data_6YEC # _model_server_result.job_id PH30kLYG4yF4WB38YWc0AA _model_server_result.datetime_utc '2024-12-28 16:52:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":415}' # _entry.id 6YEC # _exptl.entry_id 6YEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6YEC _cell.length_a 70.401 _cell.length_b 70.401 _cell.length_c 273.497 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,LA 1 1 B,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,MA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 X N N ? 3 Y N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 149 B CYS 175 1_555 A SG CYS 213 B CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 149 A CYS 175 1_555 B SG CYS 213 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B OD2 ASP 13 A ASP 39 1_555 V N1 SPM . A SPM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6YEC _atom_sites.fract_transf_matrix[1][1] 0.014204 _atom_sites.fract_transf_matrix[1][2] 0.008201 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPM B 1 501 501 SPM SPM . D 3 EDO B 1 502 701 EDO EDO . E 3 EDO B 1 503 801 EDO EDO . F 3 EDO B 1 504 901 EDO EDO . G 3 EDO B 1 505 1001 EDO EDO . H 3 EDO B 1 506 1101 EDO EDO . I 4 PEG B 1 507 1301 PEG PEG . J 5 PGE B 1 508 1401 PGE PGE . K 6 SO4 B 1 509 1 SO4 SO4 . L 6 SO4 B 1 510 4 SO4 SO4 . M 6 SO4 B 1 511 5 SO4 SO4 . N 7 CL B 1 512 2 CL CL . O 7 CL B 1 513 4 CL CL . P 7 CL B 1 514 6 CL CL . Q 7 CL B 1 515 7 CL CL . R 3 EDO B 1 516 1 EDO EDO . S 3 EDO B 1 517 3 EDO EDO . T 3 EDO B 1 518 4 EDO EDO . U 3 EDO B 1 519 6 EDO EDO . V 2 SPM A 1 401 401 SPM SPM . W 8 GOL A 1 402 601 GOL GOL . X 3 EDO A 1 403 701 EDO EDO . Y 3 EDO A 1 404 801 EDO EDO . Z 9 PG4 A 1 405 1101 PG4 PG4 . AA 5 PGE A 1 406 1201 PGE PGE . BA 4 PEG A 1 407 1301 PEG PEG . CA 6 SO4 A 1 408 3 SO4 SO4 . DA 6 SO4 A 1 409 6 SO4 SO4 . EA 7 CL A 1 410 3 CL CL . FA 7 CL A 1 411 9 CL CL . GA 7 CL A 1 412 10 CL CL . HA 3 EDO A 1 413 2 EDO EDO . IA 3 EDO A 1 414 5 EDO EDO . JA 3 EDO A 1 415 8 EDO EDO . KA 3 EDO A 1 416 9 EDO EDO . LA 10 HOH B 1 601 45 HOH HOH . LA 10 HOH B 2 602 131 HOH HOH . LA 10 HOH B 3 603 62 HOH HOH . LA 10 HOH B 4 604 81 HOH HOH . LA 10 HOH B 5 605 36 HOH HOH . LA 10 HOH B 6 606 25 HOH HOH . LA 10 HOH B 7 607 13 HOH HOH . LA 10 HOH B 8 608 74 HOH HOH . LA 10 HOH B 9 609 32 HOH HOH . LA 10 HOH B 10 610 4 HOH HOH . LA 10 HOH B 11 611 66 HOH HOH . LA 10 HOH B 12 612 17 HOH HOH . LA 10 HOH B 13 613 20 HOH HOH . LA 10 HOH B 14 614 28 HOH HOH . LA 10 HOH B 15 615 86 HOH HOH . LA 10 HOH B 16 616 64 HOH HOH . LA 10 HOH B 17 617 24 HOH HOH . LA 10 HOH B 18 618 39 HOH HOH . LA 10 HOH B 19 619 73 HOH HOH . LA 10 HOH B 20 620 30 HOH HOH . LA 10 HOH B 21 621 5 HOH HOH . LA 10 HOH B 22 622 78 HOH HOH . LA 10 HOH B 23 623 2 HOH HOH . LA 10 HOH B 24 624 35 HOH HOH . LA 10 HOH B 25 625 95 HOH HOH . LA 10 HOH B 26 626 51 HOH HOH . LA 10 HOH B 27 627 55 HOH HOH . LA 10 HOH B 28 628 93 HOH HOH . LA 10 HOH B 29 629 129 HOH HOH . LA 10 HOH B 30 630 33 HOH HOH . LA 10 HOH B 31 631 41 HOH HOH . LA 10 HOH B 32 632 91 HOH HOH . LA 10 HOH B 33 633 63 HOH HOH . LA 10 HOH B 34 634 84 HOH HOH . LA 10 HOH B 35 635 6 HOH HOH . LA 10 HOH B 36 636 31 HOH HOH . LA 10 HOH B 37 637 1 HOH HOH . LA 10 HOH B 38 638 60 HOH HOH . LA 10 HOH B 39 639 61 HOH HOH . LA 10 HOH B 40 640 26 HOH HOH . LA 10 HOH B 41 641 103 HOH HOH . LA 10 HOH B 42 642 58 HOH HOH . LA 10 HOH B 43 643 40 HOH HOH . LA 10 HOH B 44 644 99 HOH HOH . LA 10 HOH B 45 645 79 HOH HOH . LA 10 HOH B 46 646 27 HOH HOH . LA 10 HOH B 47 647 83 HOH HOH . LA 10 HOH B 48 648 70 HOH HOH . LA 10 HOH B 49 649 14 HOH HOH . LA 10 HOH B 50 650 19 HOH HOH . LA 10 HOH B 51 651 132 HOH HOH . LA 10 HOH B 52 652 75 HOH HOH . LA 10 HOH B 53 653 76 HOH HOH . LA 10 HOH B 54 654 127 HOH HOH . LA 10 HOH B 55 655 57 HOH HOH . LA 10 HOH B 56 656 92 HOH HOH . LA 10 HOH B 57 657 85 HOH HOH . LA 10 HOH B 58 658 128 HOH HOH . LA 10 HOH B 59 659 139 HOH HOH . LA 10 HOH B 60 660 87 HOH HOH . LA 10 HOH B 61 661 101 HOH HOH . LA 10 HOH B 62 662 122 HOH HOH . LA 10 HOH B 63 663 130 HOH HOH . LA 10 HOH B 64 664 96 HOH HOH . LA 10 HOH B 65 665 118 HOH HOH . LA 10 HOH B 66 666 121 HOH HOH . LA 10 HOH B 67 667 123 HOH HOH . LA 10 HOH B 68 668 119 HOH HOH . LA 10 HOH B 69 669 97 HOH HOH . LA 10 HOH B 70 670 94 HOH HOH . MA 10 HOH A 1 501 89 HOH HOH . MA 10 HOH A 2 502 9 HOH HOH . MA 10 HOH A 3 503 10 HOH HOH . MA 10 HOH A 4 504 8 HOH HOH . MA 10 HOH A 5 505 34 HOH HOH . MA 10 HOH A 6 506 42 HOH HOH . MA 10 HOH A 7 507 80 HOH HOH . MA 10 HOH A 8 508 43 HOH HOH . MA 10 HOH A 9 509 11 HOH HOH . MA 10 HOH A 10 510 7 HOH HOH . MA 10 HOH A 11 511 21 HOH HOH . MA 10 HOH A 12 512 52 HOH HOH . MA 10 HOH A 13 513 3 HOH HOH . MA 10 HOH A 14 514 65 HOH HOH . MA 10 HOH A 15 515 15 HOH HOH . MA 10 HOH A 16 516 54 HOH HOH . MA 10 HOH A 17 517 18 HOH HOH . MA 10 HOH A 18 518 16 HOH HOH . MA 10 HOH A 19 519 23 HOH HOH . MA 10 HOH A 20 520 56 HOH HOH . MA 10 HOH A 21 521 29 HOH HOH . MA 10 HOH A 22 522 49 HOH HOH . MA 10 HOH A 23 523 59 HOH HOH . MA 10 HOH A 24 524 53 HOH HOH . MA 10 HOH A 25 525 68 HOH HOH . MA 10 HOH A 26 526 12 HOH HOH . MA 10 HOH A 27 527 136 HOH HOH . MA 10 HOH A 28 528 112 HOH HOH . MA 10 HOH A 29 529 90 HOH HOH . MA 10 HOH A 30 530 135 HOH HOH . MA 10 HOH A 31 531 72 HOH HOH . MA 10 HOH A 32 532 100 HOH HOH . MA 10 HOH A 33 533 141 HOH HOH . MA 10 HOH A 34 534 102 HOH HOH . MA 10 HOH A 35 535 67 HOH HOH . MA 10 HOH A 36 536 108 HOH HOH . MA 10 HOH A 37 537 117 HOH HOH . MA 10 HOH A 38 538 106 HOH HOH . MA 10 HOH A 39 539 134 HOH HOH . MA 10 HOH A 40 540 116 HOH HOH . MA 10 HOH A 41 541 69 HOH HOH . MA 10 HOH A 42 542 105 HOH HOH . MA 10 HOH A 43 543 82 HOH HOH . MA 10 HOH A 44 544 38 HOH HOH . MA 10 HOH A 45 545 115 HOH HOH . MA 10 HOH A 46 546 37 HOH HOH . MA 10 HOH A 47 547 140 HOH HOH . MA 10 HOH A 48 548 77 HOH HOH . MA 10 HOH A 49 549 125 HOH HOH . MA 10 HOH A 50 550 48 HOH HOH . MA 10 HOH A 51 551 107 HOH HOH . MA 10 HOH A 52 552 124 HOH HOH . MA 10 HOH A 53 553 142 HOH HOH . MA 10 HOH A 54 554 98 HOH HOH . MA 10 HOH A 55 555 22 HOH HOH . MA 10 HOH A 56 556 110 HOH HOH . MA 10 HOH A 57 557 109 HOH HOH . MA 10 HOH A 58 558 44 HOH HOH . MA 10 HOH A 59 559 143 HOH HOH . MA 10 HOH A 60 560 133 HOH HOH . MA 10 HOH A 61 561 120 HOH HOH . MA 10 HOH A 62 562 46 HOH HOH . MA 10 HOH A 63 563 88 HOH HOH . MA 10 HOH A 64 564 104 HOH HOH . MA 10 HOH A 65 565 71 HOH HOH . MA 10 HOH A 66 566 113 HOH HOH . MA 10 HOH A 67 567 138 HOH HOH . MA 10 HOH A 68 568 126 HOH HOH . MA 10 HOH A 69 569 114 HOH HOH . MA 10 HOH A 70 570 111 HOH HOH . MA 10 HOH A 71 571 47 HOH HOH . MA 10 HOH A 72 572 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . JA 3 0.704 27.742 -85.484 1 86.17 ? C1 EDO 415 A 1 HETATM 2 O O1 EDO . . . JA 3 -0.54 27.359 -84.885 1 83.24 ? O1 EDO 415 A 1 HETATM 3 C C2 EDO . . . JA 3 1.86 27.117 -84.71 1 85.66 ? C2 EDO 415 A 1 HETATM 4 O O2 EDO . . . JA 3 1.759 25.689 -84.764 1 83.99 ? O2 EDO 415 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #