data_6YFE
#
_model_server_result.job_id            3ayA9TTvepdYjoOSDSoYGQ 
_model_server_result.datetime_utc      '2025-09-09 05:11:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yfe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VC","auth_seq_id":201}' 
#
_entry.id    6YFE 
#
_exptl.entry_id    6YFE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    30 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YFE 
_cell.length_a            298.111 
_cell.length_b            325.048 
_cell.length_c            346.016 
_cell.Z_PDB               360 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YFE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    180-meric 
_pdbx_struct_assembly.oligomeric_count      180 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 298.111 325.048 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 MC N N 
? 2 NC N N 
? 2 OC N N 
? 2 PC N N 
? 2 QC N N 
? 2 RC N N 
? 2 SC N N 
? 2 TC N N 
? 2 UC N N 
? 2 VC N N 
? 2 WC N N 
? 2 XC N N 
? 2 YC N N 
? 2 ZC N N 
? 2 AD N N 
? 2 BD N N 
? 2 CD N N 
? 2 DD N N 
? 2 ED N N 
? 2 FD N N 
? 2 GD N N 
? 2 HD N N 
? 2 ID N N 
? 2 JD N N 
? 2 KD N N 
? 2 LD N N 
? 2 MD N N 
? 2 ND N N 
? 2 OD N N 
? 2 PD N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OXT TYR 134 AA TYR 134 1_555 MC CA CA . AA CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc2 MC CA CA . AA CA 201 1_555 HB OXT TYR 134 CH TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc3 D OXT TYR 134 AD TYR 134 1_555 ND CA CA . CJ CA 201 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? 
metalc ? metalc4 PC CA CA . AE CA 201 2_665 J OXT TYR 134 AJ TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? 
metalc ? metalc5 QC CA CA . AF CA 201 1_555 S OXT TYR 134 AS TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? 
metalc ? metalc6 SC CA CA . AH CA 201 1_555 JC OXT TYR 134 DJ TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.023 ? 
metalc ? metalc7 M OXT TYR 134 AM TYR 134 1_555 UC CA CA . AM CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? 
metalc ? metalc8 WC CA CA . AQ CA 201 1_555 AC OXT TYR 134 DA TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? 
metalc ? metalc9 XC CA CA . AW CA 201 2_665 EA OXT TYR 134 BE TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc10 YC CA CA . AZ CA 201 1_555 XB OXT TYR 134 CX TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc11 BA OXT TYR 134 BB TYR 134 1_555 ZC CA CA . BB CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? 
metalc ? metalc12 AD CA CA . BC CA 201 1_555 QA OXT TYR 134 BQ TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? 
metalc ? metalc13 KA OXT TYR 134 BK TYR 134 1_555 ED CA CA . BK CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? 
metalc ? metalc14 GD CA CA . BR CA 201 1_555 GC OXT TYR 134 DG TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? 
metalc ? metalc15 FB OXT TYR 134 CF TYR 134 1_555 MD CA CA . CF CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? 
metalc ? metalc16 IB OXT TYR 134 CI TYR 134 1_555 PD CA CA . CV CA 201 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6YFE 
_atom_sites.fract_transf_matrix[1][1]    0.003354 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00289 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
MC 2 CA AA 1 201 201 CA CA . 
NC 2 CA AB 1 201 201 CA CA . 
OC 2 CA AC 1 201 201 CA CA . 
PC 2 CA AE 1 201 201 CA CA . 
QC 2 CA AF 1 201 201 CA CA . 
RC 2 CA AG 1 201 201 CA CA . 
SC 2 CA AH 1 201 201 CA CA . 
TC 2 CA AK 1 201 201 CA CA . 
UC 2 CA AM 1 201 201 CA CA . 
VC 2 CA AN 1 201 201 CA CA . 
WC 2 CA AQ 1 201 201 CA CA . 
XC 2 CA AW 1 201 201 CA CA . 
YC 2 CA AZ 1 201 201 CA CA . 
ZC 2 CA BB 1 201 201 CA CA . 
AD 2 CA BC 1 201 201 CA CA . 
BD 2 CA BF 1 201 201 CA CA . 
CD 2 CA BH 1 201 201 CA CA . 
DD 2 CA BI 1 201 201 CA CA . 
ED 2 CA BK 1 201 201 CA CA . 
FD 2 CA BL 1 201 201 CA CA . 
GD 2 CA BR 1 201 201 CA CA . 
HD 2 CA BT 1 201 201 CA CA . 
ID 2 CA BX 1 201 201 CA CA . 
JD 2 CA CA 1 201 201 CA CA . 
KD 2 CA CC 1 201 201 CA CA . 
LD 2 CA CD 1 201 201 CA CA . 
MD 2 CA CF 1 201 201 CA CA . 
ND 2 CA CJ 1 201 201 CA CA . 
OD 2 CA CS 1 201 201 CA CA . 
PD 2 CA CV 1 201 201 CA CA . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         VC 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               143.349 
_atom_site.Cartn_y               286.336 
_atom_site.Cartn_z               44.134 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        64.79 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          AN 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              105 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    70 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#