data_6YE4 # _model_server_result.job_id XhpfKmLMSouvAqXzjvW5HA _model_server_result.datetime_utc '2025-03-06 09:39:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ye4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 6YE4 # _exptl.entry_id 6YE4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 751.023 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YE4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C40 H79 O10 P' _chem_comp.formula_weight 751.023 _chem_comp.id PGT _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 PGT sing 222 n n C48 H481 PGT sing 223 n n C48 H482 PGT sing 224 n n C48 H483 PGT sing 225 n n C47 C46 PGT sing 226 n n C47 H471 PGT sing 227 n n C47 H472 PGT sing 228 n n C46 C45 PGT sing 229 n n C46 H461 PGT sing 230 n n C46 H462 PGT sing 231 n n C45 C44 PGT sing 232 n n C45 H451 PGT sing 233 n n C45 H452 PGT sing 234 n n C44 C43 PGT sing 235 n n C44 H441 PGT sing 236 n n C44 H442 PGT sing 237 n n C43 C42 PGT sing 238 n n C43 H431 PGT sing 239 n n C43 H432 PGT sing 240 n n C42 C41 PGT sing 241 n n C42 H421 PGT sing 242 n n C42 H422 PGT sing 243 n n C41 C40 PGT sing 244 n n C41 H411 PGT sing 245 n n C41 H412 PGT sing 246 n n C40 C39 PGT sing 247 n n C40 H401 PGT sing 248 n n C40 H402 PGT sing 249 n n C39 C38 PGT sing 250 n n C39 H391 PGT sing 251 n n C39 H392 PGT sing 252 n n C38 C37 PGT sing 253 n n C38 H381 PGT sing 254 n n C38 H382 PGT sing 255 n n C37 C36 PGT sing 256 n n C37 H371 PGT sing 257 n n C37 H372 PGT sing 258 n n C36 C35 PGT sing 259 n n C36 H361 PGT sing 260 n n C36 H362 PGT sing 261 n n C35 C34 PGT sing 262 n n C35 H351 PGT sing 263 n n C35 H352 PGT sing 264 n n C34 C33 PGT sing 265 n n C34 H341 PGT sing 266 n n C34 H342 PGT sing 267 n n C33 C32 PGT sing 268 n n C33 H331 PGT sing 269 n n C33 H332 PGT sing 270 n n C32 C31 PGT sing 271 n n C32 H321 PGT sing 272 n n C32 H322 PGT sing 273 n n C31 O31 PGT doub 274 n n C31 O2 PGT sing 275 n n O2 C2 PGT sing 276 n n C2 C1 PGT sing 277 n n C2 C3 PGT sing 278 n n C2 H2 PGT sing 279 n n C1 O3P PGT sing 280 n n C1 H11 PGT sing 281 n n C1 H12 PGT sing 282 n n O3P P PGT sing 283 n n P O1P PGT doub 284 n n P O2P PGT sing 285 n n P O4P PGT sing 286 n n O2P HO2P PGT sing 287 n n O4P C4 PGT sing 288 n n C4 C5 PGT sing 289 n n C4 H41 PGT sing 290 n n C4 H42 PGT sing 291 n n C5 O5 PGT sing 292 n n C5 C6 PGT sing 293 n n C5 H5 PGT sing 294 n n O5 HO5 PGT sing 295 n n C6 O6 PGT sing 296 n n C6 H61 PGT sing 297 n n C6 H62 PGT sing 298 n n O6 HO6 PGT sing 299 n n C3 O3 PGT sing 300 n n C3 H31 PGT sing 301 n n C3 H32 PGT sing 302 n n O3 C11 PGT sing 303 n n C11 O11 PGT doub 304 n n C11 C12 PGT sing 305 n n C12 C13 PGT sing 306 n n C12 H121 PGT sing 307 n n C12 H122 PGT sing 308 n n C13 C14 PGT sing 309 n n C13 H131 PGT sing 310 n n C13 H132 PGT sing 311 n n C14 C15 PGT sing 312 n n C14 H141 PGT sing 313 n n C14 H142 PGT sing 314 n n C15 C16 PGT sing 315 n n C15 H151 PGT sing 316 n n C15 H152 PGT sing 317 n n C16 C17 PGT sing 318 n n C16 H161 PGT sing 319 n n C16 H162 PGT sing 320 n n C17 C18 PGT sing 321 n n C17 H171 PGT sing 322 n n C17 H172 PGT sing 323 n n C18 C19 PGT sing 324 n n C18 H181 PGT sing 325 n n C18 H182 PGT sing 326 n n C19 C20 PGT sing 327 n n C19 H191 PGT sing 328 n n C19 H192 PGT sing 329 n n C20 C21 PGT sing 330 n n C20 H201 PGT sing 331 n n C20 H202 PGT sing 332 n n C21 C22 PGT sing 333 n n C21 H211 PGT sing 334 n n C21 H212 PGT sing 335 n n C22 C23 PGT sing 336 n n C22 H221 PGT sing 337 n n C22 H222 PGT sing 338 n n C23 C24 PGT sing 339 n n C23 H231 PGT sing 340 n n C23 H232 PGT sing 341 n n C24 C25 PGT sing 342 n n C24 H241 PGT sing 343 n n C24 H242 PGT sing 344 n n C25 C26 PGT sing 345 n n C25 H251 PGT sing 346 n n C25 H252 PGT sing 347 n n C26 H261 PGT sing 348 n n C26 H262 PGT sing 349 n n C26 H263 PGT sing 350 n n # _atom_sites.entry_id 6YE4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PGT A 1 301 301 PGT PGT . G 2 PGT B 1 301 301 PGT PGT . H 2 PGT C 1 301 301 PGT PGT . I 2 PGT D 1 301 301 PGT PGT . J 2 PGT E 1 301 301 PGT PGT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C43 PGT . . . I 2 160.01 134.595 160.835 1 45.43 ? C43 PGT 301 D 1 HETATM 2 C C42 PGT . . . I 2 159.775 133.463 159.857 1 45.43 ? C42 PGT 301 D 1 HETATM 3 C C41 PGT . . . I 2 159.996 134.047 158.489 1 45.43 ? C41 PGT 301 D 1 HETATM 4 C C40 PGT . . . I 2 159.546 133.042 157.46 1 45.43 ? C40 PGT 301 D 1 HETATM 5 C C39 PGT . . . I 2 159.456 133.83 156.184 1 45.43 ? C39 PGT 301 D 1 HETATM 6 C C38 PGT . . . I 2 158.441 133.112 155.364 1 45.43 ? C38 PGT 301 D 1 HETATM 7 C C37 PGT . . . I 2 157.908 134.081 154.341 1 45.43 ? C37 PGT 301 D 1 HETATM 8 C C36 PGT . . . I 2 158.746 134.261 153.091 1 45.43 ? C36 PGT 301 D 1 HETATM 9 C C35 PGT . . . I 2 159.048 132.884 152.556 1 45.43 ? C35 PGT 301 D 1 HETATM 10 C C34 PGT . . . I 2 159.455 133.045 151.118 1 45.43 ? C34 PGT 301 D 1 HETATM 11 C C33 PGT . . . I 2 160.294 131.883 150.638 1 45.43 ? C33 PGT 301 D 1 HETATM 12 C C32 PGT . . . I 2 159.612 130.544 150.766 1 45.43 ? C32 PGT 301 D 1 HETATM 13 C C31 PGT . . . I 2 158.777 130.287 149.543 1 45.43 ? C31 PGT 301 D 1 HETATM 14 O O31 PGT . . . I 2 157.712 129.866 149.737 1 45.43 ? O31 PGT 301 D 1 HETATM 15 O O2 PGT . . . I 2 159.172 130.562 148.223 1 45.43 ? O2 PGT 301 D 1 HETATM 16 C C2 PGT . . . I 2 159.877 129.614 147.444 1 45.43 ? C2 PGT 301 D 1 HETATM 17 C C1 PGT . . . I 2 160.393 130.329 146.197 1 45.43 ? C1 PGT 301 D 1 HETATM 18 O O3P PGT . . . I 2 160.154 129.597 145.03 1 45.43 ? O3P PGT 301 D 1 HETATM 19 P P PGT . . . I 2 161.208 129.736 143.763 1 45.43 ? P PGT 301 D 1 HETATM 20 O O1P PGT . . . I 2 161.935 131.049 143.894 1 45.43 ? O1P PGT 301 D 1 HETATM 21 O O2P PGT . . . I 2 160.443 129.777 142.466 1 45.43 ? O2P PGT 301 D 1 HETATM 22 O O4P PGT . . . I 2 162.257 128.456 143.688 1 45.43 ? O4P PGT 301 D 1 HETATM 23 C C4 PGT . . . I 2 163.582 128.547 144.15 1 45.43 ? C4 PGT 301 D 1 HETATM 24 C C5 PGT . . . I 2 163.784 127.765 145.441 1 45.43 ? C5 PGT 301 D 1 HETATM 25 O O5 PGT . . . I 2 162.813 126.773 145.484 1 45.43 ? O5 PGT 301 D 1 HETATM 26 C C6 PGT . . . I 2 163.66 128.653 146.674 1 45.43 ? C6 PGT 301 D 1 HETATM 27 O O6 PGT . . . I 2 163.12 127.912 147.727 1 45.43 ? O6 PGT 301 D 1 HETATM 28 C C3 PGT . . . I 2 159.071 128.362 147.053 1 45.43 ? C3 PGT 301 D 1 HETATM 29 O O3 PGT . . . I 2 158.928 127.576 148.206 1 45.43 ? O3 PGT 301 D 1 HETATM 30 C C11 PGT . . . I 2 158.095 126.463 148.153 1 45.43 ? C11 PGT 301 D 1 HETATM 31 O O11 PGT . . . I 2 158.056 125.755 147.213 1 45.43 ? O11 PGT 301 D 1 HETATM 32 C C12 PGT . . . I 2 157.13 126.313 149.313 1 45.43 ? C12 PGT 301 D 1 HETATM 33 C C13 PGT . . . I 2 157.805 125.954 150.615 1 45.43 ? C13 PGT 301 D 1 HETATM 34 C C14 PGT . . . I 2 156.87 126.485 151.683 1 45.43 ? C14 PGT 301 D 1 HETATM 35 C C15 PGT . . . I 2 156.927 125.62 152.921 1 45.43 ? C15 PGT 301 D 1 HETATM 36 C C16 PGT . . . I 2 156.218 126.292 154.088 1 45.43 ? C16 PGT 301 D 1 HETATM 37 C C17 PGT . . . I 2 155.809 125.194 155.043 1 45.43 ? C17 PGT 301 D 1 HETATM 38 C C18 PGT . . . I 2 155.604 125.701 156.46 1 45.43 ? C18 PGT 301 D 1 HETATM 39 C C19 PGT . . . I 2 154.81 126.973 156.576 1 45.43 ? C19 PGT 301 D 1 HETATM 40 C C20 PGT . . . I 2 154.635 127.233 158.058 1 45.43 ? C20 PGT 301 D 1 HETATM 41 C C21 PGT . . . I 2 154.033 128.616 158.152 1 45.43 ? C21 PGT 301 D 1 HETATM 42 C C22 PGT . . . I 2 153.611 129.022 159.55 1 45.43 ? C22 PGT 301 D 1 HETATM 43 C C23 PGT . . . I 2 154.791 129.062 160.476 1 45.43 ? C23 PGT 301 D 1 HETATM 44 C C24 PGT . . . I 2 154.298 129.622 161.798 1 45.43 ? C24 PGT 301 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #