data_6YF6 # _model_server_result.job_id OjUNK19eJxwnKzpFknyF3Q _model_server_result.datetime_utc '2024-11-24 09:41:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 6YF6 # _exptl.entry_id 6YF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YF6 _cell.length_a 38.512 _cell.length_b 63.671 _cell.length_c 134.009 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 41 A ILE 180 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc2 A O THR 42 A THR 181 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc3 A OG1 THR 42 A THR 181 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc4 A O SER 130 A SER 269 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc5 A O GLY 132 A GLY 271 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc6 A OD1 ASP 134 A ASP 273 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc7 C O3 SFU . A SFU 301 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc8 C O4 SFU . A SFU 301 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc9 B O ILE 41 B ILE 180 1_555 G CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc10 B O THR 42 B THR 181 1_555 G CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc11 B OG1 THR 42 B THR 181 1_555 G CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc12 B O SER 130 B SER 269 1_555 G CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc13 B O GLY 132 B GLY 271 1_555 G CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc14 B OD1 ASP 134 B ASP 273 1_555 G CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc15 E O3 SFU . B SFU 301 1_555 G CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc16 E O4 SFU . B SFU 301 1_555 G CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 247 n n P O2 PO4 sing 248 n n P O3 PO4 sing 249 n n P O4 PO4 sing 250 n n # _atom_sites.entry_id 6YF6 _atom_sites.fract_transf_matrix[1][1] 0.025966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SFU A 1 301 2 SFU LIG . D 3 CA A 1 302 1 CA CA . E 2 SFU B 1 301 5 SFU LIG . F 4 PO4 B 1 302 3 PO4 PO4 . G 3 CA B 1 303 4 CA CA . H 5 HOH A 1 401 128 HOH HOH . H 5 HOH A 2 402 105 HOH HOH . H 5 HOH A 3 403 31 HOH HOH . H 5 HOH A 4 404 1 HOH HOH . H 5 HOH A 5 405 2 HOH HOH . H 5 HOH A 6 406 215 HOH HOH . H 5 HOH A 7 407 17 HOH HOH . H 5 HOH A 8 408 179 HOH HOH . H 5 HOH A 9 409 51 HOH HOH . H 5 HOH A 10 410 139 HOH HOH . H 5 HOH A 11 411 173 HOH HOH . H 5 HOH A 12 412 4 HOH HOH . H 5 HOH A 13 413 121 HOH HOH . H 5 HOH A 14 414 68 HOH HOH . H 5 HOH A 15 415 117 HOH HOH . H 5 HOH A 16 416 39 HOH HOH . H 5 HOH A 17 417 137 HOH HOH . H 5 HOH A 18 418 119 HOH HOH . H 5 HOH A 19 419 107 HOH HOH . H 5 HOH A 20 420 32 HOH HOH . H 5 HOH A 21 421 45 HOH HOH . H 5 HOH A 22 422 6 HOH HOH . H 5 HOH A 23 423 67 HOH HOH . H 5 HOH A 24 424 43 HOH HOH . H 5 HOH A 25 425 95 HOH HOH . H 5 HOH A 26 426 235 HOH HOH . H 5 HOH A 27 427 263 HOH HOH . H 5 HOH A 28 428 26 HOH HOH . H 5 HOH A 29 429 172 HOH HOH . H 5 HOH A 30 430 14 HOH HOH . H 5 HOH A 31 431 206 HOH HOH . H 5 HOH A 32 432 182 HOH HOH . H 5 HOH A 33 433 48 HOH HOH . H 5 HOH A 34 434 9 HOH HOH . H 5 HOH A 35 435 69 HOH HOH . H 5 HOH A 36 436 7 HOH HOH . H 5 HOH A 37 437 225 HOH HOH . H 5 HOH A 38 438 41 HOH HOH . H 5 HOH A 39 439 162 HOH HOH . H 5 HOH A 40 440 81 HOH HOH . H 5 HOH A 41 441 141 HOH HOH . H 5 HOH A 42 442 57 HOH HOH . H 5 HOH A 43 443 158 HOH HOH . H 5 HOH A 44 444 18 HOH HOH . H 5 HOH A 45 445 89 HOH HOH . H 5 HOH A 46 446 171 HOH HOH . H 5 HOH A 47 447 167 HOH HOH . H 5 HOH A 48 448 176 HOH HOH . H 5 HOH A 49 449 250 HOH HOH . H 5 HOH A 50 450 65 HOH HOH . H 5 HOH A 51 451 8 HOH HOH . H 5 HOH A 52 452 24 HOH HOH . H 5 HOH A 53 453 103 HOH HOH . H 5 HOH A 54 454 201 HOH HOH . H 5 HOH A 55 455 30 HOH HOH . H 5 HOH A 56 456 145 HOH HOH . H 5 HOH A 57 457 102 HOH HOH . H 5 HOH A 58 458 3 HOH HOH . H 5 HOH A 59 459 190 HOH HOH . H 5 HOH A 60 460 152 HOH HOH . H 5 HOH A 61 461 236 HOH HOH . H 5 HOH A 62 462 203 HOH HOH . H 5 HOH A 63 463 56 HOH HOH . H 5 HOH A 64 464 29 HOH HOH . H 5 HOH A 65 465 23 HOH HOH . H 5 HOH A 66 466 153 HOH HOH . H 5 HOH A 67 467 16 HOH HOH . H 5 HOH A 68 468 40 HOH HOH . H 5 HOH A 69 469 161 HOH HOH . H 5 HOH A 70 470 35 HOH HOH . H 5 HOH A 71 471 42 HOH HOH . H 5 HOH A 72 472 146 HOH HOH . H 5 HOH A 73 473 242 HOH HOH . H 5 HOH A 74 474 10 HOH HOH . H 5 HOH A 75 475 44 HOH HOH . H 5 HOH A 76 476 86 HOH HOH . H 5 HOH A 77 477 63 HOH HOH . H 5 HOH A 78 478 262 HOH HOH . H 5 HOH A 79 479 46 HOH HOH . H 5 HOH A 80 480 37 HOH HOH . H 5 HOH A 81 481 127 HOH HOH . H 5 HOH A 82 482 234 HOH HOH . H 5 HOH A 83 483 70 HOH HOH . H 5 HOH A 84 484 50 HOH HOH . H 5 HOH A 85 485 109 HOH HOH . H 5 HOH A 86 486 25 HOH HOH . H 5 HOH A 87 487 100 HOH HOH . H 5 HOH A 88 488 231 HOH HOH . H 5 HOH A 89 489 228 HOH HOH . H 5 HOH A 90 490 74 HOH HOH . H 5 HOH A 91 491 104 HOH HOH . H 5 HOH A 92 492 92 HOH HOH . H 5 HOH A 93 493 116 HOH HOH . H 5 HOH A 94 494 241 HOH HOH . H 5 HOH A 95 495 75 HOH HOH . H 5 HOH A 96 496 53 HOH HOH . H 5 HOH A 97 497 210 HOH HOH . H 5 HOH A 98 498 108 HOH HOH . H 5 HOH A 99 499 58 HOH HOH . H 5 HOH A 100 500 196 HOH HOH . H 5 HOH A 101 501 12 HOH HOH . H 5 HOH A 102 502 49 HOH HOH . H 5 HOH A 103 503 123 HOH HOH . H 5 HOH A 104 504 238 HOH HOH . H 5 HOH A 105 505 245 HOH HOH . H 5 HOH A 106 506 157 HOH HOH . H 5 HOH A 107 507 230 HOH HOH . H 5 HOH A 108 508 125 HOH HOH . H 5 HOH A 109 509 175 HOH HOH . H 5 HOH A 110 510 101 HOH HOH . H 5 HOH A 111 511 36 HOH HOH . H 5 HOH A 112 512 73 HOH HOH . H 5 HOH A 113 513 97 HOH HOH . H 5 HOH A 114 514 159 HOH HOH . H 5 HOH A 115 515 163 HOH HOH . H 5 HOH A 116 516 84 HOH HOH . H 5 HOH A 117 517 233 HOH HOH . H 5 HOH A 118 518 135 HOH HOH . H 5 HOH A 119 519 122 HOH HOH . H 5 HOH A 120 520 20 HOH HOH . H 5 HOH A 121 521 239 HOH HOH . H 5 HOH A 122 522 112 HOH HOH . H 5 HOH A 123 523 168 HOH HOH . H 5 HOH A 124 524 98 HOH HOH . H 5 HOH A 125 525 191 HOH HOH . H 5 HOH A 126 526 220 HOH HOH . H 5 HOH A 127 527 113 HOH HOH . H 5 HOH A 128 528 229 HOH HOH . H 5 HOH A 129 529 155 HOH HOH . H 5 HOH A 130 530 90 HOH HOH . H 5 HOH A 131 531 118 HOH HOH . H 5 HOH A 132 532 144 HOH HOH . H 5 HOH A 133 533 189 HOH HOH . H 5 HOH A 134 534 93 HOH HOH . H 5 HOH A 135 535 218 HOH HOH . H 5 HOH A 136 536 186 HOH HOH . H 5 HOH A 137 537 147 HOH HOH . H 5 HOH A 138 538 197 HOH HOH . H 5 HOH A 139 539 212 HOH HOH . H 5 HOH A 140 540 221 HOH HOH . H 5 HOH A 141 541 165 HOH HOH . H 5 HOH A 142 542 260 HOH HOH . H 5 HOH A 143 543 254 HOH HOH . H 5 HOH A 144 544 28 HOH HOH . H 5 HOH A 145 545 198 HOH HOH . H 5 HOH A 146 546 79 HOH HOH . H 5 HOH A 147 547 205 HOH HOH . H 5 HOH A 148 548 120 HOH HOH . H 5 HOH A 149 549 216 HOH HOH . H 5 HOH A 150 550 99 HOH HOH . H 5 HOH A 151 551 106 HOH HOH . H 5 HOH A 152 552 258 HOH HOH . H 5 HOH A 153 553 200 HOH HOH . H 5 HOH A 154 554 256 HOH HOH . H 5 HOH A 155 555 94 HOH HOH . H 5 HOH A 156 556 91 HOH HOH . H 5 HOH A 157 557 259 HOH HOH . I 5 HOH B 1 401 202 HOH HOH . I 5 HOH B 2 402 78 HOH HOH . I 5 HOH B 3 403 131 HOH HOH . I 5 HOH B 4 404 114 HOH HOH . I 5 HOH B 5 405 110 HOH HOH . I 5 HOH B 6 406 85 HOH HOH . I 5 HOH B 7 407 209 HOH HOH . I 5 HOH B 8 408 55 HOH HOH . I 5 HOH B 9 409 194 HOH HOH . I 5 HOH B 10 410 138 HOH HOH . I 5 HOH B 11 411 214 HOH HOH . I 5 HOH B 12 412 187 HOH HOH . I 5 HOH B 13 413 21 HOH HOH . I 5 HOH B 14 414 174 HOH HOH . I 5 HOH B 15 415 19 HOH HOH . I 5 HOH B 16 416 226 HOH HOH . I 5 HOH B 17 417 22 HOH HOH . I 5 HOH B 18 418 88 HOH HOH . I 5 HOH B 19 419 83 HOH HOH . I 5 HOH B 20 420 34 HOH HOH . I 5 HOH B 21 421 140 HOH HOH . I 5 HOH B 22 422 129 HOH HOH . I 5 HOH B 23 423 11 HOH HOH . I 5 HOH B 24 424 184 HOH HOH . I 5 HOH B 25 425 249 HOH HOH . I 5 HOH B 26 426 132 HOH HOH . I 5 HOH B 27 427 252 HOH HOH . I 5 HOH B 28 428 5 HOH HOH . I 5 HOH B 29 429 237 HOH HOH . I 5 HOH B 30 430 33 HOH HOH . I 5 HOH B 31 431 143 HOH HOH . I 5 HOH B 32 432 142 HOH HOH . I 5 HOH B 33 433 66 HOH HOH . I 5 HOH B 34 434 154 HOH HOH . I 5 HOH B 35 435 134 HOH HOH . I 5 HOH B 36 436 82 HOH HOH . I 5 HOH B 37 437 13 HOH HOH . I 5 HOH B 38 438 61 HOH HOH . I 5 HOH B 39 439 27 HOH HOH . I 5 HOH B 40 440 217 HOH HOH . I 5 HOH B 41 441 15 HOH HOH . I 5 HOH B 42 442 149 HOH HOH . I 5 HOH B 43 443 111 HOH HOH . I 5 HOH B 44 444 124 HOH HOH . I 5 HOH B 45 445 77 HOH HOH . I 5 HOH B 46 446 177 HOH HOH . I 5 HOH B 47 447 195 HOH HOH . I 5 HOH B 48 448 160 HOH HOH . I 5 HOH B 49 449 54 HOH HOH . I 5 HOH B 50 450 244 HOH HOH . I 5 HOH B 51 451 207 HOH HOH . I 5 HOH B 52 452 87 HOH HOH . I 5 HOH B 53 453 136 HOH HOH . I 5 HOH B 54 454 248 HOH HOH . I 5 HOH B 55 455 71 HOH HOH . I 5 HOH B 56 456 60 HOH HOH . I 5 HOH B 57 457 232 HOH HOH . I 5 HOH B 58 458 133 HOH HOH . I 5 HOH B 59 459 246 HOH HOH . I 5 HOH B 60 460 115 HOH HOH . I 5 HOH B 61 461 76 HOH HOH . I 5 HOH B 62 462 96 HOH HOH . I 5 HOH B 63 463 150 HOH HOH . I 5 HOH B 64 464 181 HOH HOH . I 5 HOH B 65 465 64 HOH HOH . I 5 HOH B 66 466 164 HOH HOH . I 5 HOH B 67 467 156 HOH HOH . I 5 HOH B 68 468 185 HOH HOH . I 5 HOH B 69 469 62 HOH HOH . I 5 HOH B 70 470 180 HOH HOH . I 5 HOH B 71 471 211 HOH HOH . I 5 HOH B 72 472 227 HOH HOH . I 5 HOH B 73 473 178 HOH HOH . I 5 HOH B 74 474 170 HOH HOH . I 5 HOH B 75 475 204 HOH HOH . I 5 HOH B 76 476 72 HOH HOH . I 5 HOH B 77 477 193 HOH HOH . I 5 HOH B 78 478 47 HOH HOH . I 5 HOH B 79 479 151 HOH HOH . I 5 HOH B 80 480 247 HOH HOH . I 5 HOH B 81 481 126 HOH HOH . I 5 HOH B 82 482 148 HOH HOH . I 5 HOH B 83 483 255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 4 2.597 30.413 -19.576 1 30.52 ? P PO4 302 B 1 HETATM 2 O O1 PO4 . . . F 4 1.527 30.048 -20.575 1 30.69 ? O1 PO4 302 B 1 HETATM 3 O O2 PO4 . . . F 4 3.871 30.768 -20.304 1 28.06 ? O2 PO4 302 B 1 HETATM 4 O O3 PO4 . . . F 4 2.87 29.244 -18.662 1 32.81 ? O3 PO4 302 B 1 HETATM 5 O O4 PO4 . . . F 4 2.12 31.583 -18.751 1 33.57 ? O4 PO4 302 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #