data_6YG2 # _model_server_result.job_id 38sZJgOpQFAeVuq10vsbKQ _model_server_result.datetime_utc '2024-11-13 12:12:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":511}' # _entry.id 6YG2 # _exptl.entry_id 6YG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YG2 _cell.length_a 53.111 _cell.length_b 74.955 _cell.length_c 86.666 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 104 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 218 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id O _struct_conn.ptnr2_label_atom_id CAA _struct_conn.ptnr2_label_comp_id 8E8 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 8E8 _struct_conn.ptnr2_auth_seq_id 514 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.606 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 207 n n S C1 DMS sing 208 n n S C2 DMS sing 209 n n C1 H11 DMS sing 210 n n C1 H12 DMS sing 211 n n C1 H13 DMS sing 212 n n C2 H21 DMS sing 213 n n C2 H22 DMS sing 214 n n C2 H23 DMS sing 215 n n # _atom_sites.entry_id 6YG2 _atom_sites.fract_transf_matrix[1][1] 0.018828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 302 EDO EDO . C 2 EDO A 1 502 303 EDO EDO . D 2 EDO A 1 503 304 EDO EDO . E 2 EDO A 1 504 305 EDO EDO . F 2 EDO A 1 505 306 EDO EDO . G 2 EDO A 1 506 307 EDO EDO . H 2 EDO A 1 507 308 EDO EDO . I 2 EDO A 1 508 309 EDO EDO . J 3 DMS A 1 509 319 DMS DMS . K 3 DMS A 1 510 320 DMS DMS . L 3 DMS A 1 511 321 DMS DMS . M 3 DMS A 1 512 322 DMS DMS . N 4 1E8 A 1 513 1 1E8 RRR . O 5 8E8 A 1 514 2 8E8 RRS . P 6 HOH A 1 601 189 HOH HOH . P 6 HOH A 2 602 52 HOH HOH . P 6 HOH A 3 603 111 HOH HOH . P 6 HOH A 4 604 164 HOH HOH . P 6 HOH A 5 605 50 HOH HOH . P 6 HOH A 6 606 34 HOH HOH . P 6 HOH A 7 607 194 HOH HOH . P 6 HOH A 8 608 146 HOH HOH . P 6 HOH A 9 609 107 HOH HOH . P 6 HOH A 10 610 56 HOH HOH . P 6 HOH A 11 611 104 HOH HOH . P 6 HOH A 12 612 60 HOH HOH . P 6 HOH A 13 613 165 HOH HOH . P 6 HOH A 14 614 32 HOH HOH . P 6 HOH A 15 615 158 HOH HOH . P 6 HOH A 16 616 168 HOH HOH . P 6 HOH A 17 617 58 HOH HOH . P 6 HOH A 18 618 105 HOH HOH . P 6 HOH A 19 619 66 HOH HOH . P 6 HOH A 20 620 82 HOH HOH . P 6 HOH A 21 621 46 HOH HOH . P 6 HOH A 22 622 79 HOH HOH . P 6 HOH A 23 623 88 HOH HOH . P 6 HOH A 24 624 21 HOH HOH . P 6 HOH A 25 625 90 HOH HOH . P 6 HOH A 26 626 2 HOH HOH . P 6 HOH A 27 627 83 HOH HOH . P 6 HOH A 28 628 22 HOH HOH . P 6 HOH A 29 629 70 HOH HOH . P 6 HOH A 30 630 87 HOH HOH . P 6 HOH A 31 631 81 HOH HOH . P 6 HOH A 32 632 25 HOH HOH . P 6 HOH A 33 633 141 HOH HOH . P 6 HOH A 34 634 120 HOH HOH . P 6 HOH A 35 635 41 HOH HOH . P 6 HOH A 36 636 96 HOH HOH . P 6 HOH A 37 637 155 HOH HOH . P 6 HOH A 38 638 57 HOH HOH . P 6 HOH A 39 639 148 HOH HOH . P 6 HOH A 40 640 159 HOH HOH . P 6 HOH A 41 641 13 HOH HOH . P 6 HOH A 42 642 28 HOH HOH . P 6 HOH A 43 643 40 HOH HOH . P 6 HOH A 44 644 44 HOH HOH . P 6 HOH A 45 645 73 HOH HOH . P 6 HOH A 46 646 35 HOH HOH . P 6 HOH A 47 647 7 HOH HOH . P 6 HOH A 48 648 1 HOH HOH . P 6 HOH A 49 649 186 HOH HOH . P 6 HOH A 50 650 59 HOH HOH . P 6 HOH A 51 651 12 HOH HOH . P 6 HOH A 52 652 43 HOH HOH . P 6 HOH A 53 653 36 HOH HOH . P 6 HOH A 54 654 47 HOH HOH . P 6 HOH A 55 655 69 HOH HOH . P 6 HOH A 56 656 94 HOH HOH . P 6 HOH A 57 657 62 HOH HOH . P 6 HOH A 58 658 175 HOH HOH . P 6 HOH A 59 659 197 HOH HOH . P 6 HOH A 60 660 6 HOH HOH . P 6 HOH A 61 661 53 HOH HOH . P 6 HOH A 62 662 54 HOH HOH . P 6 HOH A 63 663 113 HOH HOH . P 6 HOH A 64 664 29 HOH HOH . P 6 HOH A 65 665 126 HOH HOH . P 6 HOH A 66 666 68 HOH HOH . P 6 HOH A 67 667 157 HOH HOH . P 6 HOH A 68 668 55 HOH HOH . P 6 HOH A 69 669 48 HOH HOH . P 6 HOH A 70 670 37 HOH HOH . P 6 HOH A 71 671 63 HOH HOH . P 6 HOH A 72 672 93 HOH HOH . P 6 HOH A 73 673 74 HOH HOH . P 6 HOH A 74 674 23 HOH HOH . P 6 HOH A 75 675 98 HOH HOH . P 6 HOH A 76 676 101 HOH HOH . P 6 HOH A 77 677 75 HOH HOH . P 6 HOH A 78 678 114 HOH HOH . P 6 HOH A 79 679 45 HOH HOH . P 6 HOH A 80 680 198 HOH HOH . P 6 HOH A 81 681 18 HOH HOH . P 6 HOH A 82 682 84 HOH HOH . P 6 HOH A 83 683 49 HOH HOH . P 6 HOH A 84 684 39 HOH HOH . P 6 HOH A 85 685 145 HOH HOH . P 6 HOH A 86 686 67 HOH HOH . P 6 HOH A 87 687 76 HOH HOH . P 6 HOH A 88 688 85 HOH HOH . P 6 HOH A 89 689 110 HOH HOH . P 6 HOH A 90 690 5 HOH HOH . P 6 HOH A 91 691 174 HOH HOH . P 6 HOH A 92 692 33 HOH HOH . P 6 HOH A 93 693 102 HOH HOH . P 6 HOH A 94 694 100 HOH HOH . P 6 HOH A 95 695 17 HOH HOH . P 6 HOH A 96 696 204 HOH HOH . P 6 HOH A 97 697 130 HOH HOH . P 6 HOH A 98 698 65 HOH HOH . P 6 HOH A 99 699 11 HOH HOH . P 6 HOH A 100 700 89 HOH HOH . P 6 HOH A 101 701 99 HOH HOH . P 6 HOH A 102 702 154 HOH HOH . P 6 HOH A 103 703 86 HOH HOH . P 6 HOH A 104 704 72 HOH HOH . P 6 HOH A 105 705 143 HOH HOH . P 6 HOH A 106 706 78 HOH HOH . P 6 HOH A 107 707 30 HOH HOH . P 6 HOH A 108 708 15 HOH HOH . P 6 HOH A 109 709 172 HOH HOH . P 6 HOH A 110 710 161 HOH HOH . P 6 HOH A 111 711 153 HOH HOH . P 6 HOH A 112 712 8 HOH HOH . P 6 HOH A 113 713 61 HOH HOH . P 6 HOH A 114 714 64 HOH HOH . P 6 HOH A 115 715 10 HOH HOH . P 6 HOH A 116 716 16 HOH HOH . P 6 HOH A 117 717 19 HOH HOH . P 6 HOH A 118 718 3 HOH HOH . P 6 HOH A 119 719 184 HOH HOH . P 6 HOH A 120 720 176 HOH HOH . P 6 HOH A 121 721 156 HOH HOH . P 6 HOH A 122 722 169 HOH HOH . P 6 HOH A 123 723 180 HOH HOH . P 6 HOH A 124 724 26 HOH HOH . P 6 HOH A 125 725 179 HOH HOH . P 6 HOH A 126 726 152 HOH HOH . P 6 HOH A 127 727 144 HOH HOH . P 6 HOH A 128 728 27 HOH HOH . P 6 HOH A 129 729 167 HOH HOH . P 6 HOH A 130 730 195 HOH HOH . P 6 HOH A 131 731 4 HOH HOH . P 6 HOH A 132 732 38 HOH HOH . P 6 HOH A 133 733 77 HOH HOH . P 6 HOH A 134 734 14 HOH HOH . P 6 HOH A 135 735 133 HOH HOH . P 6 HOH A 136 736 24 HOH HOH . P 6 HOH A 137 737 135 HOH HOH . P 6 HOH A 138 738 97 HOH HOH . P 6 HOH A 139 739 80 HOH HOH . P 6 HOH A 140 740 203 HOH HOH . P 6 HOH A 141 741 183 HOH HOH . P 6 HOH A 142 742 163 HOH HOH . P 6 HOH A 143 743 185 HOH HOH . P 6 HOH A 144 744 202 HOH HOH . P 6 HOH A 145 745 129 HOH HOH . P 6 HOH A 146 746 205 HOH HOH . P 6 HOH A 147 747 160 HOH HOH . P 6 HOH A 148 748 170 HOH HOH . P 6 HOH A 149 749 150 HOH HOH . P 6 HOH A 150 750 95 HOH HOH . P 6 HOH A 151 751 192 HOH HOH . P 6 HOH A 152 752 106 HOH HOH . P 6 HOH A 153 753 131 HOH HOH . P 6 HOH A 154 754 191 HOH HOH . P 6 HOH A 155 755 188 HOH HOH . P 6 HOH A 156 756 200 HOH HOH . P 6 HOH A 157 757 181 HOH HOH . P 6 HOH A 158 758 142 HOH HOH . P 6 HOH A 159 759 140 HOH HOH . P 6 HOH A 160 760 178 HOH HOH . P 6 HOH A 161 761 139 HOH HOH . P 6 HOH A 162 762 196 HOH HOH . P 6 HOH A 163 763 187 HOH HOH . P 6 HOH A 164 764 190 HOH HOH . P 6 HOH A 165 765 201 HOH HOH . P 6 HOH A 166 766 132 HOH HOH . P 6 HOH A 167 767 182 HOH HOH . P 6 HOH A 168 768 149 HOH HOH . P 6 HOH A 169 769 147 HOH HOH . P 6 HOH A 170 770 125 HOH HOH . P 6 HOH A 171 771 171 HOH HOH . P 6 HOH A 172 772 112 HOH HOH . P 6 HOH A 173 773 31 HOH HOH . P 6 HOH A 174 774 138 HOH HOH . P 6 HOH A 175 775 206 HOH HOH . P 6 HOH A 176 776 173 HOH HOH . P 6 HOH A 177 777 199 HOH HOH . P 6 HOH A 178 778 151 HOH HOH . P 6 HOH A 179 779 162 HOH HOH . P 6 HOH A 180 780 127 HOH HOH . P 6 HOH A 181 781 128 HOH HOH . P 6 HOH A 182 782 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . L 3 3.062 30.183 33.996 1 70.82 ? S DMS 511 A 1 HETATM 2 O O DMS . . . L 3 1.802 30.323 34.749 1 66.16 ? O DMS 511 A 1 HETATM 3 C C1 DMS . . . L 3 3.353 31.647 33.194 1 68.58 ? C1 DMS 511 A 1 HETATM 4 C C2 DMS . . . L 3 4.424 30.126 35.004 1 60.74 ? C2 DMS 511 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #