data_6YG2
#
_model_server_result.job_id            DjgEtNIOvPQwPWgTZ_d7Uw 
_model_server_result.datetime_utc      '2024-11-13 11:56:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yg2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":512}' 
#
_entry.id    6YG2 
#
_exptl.entry_id    6YG2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YG2 
_cell.length_a            53.111 
_cell.length_b            74.955 
_cell.length_c            86.666 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YG2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             104 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              218 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            O 
_struct_conn.ptnr2_label_atom_id            CAA 
_struct_conn.ptnr2_label_comp_id            8E8 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             8E8 
_struct_conn.ptnr2_auth_seq_id              514 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.606 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 207 n n 
S C1 DMS sing 208 n n 
S C2 DMS sing 209 n n 
C1 H11 DMS sing 210 n n 
C1 H12 DMS sing 211 n n 
C1 H13 DMS sing 212 n n 
C2 H21 DMS sing 213 n n 
C2 H22 DMS sing 214 n n 
C2 H23 DMS sing 215 n n 
#
_atom_sites.entry_id                     6YG2 
_atom_sites.fract_transf_matrix[1][1]    0.018828 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013341 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011539 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 501 302 EDO EDO . 
C 2 EDO A 1 502 303 EDO EDO . 
D 2 EDO A 1 503 304 EDO EDO . 
E 2 EDO A 1 504 305 EDO EDO . 
F 2 EDO A 1 505 306 EDO EDO . 
G 2 EDO A 1 506 307 EDO EDO . 
H 2 EDO A 1 507 308 EDO EDO . 
I 2 EDO A 1 508 309 EDO EDO . 
J 3 DMS A 1 509 319 DMS DMS . 
K 3 DMS A 1 510 320 DMS DMS . 
L 3 DMS A 1 511 321 DMS DMS . 
M 3 DMS A 1 512 322 DMS DMS . 
N 4 1E8 A 1 513 1 1E8 RRR . 
O 5 8E8 A 1 514 2 8E8 RRS . 
P 6 HOH A 1 601 189 HOH HOH . 
P 6 HOH A 2 602 52 HOH HOH . 
P 6 HOH A 3 603 111 HOH HOH . 
P 6 HOH A 4 604 164 HOH HOH . 
P 6 HOH A 5 605 50 HOH HOH . 
P 6 HOH A 6 606 34 HOH HOH . 
P 6 HOH A 7 607 194 HOH HOH . 
P 6 HOH A 8 608 146 HOH HOH . 
P 6 HOH A 9 609 107 HOH HOH . 
P 6 HOH A 10 610 56 HOH HOH . 
P 6 HOH A 11 611 104 HOH HOH . 
P 6 HOH A 12 612 60 HOH HOH . 
P 6 HOH A 13 613 165 HOH HOH . 
P 6 HOH A 14 614 32 HOH HOH . 
P 6 HOH A 15 615 158 HOH HOH . 
P 6 HOH A 16 616 168 HOH HOH . 
P 6 HOH A 17 617 58 HOH HOH . 
P 6 HOH A 18 618 105 HOH HOH . 
P 6 HOH A 19 619 66 HOH HOH . 
P 6 HOH A 20 620 82 HOH HOH . 
P 6 HOH A 21 621 46 HOH HOH . 
P 6 HOH A 22 622 79 HOH HOH . 
P 6 HOH A 23 623 88 HOH HOH . 
P 6 HOH A 24 624 21 HOH HOH . 
P 6 HOH A 25 625 90 HOH HOH . 
P 6 HOH A 26 626 2 HOH HOH . 
P 6 HOH A 27 627 83 HOH HOH . 
P 6 HOH A 28 628 22 HOH HOH . 
P 6 HOH A 29 629 70 HOH HOH . 
P 6 HOH A 30 630 87 HOH HOH . 
P 6 HOH A 31 631 81 HOH HOH . 
P 6 HOH A 32 632 25 HOH HOH . 
P 6 HOH A 33 633 141 HOH HOH . 
P 6 HOH A 34 634 120 HOH HOH . 
P 6 HOH A 35 635 41 HOH HOH . 
P 6 HOH A 36 636 96 HOH HOH . 
P 6 HOH A 37 637 155 HOH HOH . 
P 6 HOH A 38 638 57 HOH HOH . 
P 6 HOH A 39 639 148 HOH HOH . 
P 6 HOH A 40 640 159 HOH HOH . 
P 6 HOH A 41 641 13 HOH HOH . 
P 6 HOH A 42 642 28 HOH HOH . 
P 6 HOH A 43 643 40 HOH HOH . 
P 6 HOH A 44 644 44 HOH HOH . 
P 6 HOH A 45 645 73 HOH HOH . 
P 6 HOH A 46 646 35 HOH HOH . 
P 6 HOH A 47 647 7 HOH HOH . 
P 6 HOH A 48 648 1 HOH HOH . 
P 6 HOH A 49 649 186 HOH HOH . 
P 6 HOH A 50 650 59 HOH HOH . 
P 6 HOH A 51 651 12 HOH HOH . 
P 6 HOH A 52 652 43 HOH HOH . 
P 6 HOH A 53 653 36 HOH HOH . 
P 6 HOH A 54 654 47 HOH HOH . 
P 6 HOH A 55 655 69 HOH HOH . 
P 6 HOH A 56 656 94 HOH HOH . 
P 6 HOH A 57 657 62 HOH HOH . 
P 6 HOH A 58 658 175 HOH HOH . 
P 6 HOH A 59 659 197 HOH HOH . 
P 6 HOH A 60 660 6 HOH HOH . 
P 6 HOH A 61 661 53 HOH HOH . 
P 6 HOH A 62 662 54 HOH HOH . 
P 6 HOH A 63 663 113 HOH HOH . 
P 6 HOH A 64 664 29 HOH HOH . 
P 6 HOH A 65 665 126 HOH HOH . 
P 6 HOH A 66 666 68 HOH HOH . 
P 6 HOH A 67 667 157 HOH HOH . 
P 6 HOH A 68 668 55 HOH HOH . 
P 6 HOH A 69 669 48 HOH HOH . 
P 6 HOH A 70 670 37 HOH HOH . 
P 6 HOH A 71 671 63 HOH HOH . 
P 6 HOH A 72 672 93 HOH HOH . 
P 6 HOH A 73 673 74 HOH HOH . 
P 6 HOH A 74 674 23 HOH HOH . 
P 6 HOH A 75 675 98 HOH HOH . 
P 6 HOH A 76 676 101 HOH HOH . 
P 6 HOH A 77 677 75 HOH HOH . 
P 6 HOH A 78 678 114 HOH HOH . 
P 6 HOH A 79 679 45 HOH HOH . 
P 6 HOH A 80 680 198 HOH HOH . 
P 6 HOH A 81 681 18 HOH HOH . 
P 6 HOH A 82 682 84 HOH HOH . 
P 6 HOH A 83 683 49 HOH HOH . 
P 6 HOH A 84 684 39 HOH HOH . 
P 6 HOH A 85 685 145 HOH HOH . 
P 6 HOH A 86 686 67 HOH HOH . 
P 6 HOH A 87 687 76 HOH HOH . 
P 6 HOH A 88 688 85 HOH HOH . 
P 6 HOH A 89 689 110 HOH HOH . 
P 6 HOH A 90 690 5 HOH HOH . 
P 6 HOH A 91 691 174 HOH HOH . 
P 6 HOH A 92 692 33 HOH HOH . 
P 6 HOH A 93 693 102 HOH HOH . 
P 6 HOH A 94 694 100 HOH HOH . 
P 6 HOH A 95 695 17 HOH HOH . 
P 6 HOH A 96 696 204 HOH HOH . 
P 6 HOH A 97 697 130 HOH HOH . 
P 6 HOH A 98 698 65 HOH HOH . 
P 6 HOH A 99 699 11 HOH HOH . 
P 6 HOH A 100 700 89 HOH HOH . 
P 6 HOH A 101 701 99 HOH HOH . 
P 6 HOH A 102 702 154 HOH HOH . 
P 6 HOH A 103 703 86 HOH HOH . 
P 6 HOH A 104 704 72 HOH HOH . 
P 6 HOH A 105 705 143 HOH HOH . 
P 6 HOH A 106 706 78 HOH HOH . 
P 6 HOH A 107 707 30 HOH HOH . 
P 6 HOH A 108 708 15 HOH HOH . 
P 6 HOH A 109 709 172 HOH HOH . 
P 6 HOH A 110 710 161 HOH HOH . 
P 6 HOH A 111 711 153 HOH HOH . 
P 6 HOH A 112 712 8 HOH HOH . 
P 6 HOH A 113 713 61 HOH HOH . 
P 6 HOH A 114 714 64 HOH HOH . 
P 6 HOH A 115 715 10 HOH HOH . 
P 6 HOH A 116 716 16 HOH HOH . 
P 6 HOH A 117 717 19 HOH HOH . 
P 6 HOH A 118 718 3 HOH HOH . 
P 6 HOH A 119 719 184 HOH HOH . 
P 6 HOH A 120 720 176 HOH HOH . 
P 6 HOH A 121 721 156 HOH HOH . 
P 6 HOH A 122 722 169 HOH HOH . 
P 6 HOH A 123 723 180 HOH HOH . 
P 6 HOH A 124 724 26 HOH HOH . 
P 6 HOH A 125 725 179 HOH HOH . 
P 6 HOH A 126 726 152 HOH HOH . 
P 6 HOH A 127 727 144 HOH HOH . 
P 6 HOH A 128 728 27 HOH HOH . 
P 6 HOH A 129 729 167 HOH HOH . 
P 6 HOH A 130 730 195 HOH HOH . 
P 6 HOH A 131 731 4 HOH HOH . 
P 6 HOH A 132 732 38 HOH HOH . 
P 6 HOH A 133 733 77 HOH HOH . 
P 6 HOH A 134 734 14 HOH HOH . 
P 6 HOH A 135 735 133 HOH HOH . 
P 6 HOH A 136 736 24 HOH HOH . 
P 6 HOH A 137 737 135 HOH HOH . 
P 6 HOH A 138 738 97 HOH HOH . 
P 6 HOH A 139 739 80 HOH HOH . 
P 6 HOH A 140 740 203 HOH HOH . 
P 6 HOH A 141 741 183 HOH HOH . 
P 6 HOH A 142 742 163 HOH HOH . 
P 6 HOH A 143 743 185 HOH HOH . 
P 6 HOH A 144 744 202 HOH HOH . 
P 6 HOH A 145 745 129 HOH HOH . 
P 6 HOH A 146 746 205 HOH HOH . 
P 6 HOH A 147 747 160 HOH HOH . 
P 6 HOH A 148 748 170 HOH HOH . 
P 6 HOH A 149 749 150 HOH HOH . 
P 6 HOH A 150 750 95 HOH HOH . 
P 6 HOH A 151 751 192 HOH HOH . 
P 6 HOH A 152 752 106 HOH HOH . 
P 6 HOH A 153 753 131 HOH HOH . 
P 6 HOH A 154 754 191 HOH HOH . 
P 6 HOH A 155 755 188 HOH HOH . 
P 6 HOH A 156 756 200 HOH HOH . 
P 6 HOH A 157 757 181 HOH HOH . 
P 6 HOH A 158 758 142 HOH HOH . 
P 6 HOH A 159 759 140 HOH HOH . 
P 6 HOH A 160 760 178 HOH HOH . 
P 6 HOH A 161 761 139 HOH HOH . 
P 6 HOH A 162 762 196 HOH HOH . 
P 6 HOH A 163 763 187 HOH HOH . 
P 6 HOH A 164 764 190 HOH HOH . 
P 6 HOH A 165 765 201 HOH HOH . 
P 6 HOH A 166 766 132 HOH HOH . 
P 6 HOH A 167 767 182 HOH HOH . 
P 6 HOH A 168 768 149 HOH HOH . 
P 6 HOH A 169 769 147 HOH HOH . 
P 6 HOH A 170 770 125 HOH HOH . 
P 6 HOH A 171 771 171 HOH HOH . 
P 6 HOH A 172 772 112 HOH HOH . 
P 6 HOH A 173 773 31 HOH HOH . 
P 6 HOH A 174 774 138 HOH HOH . 
P 6 HOH A 175 775 206 HOH HOH . 
P 6 HOH A 176 776 173 HOH HOH . 
P 6 HOH A 177 777 199 HOH HOH . 
P 6 HOH A 178 778 151 HOH HOH . 
P 6 HOH A 179 779 162 HOH HOH . 
P 6 HOH A 180 780 127 HOH HOH . 
P 6 HOH A 181 781 128 HOH HOH . 
P 6 HOH A 182 782 193 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . M 3 29.401 59.839 34.128 1 58.57 ? S DMS 512 A 1 
HETATM 2 O O DMS . . . M 3 28.957 58.687 34.912 1 48.85 ? O DMS 512 A 1 
HETATM 3 C C1 DMS . . . M 3 30.115 60.97 35.204 1 57.64 ? C1 DMS 512 A 1 
HETATM 4 C C2 DMS . . . M 3 30.811 59.453 33.237 1 55.16 ? C2 DMS 512 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#