data_6YD6 # _model_server_result.job_id muml4BGKAxlTRVUzCG95jw _model_server_result.datetime_utc '2025-07-15 00:36:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yd6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6YD6 # _exptl.entry_id 6YD6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 331.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,6-bis(fluoranyl)-3-[[3-(trifluoromethyl)phenyl]methoxy]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.063 _cell.angle_gamma 90 _cell.entry_id 6YD6 _cell.length_a 71.744 _cell.length_b 50.184 _cell.length_c 88.374 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YD6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 192 A LEU 200 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc2 A O VAL 195 A VAL 203 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc3 A OD1 ASN 200 A ASN 208 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc4 A O LEU 201 A LEU 209 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc5 C O OMW . A OMW 402 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? # _chem_comp.formula 'C15 H10 F5 N O2' _chem_comp.formula_weight 331.237 _chem_comp.id OMW _chem_comp.mon_nstd_flag . _chem_comp.name 2,6-bis(fluoranyl)-3-[[3-(trifluoromethyl)phenyl]methoxy]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F2 C10 OMW sing 294 n n F4 C10 OMW sing 295 n n C10 C9 OMW sing 296 n n C10 F3 OMW sing 297 n n C11 C9 OMW doub 298 n y C11 C12 OMW sing 299 n y C9 C8 OMW sing 300 n y C12 C13 OMW doub 301 n y C8 C7 OMW doub 302 n y C13 C7 OMW sing 303 n y C7 C6 OMW sing 304 n n C6 O1 OMW sing 305 n n O1 C5 OMW sing 306 n n C4 C5 OMW doub 307 n y C4 C3 OMW sing 308 n y C5 C14 OMW sing 309 n y C3 C2 OMW doub 310 n y N C OMW sing 311 n n C14 F1 OMW sing 312 n n C14 C1 OMW doub 313 n y C2 C1 OMW sing 314 n y C2 F OMW sing 315 n n C1 C OMW sing 316 n n C O OMW doub 317 n n N H1 OMW sing 318 n n N H2 OMW sing 319 n n C11 H3 OMW sing 320 n n C12 H4 OMW sing 321 n n C13 H5 OMW sing 322 n n C3 H6 OMW sing 323 n n C4 H7 OMW sing 324 n n C6 H8 OMW sing 325 n n C6 H9 OMW sing 326 n n C8 H10 OMW sing 327 n n # _atom_sites.entry_id 6YD6 _atom_sites.fract_transf_matrix[1][1] 0.013938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005368 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 401 1 GDP GDP . C 3 OMW A 1 402 1 OMW 9PZ . D 4 K A 1 403 1 K K . E 5 MB3 A 1 404 1 MB3 MB3 . F 6 EDO A 1 405 1 EDO EDO . G 7 HOH A 1 501 194 HOH HOH . G 7 HOH A 2 502 160 HOH HOH . G 7 HOH A 3 503 46 HOH HOH . G 7 HOH A 4 504 189 HOH HOH . G 7 HOH A 5 505 121 HOH HOH . G 7 HOH A 6 506 154 HOH HOH . G 7 HOH A 7 507 153 HOH HOH . G 7 HOH A 8 508 161 HOH HOH . G 7 HOH A 9 509 190 HOH HOH . G 7 HOH A 10 510 39 HOH HOH . G 7 HOH A 11 511 129 HOH HOH . G 7 HOH A 12 512 64 HOH HOH . G 7 HOH A 13 513 38 HOH HOH . G 7 HOH A 14 514 116 HOH HOH . G 7 HOH A 15 515 8 HOH HOH . G 7 HOH A 16 516 165 HOH HOH . G 7 HOH A 17 517 71 HOH HOH . G 7 HOH A 18 518 73 HOH HOH . G 7 HOH A 19 519 114 HOH HOH . G 7 HOH A 20 520 50 HOH HOH . G 7 HOH A 21 521 27 HOH HOH . G 7 HOH A 22 522 78 HOH HOH . G 7 HOH A 23 523 56 HOH HOH . G 7 HOH A 24 524 40 HOH HOH . G 7 HOH A 25 525 104 HOH HOH . G 7 HOH A 26 526 173 HOH HOH . G 7 HOH A 27 527 23 HOH HOH . G 7 HOH A 28 528 196 HOH HOH . G 7 HOH A 29 529 85 HOH HOH . G 7 HOH A 30 530 51 HOH HOH . G 7 HOH A 31 531 3 HOH HOH . G 7 HOH A 32 532 66 HOH HOH . G 7 HOH A 33 533 186 HOH HOH . G 7 HOH A 34 534 180 HOH HOH . G 7 HOH A 35 535 107 HOH HOH . G 7 HOH A 36 536 159 HOH HOH . G 7 HOH A 37 537 144 HOH HOH . G 7 HOH A 38 538 98 HOH HOH . G 7 HOH A 39 539 5 HOH HOH . G 7 HOH A 40 540 55 HOH HOH . G 7 HOH A 41 541 67 HOH HOH . G 7 HOH A 42 542 175 HOH HOH . G 7 HOH A 43 543 79 HOH HOH . G 7 HOH A 44 544 13 HOH HOH . G 7 HOH A 45 545 36 HOH HOH . G 7 HOH A 46 546 202 HOH HOH . G 7 HOH A 47 547 2 HOH HOH . G 7 HOH A 48 548 18 HOH HOH . G 7 HOH A 49 549 111 HOH HOH . G 7 HOH A 50 550 33 HOH HOH . G 7 HOH A 51 551 82 HOH HOH . G 7 HOH A 52 552 7 HOH HOH . G 7 HOH A 53 553 195 HOH HOH . G 7 HOH A 54 554 24 HOH HOH . G 7 HOH A 55 555 76 HOH HOH . G 7 HOH A 56 556 45 HOH HOH . G 7 HOH A 57 557 146 HOH HOH . G 7 HOH A 58 558 123 HOH HOH . G 7 HOH A 59 559 119 HOH HOH . G 7 HOH A 60 560 69 HOH HOH . G 7 HOH A 61 561 63 HOH HOH . G 7 HOH A 62 562 43 HOH HOH . G 7 HOH A 63 563 28 HOH HOH . G 7 HOH A 64 564 105 HOH HOH . G 7 HOH A 65 565 172 HOH HOH . G 7 HOH A 66 566 139 HOH HOH . G 7 HOH A 67 567 25 HOH HOH . G 7 HOH A 68 568 30 HOH HOH . G 7 HOH A 69 569 184 HOH HOH . G 7 HOH A 70 570 16 HOH HOH . G 7 HOH A 71 571 88 HOH HOH . G 7 HOH A 72 572 41 HOH HOH . G 7 HOH A 73 573 53 HOH HOH . G 7 HOH A 74 574 131 HOH HOH . G 7 HOH A 75 575 37 HOH HOH . G 7 HOH A 76 576 44 HOH HOH . G 7 HOH A 77 577 21 HOH HOH . G 7 HOH A 78 578 84 HOH HOH . G 7 HOH A 79 579 100 HOH HOH . G 7 HOH A 80 580 170 HOH HOH . G 7 HOH A 81 581 59 HOH HOH . G 7 HOH A 82 582 99 HOH HOH . G 7 HOH A 83 583 128 HOH HOH . G 7 HOH A 84 584 1 HOH HOH . G 7 HOH A 85 585 4 HOH HOH . G 7 HOH A 86 586 68 HOH HOH . G 7 HOH A 87 587 22 HOH HOH . G 7 HOH A 88 588 103 HOH HOH . G 7 HOH A 89 589 198 HOH HOH . G 7 HOH A 90 590 156 HOH HOH . G 7 HOH A 91 591 49 HOH HOH . G 7 HOH A 92 592 80 HOH HOH . G 7 HOH A 93 593 141 HOH HOH . G 7 HOH A 94 594 72 HOH HOH . G 7 HOH A 95 595 174 HOH HOH . G 7 HOH A 96 596 166 HOH HOH . G 7 HOH A 97 597 113 HOH HOH . G 7 HOH A 98 598 29 HOH HOH . G 7 HOH A 99 599 12 HOH HOH . G 7 HOH A 100 600 134 HOH HOH . G 7 HOH A 101 601 110 HOH HOH . G 7 HOH A 102 602 138 HOH HOH . G 7 HOH A 103 603 108 HOH HOH . G 7 HOH A 104 604 9 HOH HOH . G 7 HOH A 105 605 97 HOH HOH . G 7 HOH A 106 606 155 HOH HOH . G 7 HOH A 107 607 199 HOH HOH . G 7 HOH A 108 608 135 HOH HOH . G 7 HOH A 109 609 96 HOH HOH . G 7 HOH A 110 610 94 HOH HOH . G 7 HOH A 111 611 61 HOH HOH . G 7 HOH A 112 612 6 HOH HOH . G 7 HOH A 113 613 132 HOH HOH . G 7 HOH A 114 614 81 HOH HOH . G 7 HOH A 115 615 75 HOH HOH . G 7 HOH A 116 616 74 HOH HOH . G 7 HOH A 117 617 60 HOH HOH . G 7 HOH A 118 618 35 HOH HOH . G 7 HOH A 119 619 19 HOH HOH . G 7 HOH A 120 620 48 HOH HOH . G 7 HOH A 121 621 32 HOH HOH . G 7 HOH A 122 622 148 HOH HOH . G 7 HOH A 123 623 130 HOH HOH . G 7 HOH A 124 624 126 HOH HOH . G 7 HOH A 125 625 187 HOH HOH . G 7 HOH A 126 626 106 HOH HOH . G 7 HOH A 127 627 120 HOH HOH . G 7 HOH A 128 628 93 HOH HOH . G 7 HOH A 129 629 112 HOH HOH . G 7 HOH A 130 630 14 HOH HOH . G 7 HOH A 131 631 62 HOH HOH . G 7 HOH A 132 632 42 HOH HOH . G 7 HOH A 133 633 10 HOH HOH . G 7 HOH A 134 634 52 HOH HOH . G 7 HOH A 135 635 95 HOH HOH . G 7 HOH A 136 636 54 HOH HOH . G 7 HOH A 137 637 83 HOH HOH . G 7 HOH A 138 638 15 HOH HOH . G 7 HOH A 139 639 11 HOH HOH . G 7 HOH A 140 640 77 HOH HOH . G 7 HOH A 141 641 34 HOH HOH . G 7 HOH A 142 642 26 HOH HOH . G 7 HOH A 143 643 92 HOH HOH . G 7 HOH A 144 644 102 HOH HOH . G 7 HOH A 145 645 31 HOH HOH . G 7 HOH A 146 646 57 HOH HOH . G 7 HOH A 147 647 47 HOH HOH . G 7 HOH A 148 648 70 HOH HOH . G 7 HOH A 149 649 65 HOH HOH . G 7 HOH A 150 650 101 HOH HOH . G 7 HOH A 151 651 157 HOH HOH . G 7 HOH A 152 652 188 HOH HOH . G 7 HOH A 153 653 149 HOH HOH . G 7 HOH A 154 654 125 HOH HOH . G 7 HOH A 155 655 133 HOH HOH . G 7 HOH A 156 656 136 HOH HOH . G 7 HOH A 157 657 109 HOH HOH . G 7 HOH A 158 658 17 HOH HOH . G 7 HOH A 159 659 179 HOH HOH . G 7 HOH A 160 660 167 HOH HOH . G 7 HOH A 161 661 181 HOH HOH . G 7 HOH A 162 662 169 HOH HOH . G 7 HOH A 163 663 87 HOH HOH . G 7 HOH A 164 664 168 HOH HOH . G 7 HOH A 165 665 117 HOH HOH . G 7 HOH A 166 666 158 HOH HOH . G 7 HOH A 167 667 20 HOH HOH . G 7 HOH A 168 668 150 HOH HOH . G 7 HOH A 169 669 90 HOH HOH . G 7 HOH A 170 670 89 HOH HOH . G 7 HOH A 171 671 200 HOH HOH . G 7 HOH A 172 672 171 HOH HOH . G 7 HOH A 173 673 176 HOH HOH . G 7 HOH A 174 674 147 HOH HOH . G 7 HOH A 175 675 177 HOH HOH . G 7 HOH A 176 676 127 HOH HOH . G 7 HOH A 177 677 201 HOH HOH . G 7 HOH A 178 678 122 HOH HOH . G 7 HOH A 179 679 193 HOH HOH . G 7 HOH A 180 680 191 HOH HOH . G 7 HOH A 181 681 182 HOH HOH . G 7 HOH A 182 682 183 HOH HOH . G 7 HOH A 183 683 124 HOH HOH . G 7 HOH A 184 684 143 HOH HOH . G 7 HOH A 185 685 192 HOH HOH . G 7 HOH A 186 686 145 HOH HOH . G 7 HOH A 187 687 178 HOH HOH . G 7 HOH A 188 688 164 HOH HOH . G 7 HOH A 189 689 151 HOH HOH . G 7 HOH A 190 690 162 HOH HOH . G 7 HOH A 191 691 118 HOH HOH . G 7 HOH A 192 692 185 HOH HOH . G 7 HOH A 193 693 115 HOH HOH . G 7 HOH A 194 694 140 HOH HOH . G 7 HOH A 195 695 137 HOH HOH . G 7 HOH A 196 696 163 HOH HOH . G 7 HOH A 197 697 58 HOH HOH . G 7 HOH A 198 698 142 HOH HOH . G 7 HOH A 199 699 86 HOH HOH . G 7 HOH A 200 700 197 HOH HOH . G 7 HOH A 201 701 91 HOH HOH . G 7 HOH A 202 702 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N OMW . . . C 3 14.302 14.716 20.197 1 22.78 ? N OMW 402 A 1 HETATM 2 C C OMW . . . C 3 15.447 14.93 21.061 1 31.08 ? C OMW 402 A 1 HETATM 3 O O OMW . . . C 3 15.345 15.518 22.082 1 30.59 ? O OMW 402 A 1 HETATM 4 C C1 OMW . . . C 3 16.804 14.407 20.584 1 24.29 ? C1 OMW 402 A 1 HETATM 5 C C10 OMW . . . C 3 21.836 6.318 18.746 1 41.49 ? C10 OMW 402 A 1 HETATM 6 C C11 OMW . . . C 3 19.284 6.509 18.849 1 35.28 ? C11 OMW 402 A 1 HETATM 7 C C12 OMW . . . C 3 18.106 7.246 18.976 1 28.52 ? C12 OMW 402 A 1 HETATM 8 C C13 OMW . . . C 3 18.197 8.629 19.145 1 31.75 ? C13 OMW 402 A 1 HETATM 9 C C14 OMW . . . C 3 16.95 13.075 20.278 1 26.32 ? C14 OMW 402 A 1 HETATM 10 C C2 OMW . . . C 3 17.866 15.282 20.433 1 26.05 ? C2 OMW 402 A 1 HETATM 11 C C3 OMW . . . C 3 19.1 14.835 19.966 1 24.49 ? C3 OMW 402 A 1 HETATM 12 C C4 OMW . . . C 3 19.261 13.485 19.669 1 24.05 ? C4 OMW 402 A 1 HETATM 13 C C5 OMW . . . C 3 18.181 12.607 19.831 1 25.25 ? C5 OMW 402 A 1 HETATM 14 C C6 OMW . . . C 3 19.57 10.762 19.35 1 29.5 ? C6 OMW 402 A 1 HETATM 15 C C7 OMW . . . C 3 19.449 9.246 19.187 1 27.95 ? C7 OMW 402 A 1 HETATM 16 C C8 OMW . . . C 3 20.62 8.5 19.054 1 31.47 ? C8 OMW 402 A 1 HETATM 17 C C9 OMW . . . C 3 20.535 7.127 18.889 1 31.54 ? C9 OMW 402 A 1 HETATM 18 F F OMW . . . C 3 17.678 16.594 20.745 1 30.91 ? F OMW 402 A 1 HETATM 19 F F1 OMW . . . C 3 15.909 12.206 20.426 1 25.9 ? F1 OMW 402 A 1 HETATM 20 F F2 OMW . . . C 3 22.638 6.919 17.808 1 39.62 ? F2 OMW 402 A 1 HETATM 21 F F3 OMW . . . C 3 22.479 6.283 19.954 1 36.85 ? F3 OMW 402 A 1 HETATM 22 F F4 OMW . . . C 3 21.574 5.045 18.336 1 34.85 ? F4 OMW 402 A 1 HETATM 23 O O1 OMW . . . C 3 18.268 11.246 19.539 1 26.18 ? O1 OMW 402 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #