 402 1 OLQ FRA . D 4 K A 1 403 1 K K . E 5 HOH A 1 501 49 HOH HOH . E 5 HOH A 2 502 28 HOH HOH . E 5 HOH A 3 503 101 HOH HOH . E 5 HOH A 4 504 40 HOH HOH . E 5 HOH A 5 505 84 HOH HOH . E 5 HOH A 6 506 121 HOH HOH . E 5 HOH A 7 507 56 HOH HOH . E 5 HOH A 8 508 32 HOH HOH . E 5 HOH A 9 509 3 HOH HOH . E 5 HOH A 10 510 86 HOH HOH . E 5 HOH A 11 511 123 HOH HOH . E 5 HOH A 12 512 22 HOH HOH . E 5 HOH A 13 513 14 HOH HOH . E 5 HOH A 14 514 87 HOH HOH . E 5 HOH A 15 515 113 HOH HOH . E 5 HOH A 16 516 95 HOH HOH . E 5 HOH A 17 517 180 HOH HOH . E 5 HOH A 18 518 48 HOH HOH . E 5 HOH A 19 519 31 HOH HOH . E 5 HOH A 20 520 21 HOH HOH . E 5 HOH A 21 521 178 HOH HOH . E 5 HOH A 22 522 68 HOH HOH . E 5 HOH A 23 523 35 HOH HOH . E 5 HOH A 24 524 2 HOH HOH . E 5 HOH A 25 525 10 HOH HOH . E 5 HOH A 26 526 184 HOH HOH . E 5 HOH A 27 527 1 HOH HOH . E 5 HOH A 28 528 197 HOH HOH . E 5 HOH A 29 529 45 HOH HOH . E 5 HOH A 30 530 146 HOH HOH . E 5 HOH A 31 531 131 HOH HOH . E 5 HOH A 32 532 203 HOH HOH . E 5 HOH A 33 533 152 HOH HOH . E 5 HOH A 34 534 150 HOH HOH . E 5 HOH A 35 535 133 HOH HOH . E 5 HOH A 36 536 145 HOH HOH . E 5 HOH A 37 537 25 HOH HOH . E 5 HOH A 38 538 82 HOH HOH . E 5 HOH A 39 539 18 HOH HOH . E 5 HOH A 40 540 9 HOH HOH . E 5 HOH A 41 541 60 HOH HOH . E 5 HOH A 42 542 42 HOH HOH . E 5 HOH A 43 543 171 HOH HOH . E 5 HOH A 44 544 27 HOH HOH . E 5 HOH A 45 545 177 HOH HOH . E 5 HOH A 46 546 132 HOH HOH . E 5 HOH A 47 547 163 HOH HOH . E 5 HOH A 48 548 175 HOH HOH . E 5 HOH A 49 549 104 HOH HOH . E 5 HOH A 50 550 8 HOH HOH . E 5 HOH A 51 551 198 HOH HOH . E 5 HOH A 52 552 52 HOH HOH . E 5 HOH A 53 553 4 HOH HOH . E 5 HOH A 54 554 19 HOH HOH . E 5 HOH A 55 555 206 HOH HOH . E 5 HOH A 56 556 29 HOH HOH . E 5 HOH A 57 557 59 HOH HOH . E 5 HOH A 58 558 51 HOH HOH . E 5 HOH A 59 559 24 HOH HOH . E 5 HOH A 60 560 166 HOH HOH . E 5 HOH A 61 561 93 HOH HOH . E 5 HOH A 62 562 201 HOH HOH . E 5 HOH A 63 563 64 HOH HOH . E 5 HOH A 64 564 190 HOH HOH . E 5 HOH A 65 565 126 HOH HOH . E 5 HOH A 66 566 76 HOH HOH . E 5 HOH A 67 567 164 HOH HOH . E 5 HOH A 68 568 124 HOH HOH . E 5 HOH A 69 569 16 HOH HOH . E 5 HOH A 70 570 172 HOH HOH . E 5 HOH A 71 571 20 HOH HOH . E 5 HOH A 72 572 173 HOH HOH . E 5 HOH A 73 573 7 HOH HOH . E 5 HOH A 74 574 5 HOH HOH . E 5 HOH A 75 575 153 HOH HOH . E 5 HOH A 76 576 58 HOH HOH . E 5 HOH A 77 577 99 HOH HOH . E 5 HOH A 78 578 174 HOH HOH . E 5 HOH A 79 579 75 HOH HOH . E 5 HOH A 80 580 115 HOH HOH . E 5 HOH A 81 581 15 HOH HOH . E 5 HOH A 82 582 91 HOH HOH . E 5 HOH A 83 583 81 HOH HOH . E 5 HOH A 84 584 112 HOH HOH . E 5 HOH A 85 585 116 HOH HOH . E 5 HOH A 86 586 72 HOH HOH . E 5 HOH A 87 587 34 HOH HOH . E 5 HOH A 88 588 63 HOH HOH . E 5 HOH A 89 589 12 HOH HOH . E 5 HOH A 90 590 44 HOH HOH . E 5 HOH A 91 591 176 HOH HOH . E 5 HOH A 92 592 155 HOH HOH . E 5 HOH A 93 593 78 HOH HOH . E 5 HOH A 94 594 165 HOH HOH . E 5 HOH A 95 595 39 HOH HOH . E 5 HOH A 96 596 74 HOH HOH . E 5 HOH A 97 597 107 HOH HOH . E 5 HOH A 98 598 194 HOH HOH . E 5 HOH A 99 599 88 HOH HOH . E 5 HOH A 100 600 160 HOH HOH . E 5 HOH A 101 601 129 HOH HOH . E 5 HOH A 102 602 90 HOH HOH . E 5 HOH A 103 603 128 HOH HOH . E 5 HOH A 104 604 92 HOH HOH . E 5 HOH A 105 605 151 HOH HOH . E 5 HOH A 106 606 17 HOH HOH . E 5 HOH A 107 607 62 HOH HOH . E 5 HOH A 108 608 182 HOH HOH . E 5 HOH A 109 609 181 HOH HOH . E 5 HOH A 110 610 43 HOH HOH . E 5 HOH A 111 611 46 HOH HOH . E 5 HOH A 112 612 154 HOH HOH . E 5 HOH A 113 613 6 HOH HOH . E 5 HOH A 114 614 89 HOH HOH . E 5 HOH A 115 615 69 HOH HOH . E 5 HOH A 116 616 61 HOH HOH . E 5 HOH A 117 617 11 HOH HOH . E 5 HOH A 118 618 156 HOH HOH . E 5 HOH A 119 619 33 HOH HOH . E 5 HOH A 120 620 30 HOH HOH . E 5 HOH A 121 621 162 HOH HOH . E 5 HOH A 122 622 106 HOH HOH . E 5 HOH A 123 623 122 HOH HOH . E 5 HOH A 124 624 70 HOH HOH . E 5 HOH A 125 625 135 HOH HOH . E 5 HOH A 126 626 159 HOH HOH . E 5 HOH A 127 627 144 HOH HOH . E 5 HOH A 128 628 169 HOH HOH . E 5 HOH A 129 629 67 HOH HOH . E 5 HOH A 130 630 205 HOH HOH . E 5 HOH A 131 631 96 HOH HOH . E 5 HOH A 132 632 102 HOH HOH . E 5 HOH A 133 633 38 HOH HOH . E 5 HOH A 134 634 23 HOH HOH . E 5 HOH A 135 635 94 HOH HOH . E 5 HOH A 136 636 111 HOH HOH . E 5 HOH A 137 637 120 HOH HOH . E 5 HOH A 138 638 130 HOH HOH . E 5 HOH A 139 639 13 HOH HOH . E 5 HOH A 140 640 109 HOH HOH . E 5 HOH A 141 641 168 HOH HOH . E 5 HOH A 142 642 73 HOH HOH . E 5 HOH A 143 643 66 HOH HOH . E 5 HOH A 144 644 204 HOH HOH . E 5 HOH A 145 645 37 HOH HOH . E 5 HOH A 146 646 57 HOH HOH . E 5 HOH A 147 647 110 HOH HOH . E 5 HOH A 148 648 125 HOH HOH . E 5 HOH A 149 649 148 HOH HOH . E 5 HOH A 150 650 77 HOH HOH . E 5 HOH A 151 651 147 HOH HOH . E 5 HOH A 152 652 54 HOH HOH . E 5 HOH A 153 653 98 HOH HOH . E 5 HOH A 154 654 47 HOH HOH . E 5 HOH A 155 655 105 HOH HOH . E 5 HOH A 156 656 202 HOH HOH . E 5 HOH A 157 657 186 HOH HOH . E 5 HOH A 158 658 185 HOH HOH . E 5 HOH A 159 659 127 HOH HOH . E 5 HOH A 160 660 97 HOH HOH . E 5 HOH A 161 661 26 HOH HOH . E 5 HOH A 162 662 192 HOH HOH . E 5 HOH A 163 663 114 HOH HOH . E 5 HOH A 164 664 158 HOH HOH . E 5 HOH A 165 665 196 HOH HOH . E 5 HOH A 166 666 41 HOH HOH . E 5 HOH A 167 667 199 HOH HOH . E 5 HOH A 168 668 167 HOH HOH . E 5 HOH A 169 669 193 HOH HOH . E 5 HOH A 170 670 117 HOH HOH . E 5 HOH A 171 671 85 HOH HOH . E 5 HOH A 172 672 191 HOH HOH . E 5 HOH A 173 673 134 HOH HOH . E 5 HOH A 174 674 143 HOH HOH . E 5 HOH A 175 675 80 HOH HOH . E 5 HOH A 176 676 140 HOH HOH . E 5 HOH A 177 677 108 HOH HOH . E 5 HOH A 178 678 79 HOH HOH . E 5 HOH A 179 679 138 HOH HOH . E 5 HOH A 180 680 36 HOH HOH . E 5 HOH A 181 681 157 HOH HOH . E 5 HOH A 182 682 103 HOH HOH . E 5 HOH A 183 683 53 HOH HOH . E 5 HOH A 184 684 71 HOH HOH . E 5 HOH A 185 685 55 HOH HOH . E 5 HOH A 186 686 170 HOH HOH . E 5 HOH A 187 687 50 HOH HOH . E 5 HOH A 188 688 179 HOH HOH . E 5 HOH A 189 689 183 HOH HOH . E 5 HOH A 190 690 188 HOH HOH . E 5 HOH A 191 691 142 HOH HOH . E 5 HOH A 192 692 200 HOH HOH . E 5 HOH A 193 693 136 HOH HOH . E 5 HOH A 194 694 118 HOH HOH . E 5 HOH A 195 695 141 HOH HOH . E 5 HOH A 196 696 207 HOH HOH . E 5 HOH A 197 697 187 HOH HOH . E 5 HOH A 198 698 137 HOH HOH . E 5 HOH A 199 699 100 HOH HOH . E 5 HOH A 200 700 189 HOH HOH . E 5 HOH A 201 701 83 HOH HOH . E 5 HOH A 202 702 65 HOH HOH . E 5 HOH A 203 703 195 HOH HOH . E 5 HOH A 204 704 149 HOH HOH . E 5 HOH A 205 705 139 HOH HOH . E 5 HOH A 206 706 161 HOH HOH . E 5 HOH A 207 707 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB OLQ . . . C 3 17.42 13.139 19.853 0.65 27 ? CAB OLQ 402 A 1 HETATM 2 C CAC OLQ . . . C 3 17.286 14.469 20.188 0.65 32.32 ? CAC OLQ 402 A 1 HETATM 3 C CAD OLQ . . . C 3 18.313 15.343 19.952 0.65 27.62 ? CAD OLQ 402 A 1 HETATM 4 C CAE OLQ . . . C 3 19.532 14.932 19.42 0.65 25.68 ? CAE OLQ 402 A 1 HETATM 5 C CAG OLQ . . . C 3 15.953 15.012 20.718 0.65 30.79 ? CAG OLQ 402 A 1 HETATM 6 C CAI OLQ . . . C 3 18.625 12.68 19.373 0.65 29.01 ? CAI OLQ 402 A 1 HETATM 7 C CAJ OLQ . . . C 3 19.684 13.579 19.142 0.65 27.7 ? CAJ OLQ 402 A 1 HETATM 8 C CAM OLQ . . . C 3 19.922 10.981 18.471 0.65 30.67 ? CAM OLQ 402 A 1 HETATM 9 F FAF OLQ . . . C 3 16.396 12.27 20.096 0.65 26.52 ? FAF OLQ 402 A 1 HETATM 10 F FAK OLQ . . . C 3 18.044 16.615 20.277 0.65 30.25 ? FAK OLQ 402 A 1 HETATM 11 N NAA OLQ . . . C 3 14.862 14.856 19.838 0.65 15.78 ? NAA OLQ 402 A 1 HETATM 12 O OAH OLQ . . . C 3 15.788 15.574 21.737 0.65 30.15 ? OAH OLQ 402 A 1 HETATM 13 O OAL OLQ . . . C 3 18.707 11.309 19.105 0.65 28.75 ? OAL OLQ 402 A 1 HETATM 14 H HAE OLQ . . . C 3 20.217 15.539 19.256 0.65 30.81 ? HAE OLQ 402 A 1 HETATM 15 H HAJ OLQ . . . C 3 20.49 13.265 18.8 0.65 33.24 ? HAJ OLQ 402 A 1 HETATM 16 H HAO OLQ . . . C 3 19.944 10.029 18.288 0.65 36.81 ? HAO OLQ 402 A 1 HETATM 17 H HAM OLQ . . . C 3 20.663 11.216 19.052 0.65 36.81 ? HAM OLQ 402 A 1 HETATM 18 H HAN OLQ . . . C 3 19.995 11.473 17.639 0.65 36.81 ? HAN OLQ 402 A 1 HETATM 19 H HAP OLQ . . . C 3 14.973 14.451 19.091 0.65 18.94 ? HAP OLQ 402 A 1 HETATM 20 H HAA OLQ . . . C 3 14.081 15.128 20.068 0.65 18.94 ? HAA OLQ 402 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 102 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #