data_6YEH # _model_server_result.job_id JKCu-hW5G_CzXS-EANIOWw _model_server_result.datetime_utc '2024-11-08 10:02:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yeh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":505}' # _entry.id 6YEH # _exptl.entry_id 6YEH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YEH _cell.length_a 93.57 _cell.length_b 99.169 _cell.length_c 318.084 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YEH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 N N N ? 3 Q N N ? 3 T N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 30 A SER 27 1_555 K K K . A K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc2 A O ILE 33 A ILE 30 1_555 K K K . A K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc3 A OE2 GLU 41 A GLU 38 1_555 L K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc4 K K K . A K 505 1_555 B OE2 GLU 41 B GLU 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc5 L K K . A K 506 1_555 B O SER 30 B SER 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc6 L K K . A K 506 1_555 B O ILE 33 B ILE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc7 C O SER 30 C SER 27 1_555 N K K . C K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc8 C O ILE 33 C ILE 30 1_555 N K K . C K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc9 C OE2 GLU 41 C GLU 38 1_555 Q K K . D K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc10 N K K . C K 501 1_555 Z O HOH . C HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.358 ? metalc ? metalc11 N K K . C K 501 1_555 D OE2 GLU 41 D GLU 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc12 D O SER 30 D SER 27 1_555 Q K K . D K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc13 D O ILE 33 D ILE 30 1_555 Q K K . D K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc14 E O SER 30 E SER 27 1_555 T K K . E K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc15 E O ILE 33 E ILE 30 1_555 T K K . E K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc16 E OE1 GLU 41 E GLU 38 1_555 W K K . E K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.473 ? metalc ? metalc17 E OE2 GLU 41 E GLU 38 1_555 W K K . E K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc18 T K K . E K 502 1_555 F OE2 GLU 41 F GLU 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc19 W K K . E K 505 1_555 F O SER 30 F SER 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc20 W K K . E K 505 1_555 F O ILE 33 F ILE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6YEH _atom_sites.fract_transf_matrix[1][1] 0.010687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MPD A 1 501 412 MPD MPD . H 2 MPD A 1 502 413 MPD MPD . I 2 MPD A 1 503 414 MPD MPD . J 2 MPD A 1 504 415 MPD MPD . K 3 K A 1 505 501 K K . L 3 K A 1 506 501 K K . M 2 MPD B 1 501 414 MPD MPD . N 3 K C 1 501 412 K K . O 2 MPD C 1 502 413 MPD MPD . P 2 MPD C 1 503 414 MPD MPD . Q 3 K D 1 501 412 K K . R 2 MPD D 1 502 413 MPD MPD . S 2 MPD E 1 501 412 MPD MPD . T 3 K E 1 502 413 K K . U 2 MPD E 1 503 414 MPD MPD . V 2 MPD E 1 504 415 MPD MPD . W 3 K E 1 505 501 K K . X 4 HOH A 1 601 427 HOH HOH . X 4 HOH A 2 602 423 HOH HOH . X 4 HOH A 3 603 434 HOH HOH . X 4 HOH A 4 604 432 HOH HOH . X 4 HOH A 5 605 417 HOH HOH . X 4 HOH A 6 606 433 HOH HOH . X 4 HOH A 7 607 416 HOH HOH . X 4 HOH A 8 608 422 HOH HOH . X 4 HOH A 9 609 438 HOH HOH . X 4 HOH A 10 610 439 HOH HOH . X 4 HOH A 11 611 420 HOH HOH . X 4 HOH A 12 612 418 HOH HOH . X 4 HOH A 13 613 424 HOH HOH . X 4 HOH A 14 614 444 HOH HOH . X 4 HOH A 15 615 435 HOH HOH . X 4 HOH A 16 616 446 HOH HOH . X 4 HOH A 17 617 437 HOH HOH . X 4 HOH A 18 618 430 HOH HOH . X 4 HOH A 19 619 447 HOH HOH . X 4 HOH A 20 620 442 HOH HOH . X 4 HOH A 21 621 441 HOH HOH . X 4 HOH A 22 622 440 HOH HOH . X 4 HOH A 23 623 431 HOH HOH . X 4 HOH A 24 624 426 HOH HOH . X 4 HOH A 25 625 429 HOH HOH . X 4 HOH A 26 626 419 HOH HOH . X 4 HOH A 27 627 443 HOH HOH . X 4 HOH A 28 628 428 HOH HOH . X 4 HOH A 29 629 445 HOH HOH . X 4 HOH A 30 630 425 HOH HOH . Y 4 HOH B 1 601 426 HOH HOH . Y 4 HOH B 2 602 437 HOH HOH . Y 4 HOH B 3 603 439 HOH HOH . Y 4 HOH B 4 604 424 HOH HOH . Y 4 HOH B 5 605 419 HOH HOH . Y 4 HOH B 6 606 418 HOH HOH . Y 4 HOH B 7 607 429 HOH HOH . Y 4 HOH B 8 608 416 HOH HOH . Y 4 HOH B 9 609 422 HOH HOH . Y 4 HOH B 10 610 428 HOH HOH . Y 4 HOH B 11 611 433 HOH HOH . Y 4 HOH B 12 612 431 HOH HOH . Y 4 HOH B 13 613 434 HOH HOH . Y 4 HOH B 14 614 415 HOH HOH . Y 4 HOH B 15 615 420 HOH HOH . Y 4 HOH B 16 616 435 HOH HOH . Y 4 HOH B 17 617 421 HOH HOH . Y 4 HOH B 18 618 425 HOH HOH . Y 4 HOH B 19 619 427 HOH HOH . Y 4 HOH B 20 620 416 HOH HOH . Y 4 HOH B 21 621 430 HOH HOH . Y 4 HOH B 22 622 438 HOH HOH . Y 4 HOH B 23 623 423 HOH HOH . Y 4 HOH B 24 624 436 HOH HOH . Y 4 HOH B 25 625 417 HOH HOH . Z 4 HOH C 1 601 434 HOH HOH . Z 4 HOH C 2 602 415 HOH HOH . Z 4 HOH C 3 603 436 HOH HOH . Z 4 HOH C 4 604 420 HOH HOH . Z 4 HOH C 5 605 422 HOH HOH . Z 4 HOH C 6 606 421 HOH HOH . Z 4 HOH C 7 607 436 HOH HOH . Z 4 HOH C 8 608 418 HOH HOH . Z 4 HOH C 9 609 431 HOH HOH . Z 4 HOH C 10 610 427 HOH HOH . Z 4 HOH C 11 611 428 HOH HOH . Z 4 HOH C 12 612 435 HOH HOH . Z 4 HOH C 13 613 419 HOH HOH . Z 4 HOH C 14 614 429 HOH HOH . Z 4 HOH C 15 615 423 HOH HOH . Z 4 HOH C 16 616 438 HOH HOH . Z 4 HOH C 17 617 417 HOH HOH . Z 4 HOH C 18 618 430 HOH HOH . Z 4 HOH C 19 619 424 HOH HOH . Z 4 HOH C 20 620 432 HOH HOH . Z 4 HOH C 21 621 433 HOH HOH . Z 4 HOH C 22 622 426 HOH HOH . Z 4 HOH C 23 623 416 HOH HOH . Z 4 HOH C 24 624 437 HOH HOH . Z 4 HOH C 25 625 428 HOH HOH . Z 4 HOH C 26 626 421 HOH HOH . Z 4 HOH C 27 627 425 HOH HOH . AA 4 HOH D 1 601 425 HOH HOH . AA 4 HOH D 2 602 422 HOH HOH . AA 4 HOH D 3 603 432 HOH HOH . AA 4 HOH D 4 604 430 HOH HOH . AA 4 HOH D 5 605 417 HOH HOH . AA 4 HOH D 6 606 415 HOH HOH . AA 4 HOH D 7 607 431 HOH HOH . AA 4 HOH D 8 608 426 HOH HOH . AA 4 HOH D 9 609 414 HOH HOH . AA 4 HOH D 10 610 423 HOH HOH . AA 4 HOH D 11 611 424 HOH HOH . AA 4 HOH D 12 612 433 HOH HOH . AA 4 HOH D 13 613 419 HOH HOH . AA 4 HOH D 14 614 429 HOH HOH . AA 4 HOH D 15 615 420 HOH HOH . AA 4 HOH D 16 616 421 HOH HOH . AA 4 HOH D 17 617 427 HOH HOH . AA 4 HOH D 18 618 432 HOH HOH . AA 4 HOH D 19 619 434 HOH HOH . AA 4 HOH D 20 620 418 HOH HOH . BA 4 HOH E 1 601 420 HOH HOH . BA 4 HOH E 2 602 426 HOH HOH . BA 4 HOH E 3 603 427 HOH HOH . BA 4 HOH E 4 604 417 HOH HOH . BA 4 HOH E 5 605 429 HOH HOH . BA 4 HOH E 6 606 424 HOH HOH . BA 4 HOH E 7 607 419 HOH HOH . BA 4 HOH E 8 608 421 HOH HOH . BA 4 HOH E 9 609 418 HOH HOH . BA 4 HOH E 10 610 432 HOH HOH . BA 4 HOH E 11 611 422 HOH HOH . BA 4 HOH E 12 612 425 HOH HOH . BA 4 HOH E 13 613 431 HOH HOH . BA 4 HOH E 14 614 430 HOH HOH . BA 4 HOH E 15 615 428 HOH HOH . BA 4 HOH E 16 616 423 HOH HOH . BA 4 HOH E 17 617 433 HOH HOH . BA 4 HOH E 18 618 434 HOH HOH . CA 4 HOH F 1 501 426 HOH HOH . CA 4 HOH F 2 502 429 HOH HOH . CA 4 HOH F 3 503 412 HOH HOH . CA 4 HOH F 4 504 427 HOH HOH . CA 4 HOH F 5 505 414 HOH HOH . CA 4 HOH F 6 506 424 HOH HOH . CA 4 HOH F 7 507 413 HOH HOH . CA 4 HOH F 8 508 417 HOH HOH . CA 4 HOH F 9 509 422 HOH HOH . CA 4 HOH F 10 510 420 HOH HOH . CA 4 HOH F 11 511 418 HOH HOH . CA 4 HOH F 12 512 421 HOH HOH . CA 4 HOH F 13 513 415 HOH HOH . CA 4 HOH F 14 514 430 HOH HOH . CA 4 HOH F 15 515 428 HOH HOH . CA 4 HOH F 16 516 423 HOH HOH . CA 4 HOH F 17 517 416 HOH HOH . CA 4 HOH F 18 518 425 HOH HOH . CA 4 HOH F 19 519 419 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 3 _atom_site.Cartn_x 28.396 _atom_site.Cartn_y 13.865 _atom_site.Cartn_z 141.813 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 505 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 71 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #