data_6YF3 # _model_server_result.job_id e3O-rX6tgoXYodxAy7uJrw _model_server_result.datetime_utc '2025-09-13 12:04:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yf3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6YF3 # _exptl.entry_id 6YF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YF3 _cell.length_a 57.279 _cell.length_b 57.279 _cell.length_c 54.296 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 56 A GLU 54 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc2 A OE2 GLU 56 A GLU 54 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc3 A OE1 GLU 56 A GLU 54 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc4 A OE1 GLU 56 A GLU 54 1_555 F NA NA . A NA 205 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc5 C CD CD . A CD 202 1_555 G O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc6 C CD CD . A CD 202 1_555 G O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc7 F NA NA . A NA 205 1_555 G O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc8 F NA NA . A NA 205 1_555 G O HOH . A HOH 337 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc9 F NA NA . A NA 205 1_555 G O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc10 F NA NA . A NA 205 1_555 G O HOH . A HOH 383 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6YF3 _atom_sites.fract_transf_matrix[1][1] 0.017458 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OOZ A 1 201 1 OOZ LI1 . C 3 CD A 1 202 1 CD CD . D 4 CL A 1 203 1 CL CL . E 4 CL A 1 204 2 CL CL . F 5 NA A 1 205 1 NA NA . G 6 HOH A 1 301 29 HOH HOH . G 6 HOH A 2 302 46 HOH HOH . G 6 HOH A 3 303 61 HOH HOH . G 6 HOH A 4 304 30 HOH HOH . G 6 HOH A 5 305 77 HOH HOH . G 6 HOH A 6 306 37 HOH HOH . G 6 HOH A 7 307 98 HOH HOH . G 6 HOH A 8 308 28 HOH HOH . G 6 HOH A 9 309 40 HOH HOH . G 6 HOH A 10 310 94 HOH HOH . G 6 HOH A 11 311 129 HOH HOH . G 6 HOH A 12 312 22 HOH HOH . G 6 HOH A 13 313 86 HOH HOH . G 6 HOH A 14 314 65 HOH HOH . G 6 HOH A 15 315 81 HOH HOH . G 6 HOH A 16 316 82 HOH HOH . G 6 HOH A 17 317 126 HOH HOH . G 6 HOH A 18 318 52 HOH HOH . G 6 HOH A 19 319 62 HOH HOH . G 6 HOH A 20 320 142 HOH HOH . G 6 HOH A 21 321 116 HOH HOH . G 6 HOH A 22 322 24 HOH HOH . G 6 HOH A 23 323 139 HOH HOH . G 6 HOH A 24 324 134 HOH HOH . G 6 HOH A 25 325 128 HOH HOH . G 6 HOH A 26 326 33 HOH HOH . G 6 HOH A 27 327 11 HOH HOH . G 6 HOH A 28 328 119 HOH HOH . G 6 HOH A 29 329 3 HOH HOH . G 6 HOH A 30 330 75 HOH HOH . G 6 HOH A 31 331 19 HOH HOH . G 6 HOH A 32 332 113 HOH HOH . G 6 HOH A 33 333 140 HOH HOH . G 6 HOH A 34 334 18 HOH HOH . G 6 HOH A 35 335 67 HOH HOH . G 6 HOH A 36 336 87 HOH HOH . G 6 HOH A 37 337 50 HOH HOH . G 6 HOH A 38 338 5 HOH HOH . G 6 HOH A 39 339 48 HOH HOH . G 6 HOH A 40 340 27 HOH HOH . G 6 HOH A 41 341 15 HOH HOH . G 6 HOH A 42 342 130 HOH HOH . G 6 HOH A 43 343 120 HOH HOH . G 6 HOH A 44 344 35 HOH HOH . G 6 HOH A 45 345 59 HOH HOH . G 6 HOH A 46 346 6 HOH HOH . G 6 HOH A 47 347 38 HOH HOH . G 6 HOH A 48 348 95 HOH HOH . G 6 HOH A 49 349 41 HOH HOH . G 6 HOH A 50 350 4 HOH HOH . G 6 HOH A 