data_6YDL # _model_server_result.job_id gVIgwe0xPSqOxxmSHK9eQw _model_server_result.datetime_utc '2024-12-03 01:04:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ydl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6YDL # _exptl.entry_id 6YDL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YDL _cell.length_a 53.28 _cell.length_b 54.07 _cell.length_c 81.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YDL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 8 A ASP 8 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc2 A O ASP 10 A ASP 10 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc3 A OD1 ASP 170 A ASP 170 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc4 B MG MG . A MG 301 1_555 C O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc5 B MG MG . A MG 301 1_555 C O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc6 B MG MG . A MG 301 1_555 C O HOH . A HOH 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6YDL _atom_sites.fract_transf_matrix[1][1] 0.018769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 1222 MG MG . C 3 HOH A 1 401 50 HOH HOH . C 3 HOH A 2 402 87 HOH HOH . C 3 HOH A 3 403 91 HOH HOH . C 3 HOH A 4 404 74 HOH HOH . C 3 HOH A 5 405 12 HOH HOH . C 3 HOH A 6 406 39 HOH HOH . C 3 HOH A 7 407 63 HOH HOH . C 3 HOH A 8 408 36 HOH HOH . C 3 HOH A 9 409 21 HOH HOH . C 3 HOH A 10 410 78 HOH HOH . C 3 HOH A 11 411 98 HOH HOH . C 3 HOH A 12 412 108 HOH HOH . C 3 HOH A 13 413 93 HOH HOH . C 3 HOH A 14 414 42 HOH HOH . C 3 HOH A 15 415 113 HOH HOH . C 3 HOH A 16 416 112 HOH HOH . C 3 HOH A 17 417 73 HOH HOH . C 3 HOH A 18 418 28 HOH HOH . C 3 HOH A 19 419 107 HOH HOH . C 3 HOH A 20 420 102 HOH HOH . C 3 HOH A 21 421 122 HOH HOH . C 3 HOH A 22 422 85 HOH HOH . C 3 HOH A 23 423 123 HOH HOH . C 3 HOH A 24 424 148 HOH HOH . C 3 HOH A 25 425 114 HOH HOH . C 3 HOH A 26 426 16 HOH HOH . C 3 HOH A 27 427 131 HOH HOH . C 3 HOH A 28 428 27 HOH HOH . C 3 HOH A 29 429 76 HOH HOH . C 3 HOH A 30 430 59 HOH HOH . C 3 HOH A 31 431 100 HOH HOH . C 3 HOH A 32 432 9 HOH HOH . C 3 HOH A 33 433 121 HOH HOH . C 3 HOH A 34 434 94 HOH HOH . C 3 HOH A 35 435 61 HOH HOH . C 3 HOH A 36 436 17 HOH HOH . C 3 HOH A 37 437 43 HOH HOH . C 3 HOH A 38 438 30 HOH HOH . C 3 HOH A 39 439 13 HOH HOH . C 3 HOH A 40 440 33 HOH HOH . C 3 HOH A 41 441 32 HOH HOH . C 3 HOH A 42 442 84 HOH HOH . C 3 HOH A 43 443 70 HOH HOH . C 3 HOH A 44 444 72 HOH HOH . C 3 HOH A 45 445 68 HOH HOH . C 3 HOH A 46 446 26 HOH HOH . C 3 HOH A 47 447 10 HOH HOH . C 3 HOH A 48 448 34 HOH HOH . C 3 HOH A 49 449 29 HOH HOH . C 3 HOH A 50 450 5 HOH HOH . C 3 HOH A 51 451 22 HOH HOH . C 3 HOH A 52 452 92 HOH HOH . C 3 HOH A 53 453 37 HOH HOH . C 3 HOH A 54 454 3 HOH HOH . C 3 HOH A 55 455 7 HOH HOH . C 3 HOH A 56 456 96 HOH HOH . C 3 HOH A 57 457 69 HOH HOH . C 3 HOH A 58 458 11 HOH HOH . C 3 HOH A 59 459 115 HOH HOH . C 3 HOH A 60 460 41 HOH HOH . C 3 HOH A 61 461 6 HOH HOH . C 3 HOH A 62 462 82 HOH HOH . C 3 HOH A 63 463 2 HOH HOH . C 3 HOH A 64 464 133 HOH HOH . C 3 HOH A 65 465 145 HOH HOH . C 3 HOH A 66 466 71 HOH HOH . C 3 HOH A 67 467 144 HOH HOH . C 3 HOH A 68 468 129 HOH HOH . C 3 HOH A 69 469 18 HOH HOH . C 3 HOH A 70 470 49 HOH HOH . C 3 HOH A 71 471 19 HOH HOH . C 3 HOH A 72 472 109 HOH HOH . C 3 HOH A 73 473 147 HOH HOH . C 3 HOH A 74 474 51 HOH HOH . C 3 HOH A 75 475 35 HOH HOH . C 3 HOH A 76 476 97 HOH HOH . C 3 HOH A 77 477 24 HOH HOH . C 3 HOH A 78 478 64 HOH HOH . C 3 HOH A 79 479 126 HOH HOH . C 3 HOH A 80 480 4 HOH HOH . C 3 HOH A 81 481 31 HOH HOH . C 3 HOH A 82 482 106 HOH HOH . C 3 HOH A 83 483 58 HOH HOH . C 3 HOH A 84 484 86 HOH HOH . C 3 HOH A 85 485 46 HOH HOH . C 3 HOH A 86 486 8 HOH HOH . C 3 HOH A 87 487 89 HOH HOH . C 3 HOH A 88 488 79 HOH HOH . C 3 HOH A 89 489 45 HOH HOH . C 3 HOH A 90 490 81 HOH HOH . C 3 HOH A 91 491 120 HOH HOH . C 3 HOH A 92 492 25 HOH HOH . C 3 HOH A 93 493 53 HOH HOH . C 3 HOH A 94 494 80 HOH HOH . C 3 HOH A 95 495 52 HOH HOH . C 3 HOH A 96 496 1 HOH HOH . C 3 HOH A 97 497 62 HOH HOH . C 3 HOH A 98 498 83 HOH HOH . C 3 HOH A 99 499 60 HOH HOH . C 3 HOH A 100 500 77 HOH HOH . C 3 HOH A 101 501 15 HOH HOH . C 3 HOH A 102 502 95 HOH HOH . C 3 HOH A 103 503 116 HOH HOH . C 3 HOH A 104 504 48 HOH HOH . C 3 HOH A 105 505 88 HOH HOH . C 3 HOH A 106 506 99 HOH HOH . C 3 HOH A 107 507 101 HOH HOH . C 3 HOH A 108 508 117 HOH HOH . C 3 HOH A 109 509 56 HOH HOH . C 3 HOH A 110 510 136 HOH HOH . C 3 HOH A 111 511 44 HOH HOH . C 3 HOH A 112 512 20 HOH HOH . C 3 HOH A 113 513 38 HOH HOH . C 3 HOH A 114 514 54 HOH HOH . C 3 HOH A 115 515 134 HOH HOH . C 3 HOH A 116 516 55 HOH HOH . C 3 HOH A 117 517 90 HOH HOH . C 3 HOH A 118 518 103 HOH HOH . C 3 HOH A 119 519 146 HOH HOH . C 3 HOH A 120 520 111 HOH HOH . C 3 HOH A 121 521 125 HOH HOH . C 3 HOH A 122 522 104 HOH HOH . C 3 HOH A 123 523 14 HOH HOH . C 3 HOH A 124 524 40 HOH HOH . C 3 HOH A 125 525 130 HOH HOH . C 3 HOH A 126 526 143 HOH HOH . C 3 HOH A 127 527 119 HOH HOH . C 3 HOH A 128 528 118 HOH HOH . C 3 HOH A 129 529 128 HOH HOH . C 3 HOH A 130 530 127 HOH HOH . C 3 HOH A 131 531 138 HOH HOH . C 3 HOH A 132 532 141 HOH HOH . C 3 HOH A 133 533 140 HOH HOH . C 3 HOH A 134 534 132 HOH HOH . C 3 HOH A 135 535 137 HOH HOH . C 3 HOH A 136 536 142 HOH HOH . C 3 HOH A 137 537 75 HOH HOH . C 3 HOH A 138 538 105 HOH HOH . C 3 HOH A 139 539 124 HOH HOH . C 3 HOH A 140 540 135 HOH HOH . C 3 HOH A 141 541 23 HOH HOH . C 3 HOH A 142 542 67 HOH HOH . C 3 HOH A 143 543 47 HOH HOH . C 3 HOH A 144 544 65 HOH HOH . C 3 HOH A 145 545 57 HOH HOH . C 3 HOH A 146 546 110 HOH HOH . C 3 HOH A 147 547 66 HOH HOH . C 3 HOH A 148 548 139 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -10.658 _atom_site.Cartn_y -13.228 _atom_site.Cartn_z 8.223 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #