data_6YD1
#
_model_server_result.job_id            ll6Fu1flSPcrPwDSS4Gz8w 
_model_server_result.datetime_utc      '2025-07-14 06:30:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yd1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    6YD1 
#
_exptl.entry_id    6YD1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              39.098 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'POTASSIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.44 
_cell.angle_gamma         90 
_cell.entry_id            6YD1 
_cell.length_a            71.334 
_cell.length_b            51.139 
_cell.length_c            87.823 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YD1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 40 A GLN 48 1_555 D K K . A K 403 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.496 ? 
metalc ? metalc2 A O LEU 192 A LEU 200 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc3 A O VAL 195 A VAL 203 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc4 A OD1 ASN 200 A ASN 208 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc5 A O LEU 201 A LEU 209 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc6 C OAH OLQ . A OLQ 402 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
#
_chem_comp.formula           'K 1' 
_chem_comp.formula_weight    39.098 
_chem_comp.id                K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'POTASSIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6YD1 
_atom_sites.fract_transf_matrix[1][1]    0.014019 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005225 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019555 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012152 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 401 1 GDP GDP . 
C 3 OLQ A 1 402 1 OLQ FRA . 
D 4 K A 1 403 1 K K . 
E 5 HOH A 1 501 49 HOH HOH . 
E 5 HOH A 2 502 28 HOH HOH . 
E 5 HOH A 3 503 101 HOH HOH . 
E 5 HOH A 4 504 40 HOH HOH . 
E 5 HOH A 5 505 84 HOH HOH . 
E 5 HOH A 6 506 121 HOH HOH . 
E 5 HOH A 7 507 56 HOH HOH . 
E 5 HOH A 8 508 32 HOH HOH . 
E 5 HOH A 9 509 3 HOH HOH . 
E 5 HOH A 10 510 86 HOH HOH . 
E 5 HOH A 11 511 123 HOH HOH . 
E 5 HOH A 12 512 22 HOH HOH . 
E 5 HOH A 13 513 14 HOH HOH . 
E 5 HOH A 14 514 87 HOH HOH . 
E 5 HOH A 15 515 113 HOH HOH . 
E 5 HOH A 16 516 95 HOH HOH . 
E 5 HOH A 17 517 180 HOH HOH . 
E 5 HOH A 18 518 48 HOH HOH . 
E 5 HOH A 19 519 31 HOH HOH . 
E 5 HOH A 20 520 21 HOH HOH . 
E 5 HOH A 21 521 178 HOH HOH . 
E 5 HOH A 22 522 68 HOH HOH . 
E 5 HOH A 23 523 35 HOH HOH . 
E 5 HOH A 24 524 2 HOH HOH . 
E 5 HOH A 25 525 10 HOH HOH . 
E 5 HOH A 26 526 184 HOH HOH . 
E 5 HOH A 27 527 1 HOH HOH . 
E 5 HOH A 28 528 197 HOH HOH . 
E 5 HOH A 29 529 45 HOH HOH . 
E 5 HOH A 30 530 146 HOH HOH . 
E 5 HOH A 31 531 131 HOH HOH . 
E 5 HOH A 32 532 203 HOH HOH . 
E 5 HOH A 33 533 152 HOH HOH . 
E 5 HOH A 34 534 150 HOH HOH . 
E 5 HOH A 35 535 133 HOH HOH . 
E 5 HOH A 36 536 145 HOH HOH . 
E 5 HOH A 37 537 25 HOH HOH . 
E 5 HOH A 38 538 82 HOH HOH . 
E 5 HOH A 39 539 18 HOH HOH . 
E 5 HOH A 40 540 9 HOH HOH . 
E 5 HOH A 41 541 60 HOH HOH . 
E 5 HOH A 42 542 42 HOH HOH . 
E 5 HOH A 43 543 171 HOH HOH . 
E 5 HOH A 44 544 27 HOH HOH . 
E 5 HOH A 45 545 177 HOH HOH . 
E 5 HOH A 46 546 132 HOH HOH . 
E 5 HOH A 47 547 163 HOH HOH . 
E 5 HOH A 48 548 175 HOH HOH . 
E 5 HOH A 49 549 104 HOH HOH . 
E 5 HOH A 50 550 8 HOH HOH . 
E 5 HOH A 51 551 198 HOH HOH . 
E 5 HOH A 52 552 52 HOH HOH . 
E 5 HOH A 53 553 4 HOH HOH . 
E 5 HOH A 54 554 19 HOH HOH . 
E 5 HOH A 55 555 206 HOH HOH . 
E 5 HOH A 56 556 29 HOH HOH . 
E 5 HOH A 57 557 59 HOH HOH . 
E 5 HOH A 58 558 51 HOH HOH . 
E 5 HOH A 59 559 24 HOH HOH . 
E 5 HOH A 60 560 166 HOH HOH . 
E 5 HOH A 61 561 93 HOH HOH . 
E 5 HOH A 62 562 201 HOH HOH . 
E 5 HOH A 63 563 64 HOH HOH . 
E 5 HOH A 64 564 190 HOH HOH . 
E 5 HOH A 65 565 126 HOH HOH . 
E 5 HOH A 66 566 76 HOH HOH . 
E 5 HOH A 67 567 164 HOH HOH . 
E 5 HOH A 68 568 124 HOH HOH . 
E 5 HOH A 69 569 16 HOH HOH . 
E 5 HOH A 70 570 172 HOH HOH . 
E 5 HOH A 71 571 20 HOH HOH . 
E 5 HOH A 72 572 173 HOH HOH . 
E 5 HOH A 73 573 7 HOH HOH . 
E 5 HOH A 74 574 5 HOH HOH . 
E 5 HOH A 75 575 153 HOH HOH . 
E 5 HOH A 76 576 58 HOH HOH . 
E 5 HOH A 77 577 99 HOH HOH . 
E 5 HOH A 78 578 174 HOH HOH . 
E 5 HOH A 79 579 75 HOH HOH . 
E 5 HOH A 80 580 115 HOH HOH . 
E 5 HOH A 81 581 15 HOH HOH . 
E 5 HOH A 82 582 91 HOH HOH . 
E 5 HOH A 83 583 81 HOH HOH . 
E 5 HOH A 84 584 112 HOH HOH . 
E 5 HOH A 85 585 116 HOH HOH . 
E 5 HOH A 86 586 72 HOH HOH . 
E 5 HOH A 87 587 34 HOH HOH . 
E 5 HOH A 88 588 63 HOH HOH . 
E 5 HOH A 89 589 12 HOH HOH . 
E 5 HOH A 90 590 44 HOH HOH . 
E 5 HOH A 91 591 176 HOH HOH . 
E 5 HOH A 92 592 155 HOH HOH . 
E 5 HOH A 93 593 78 HOH HOH . 
E 5 HOH A 94 594 165 HOH HOH . 
E 5 HOH A 95 595 39 HOH HOH . 
E 5 HOH A 96 596 74 HOH HOH . 
E 5 HOH A 97 597 107 HOH HOH . 
E 5 HOH A 98 598 194 HOH HOH . 
E 5 HOH A 99 599 88 HOH HOH . 
E 5 HOH A 100 600 160 HOH HOH . 
E 5 HOH A 101 601 129 HOH HOH . 
E 5 HOH A 102 602 90 HOH HOH . 
E 5 HOH A 103 603 128 HOH HOH . 
E 5 HOH A 104 604 92 HOH HOH . 
E 5 HOH A 105 605 151 HOH HOH . 
E 5 HOH A 106 606 17 HOH HOH . 
E 5 HOH A 107 607 62 HOH HOH . 
E 5 HOH A 108 608 182 HOH HOH . 
E 5 HOH A 109 609 181 HOH HOH . 
E 5 HOH A 110 610 43 HOH HOH . 
E 5 HOH A 111 611 46 HOH HOH . 
E 5 HOH A 112 612 154 HOH HOH . 
E 5 HOH A 113 613 6 HOH HOH . 
E 5 HOH A 114 614 89 HOH HOH . 
E 5 HOH A 115 615 69 HOH HOH . 
E 5 HOH A 116 616 61 HOH HOH . 
E 5 HOH A 117 617 11 HOH HOH . 
E 5 HOH A 118 618 156 HOH HOH . 
E 5 HOH A 119 619 33 HOH HOH . 
E 5 HOH A 120 620 30 HOH HOH . 
E 5 HOH A 121 621 162 HOH HOH . 
E 5 HOH A 122 622 106 HOH HOH . 
E 5 HOH A 123 623 122 HOH HOH . 
E 5 HOH A 124 624 70 HOH HOH . 
E 5 HOH A 125 625 135 HOH HOH . 
E 5 HOH A 126 626 159 HOH HOH . 
E 5 HOH A 127 627 144 HOH HOH . 
E 5 HOH A 128 628 169 HOH HOH . 
E 5 HOH A 129 629 67 HOH HOH . 
E 5 HOH A 130 630 205 HOH HOH . 
E 5 HOH A 131 631 96 HOH HOH . 
E 5 HOH A 132 632 102 HOH HOH . 
E 5 HOH A 133 633 38 HOH HOH . 
E 5 HOH A 134 634 23 HOH HOH . 
E 5 HOH A 135 635 94 HOH HOH . 
E 5 HOH A 136 636 111 HOH HOH . 
E 5 HOH A 137 637 120 HOH HOH . 
E 5 HOH A 138 638 130 HOH HOH . 
E 5 HOH A 139 639 13 HOH HOH . 
E 5 HOH A 140 640 109 HOH HOH . 
E 5 HOH A 141 641 168 HOH HOH . 
E 5 HOH A 142 642 73 HOH HOH . 
E 5 HOH A 143 643 66 HOH HOH . 
E 5 HOH A 144 644 204 HOH HOH . 
E 5 HOH A 145 645 37 HOH HOH . 
E 5 HOH A 146 646 57 HOH HOH . 
E 5 HOH A 147 647 110 HOH HOH . 
E 5 HOH A 148 648 125 HOH HOH . 
E 5 HOH A 149 649 148 HOH HOH . 
E 5 HOH A 150 650 77 HOH HOH . 
E 5 HOH A 151 651 147 HOH HOH . 
E 5 HOH A 152 652 54 HOH HOH . 
E 5 HOH A 153 653 98 HOH HOH . 
E 5 HOH A 154 654 47 HOH HOH . 
E 5 HOH A 155 655 105 HOH HOH . 
E 5 HOH A 156 656 202 HOH HOH . 
E 5 HOH A 157 657 186 HOH HOH . 
E 5 HOH A 158 658 185 HOH HOH . 
E 5 HOH A 159 659 127 HOH HOH . 
E 5 HOH A 160 660 97 HOH HOH . 
E 5 HOH A 161 661 26 HOH HOH . 
E 5 HOH A 162 662 192 HOH HOH . 
E 5 HOH A 163 663 114 HOH HOH . 
E 5 HOH A 164 664 158 HOH HOH . 
E 5 HOH A 165 665 196 HOH HOH . 
E 5 HOH A 166 666 41 HOH HOH . 
E 5 HOH A 167 667 199 HOH HOH . 
E 5 HOH A 168 668 167 HOH HOH . 
E 5 HOH A 169 669 193 HOH HOH . 
E 5 HOH A 170 670 117 HOH HOH . 
E 5 HOH A 171 671 85 HOH HOH . 
E 5 HOH A 172 672 191 HOH HOH . 
E 5 HOH A 173 673 134 HOH HOH . 
E 5 HOH A 174 674 143 HOH HOH . 
E 5 HOH A 175 675 80 HOH HOH . 
E 5 HOH A 176 676 140 HOH HOH . 
E 5 HOH A 177 677 108 HOH HOH . 
E 5 HOH A 178 678 79 HOH HOH . 
E 5 HOH A 179 679 138 HOH HOH . 
E 5 HOH A 180 680 36 HOH HOH . 
E 5 HOH A 181 681 157 HOH HOH . 
E 5 HOH A 182 682 103 HOH HOH . 
E 5 HOH A 183 683 53 HOH HOH . 
E 5 HOH A 184 684 71 HOH HOH . 
E 5 HOH A 185 685 55 HOH HOH . 
E 5 HOH A 186 686 170 HOH HOH . 
E 5 HOH A 187 687 50 HOH HOH . 
E 5 HOH A 188 688 179 HOH HOH . 
E 5 HOH A 189 689 183 HOH HOH . 
E 5 HOH A 190 690 188 HOH HOH . 
E 5 HOH A 191 691 142 HOH HOH . 
E 5 HOH A 192 692 200 HOH HOH . 
E 5 HOH A 193 693 136 HOH HOH . 
E 5 HOH A 194 694 118 HOH HOH . 
E 5 HOH A 195 695 141 HOH HOH . 
E 5 HOH A 196 696 207 HOH HOH . 
E 5 HOH A 197 697 187 HOH HOH . 
E 5 HOH A 198 698 137 HOH HOH . 
E 5 HOH A 199 699 100 HOH HOH . 
E 5 HOH A 200 700 189 HOH HOH . 
E 5 HOH A 201 701 83 HOH HOH . 
E 5 HOH A 202 702 65 HOH HOH . 
E 5 HOH A 203 703 195 HOH HOH . 
E 5 HOH A 204 704 149 HOH HOH . 
E 5 HOH A 205 705 139 HOH HOH . 
E 5 HOH A 206 706 161 HOH HOH . 
E 5 HOH A 207 707 119 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           K 
_atom_site.label_atom_id         K 
_atom_site.label_comp_id         K 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               17.175 
_atom_site.Cartn_y               16.325 
_atom_site.Cartn_z               23.907 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        28.26 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          K 
_atom_site.auth_comp_id          K 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#