51 351 54 HOH HOH . G 6 HOH A 52 352 108 HOH HOH . G 6 HOH A 53 353 14 HOH HOH . G 6 HOH A 54 354 21 HOH HOH . G 6 HOH A 55 355 17 HOH HOH . G 6 HOH A 56 356 1 HOH HOH . G 6 HOH A 57 357 44 HOH HOH . G 6 HOH A 58 358 25 HOH HOH . G 6 HOH A 59 359 123 HOH HOH . G 6 HOH A 60 360 70 HOH HOH . G 6 HOH A 61 361 39 HOH HOH . G 6 HOH A 62 362 74 HOH HOH . G 6 HOH A 63 363 58 HOH HOH . G 6 HOH A 64 364 31 HOH HOH . G 6 HOH A 65 365 79 HOH HOH . G 6 HOH A 66 366 97 HOH HOH . G 6 HOH A 67 367 10 HOH HOH . G 6 HOH A 68 368 2 HOH HOH . G 6 HOH A 69 369 47 HOH HOH . G 6 HOH A 70 370 45 HOH HOH . G 6 HOH A 71 371 78 HOH HOH . G 6 HOH A 72 372 89 HOH HOH . G 6 HOH A 73 373 100 HOH HOH . G 6 HOH A 74 374 80 HOH HOH . G 6 HOH A 75 375 64 HOH HOH . G 6 HOH A 76 376 96 HOH HOH . G 6 HOH A 77 377 121 HOH HOH . G 6 HOH A 78 378 12 HOH HOH . G 6 HOH A 79 379 88 HOH HOH . G 6 HOH A 80 380 110 HOH HOH . G 6 HOH A 81 381 26 HOH HOH . G 6 HOH A 82 382 127 HOH HOH . G 6 HOH A 83 383 56 HOH HOH . G 6 HOH A 84 384 20 HOH HOH . G 6 HOH A 85 385 16 HOH HOH . G 6 HOH A 86 386 34 HOH HOH . G 6 HOH A 87 387 53 HOH HOH . G 6 HOH A 88 388 42 HOH HOH . G 6 HOH A 89 389 84 HOH HOH . G 6 HOH A 90 390 55 HOH HOH . G 6 HOH A 91 391 73 HOH HOH . G 6 HOH A 92 392 135 HOH HOH . G 6 HOH A 93 393 76 HOH HOH . G 6 HOH A 94 394 115 HOH HOH . G 6 HOH A 95 395 57 HOH HOH . G 6 HOH A 96 396 32 HOH HOH . G 6 HOH A 97 397 69 HOH HOH . G 6 HOH A 98 398 71 HOH HOH . G 6 HOH A 99 399 68 HOH HOH . G 6 HOH A 100 400 66 HOH HOH . G 6 HOH A 101 401 72 HOH HOH . G 6 HOH A 102 402 60 HOH HOH . G 6 HOH A 103 403 93 HOH HOH . G 6 HOH A 104 404 114 HOH HOH . G 6 HOH A 105 405 122 HOH HOH . G 6 HOH A 106 406 51 HOH HOH . G 6 HOH A 107 407 7 HOH HOH . G 6 HOH A 108 408 85 HOH HOH . G 6 HOH A 109 409 91 HOH HOH . G 6 HOH A 110 410 138 HOH HOH . G 6 HOH A 111 411 103 HOH HOH . G 6 HOH A 112 412 90 HOH HOH . G 6 HOH A 113 413 111 HOH HOH . G 6 HOH A 114 414 132 HOH HOH . G 6 HOH A 115 415 118 HOH HOH . G 6 HOH A 116 416 137 HOH HOH . G 6 HOH A 117 417 49 HOH HOH . G 6 HOH A 118 418 117 HOH HOH . G 6 HOH A 119 419 106 HOH HOH . G 6 HOH A 120 420 99 HOH HOH . G 6 HOH A 121 421 105 HOH HOH . G 6 HOH A 122 422 102 HOH HOH . G 6 HOH A 123 423 109 HOH HOH . G 6 HOH A 124 424 63 HOH HOH . G 6 HOH A 125 425 133 HOH HOH . G 6 HOH A 126 426 9 HOH HOH . G 6 HOH A 127 427 101 HOH HOH . G 6 HOH A 128 428 8 HOH HOH . G 6 HOH A 129 429 112 HOH HOH . G 6 HOH A 130 430 131 HOH HOH . G 6 HOH A 131 431 36 HOH HOH . G 6 HOH A 132 432 83 HOH HOH . G 6 HOH A 133 433 124 HOH HOH . G 6 HOH A 134 434 43 HOH HOH . G 6 HOH A 135 435 23 HOH HOH . G 6 HOH A 136 436 92 HOH HOH . G 6 HOH A 137 437 13 HOH HOH . G 6 HOH A 138 438 104 HOH HOH . G 6 HOH A 139 439 107 HOH HOH . G 6 HOH A 140 440 141 HOH HOH . G 6 HOH A 141 441 136 HOH HOH . G 6 HOH A 142 442 125 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -1.184 _atom_site.Cartn_y -1.862 _atom_site.Cartn_z 13.615 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 8.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #