data_6YG3
#
_model_server_result.job_id            hj65p5EpTg34-qGXrsiWaw 
_model_server_result.datetime_utc      '2024-11-13 12:17:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yg3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    6YG3 
#
_exptl.entry_id    6YG3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YG3 
_cell.length_a            58.17 
_cell.length_b            64.49 
_cell.length_c            85.5 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YG3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             104 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              218 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            K 
_struct_conn.ptnr2_label_atom_id            C30 
_struct_conn.ptnr2_label_comp_id            6HF 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             6HF 
_struct_conn.ptnr2_auth_seq_id              510 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.85 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 149 n n 
C1 C2 EDO sing 150 n n 
C1 H11 EDO sing 151 n n 
C1 H12 EDO sing 152 n n 
O1 HO1 EDO sing 153 n n 
C2 O2 EDO sing 154 n n 
C2 H21 EDO sing 155 n n 
C2 H22 EDO sing 156 n n 
O2 HO2 EDO sing 157 n n 
#
_atom_sites.entry_id                     6YG3 
_atom_sites.fract_transf_matrix[1][1]    0.017191 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015506 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011696 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 501 201 EDO EDO . 
C 2 EDO A 1 502 202 EDO EDO . 
D 2 EDO A 1 503 203 EDO EDO . 
E 2 EDO A 1 504 204 EDO EDO . 
F 2 EDO A 1 505 205 EDO EDO . 
G 2 EDO A 1 506 206 EDO EDO . 
H 2 EDO A 1 507 207 EDO EDO . 
I 2 EDO A 1 508 208 EDO EDO . 
J 2 EDO A 1 509 209 EDO EDO . 
K 3 6HF A 1 510 1 6HF XXX . 
L 4 HOH A 1 601 121 HOH HOH . 
L 4 HOH A 2 602 113 HOH HOH . 
L 4 HOH A 3 603 116 HOH HOH . 
L 4 HOH A 4 604 16 HOH HOH . 
L 4 HOH A 5 605 24 HOH HOH . 
L 4 HOH A 6 606 73 HOH HOH . 
L 4 HOH A 7 607 111 HOH HOH . 
L 4 HOH A 8 608 39 HOH HOH . 
L 4 HOH A 9 609 12 HOH HOH . 
L 4 HOH A 10 610 88 HOH HOH . 
L 4 HOH A 11 611 126 HOH HOH . 
L 4 HOH A 12 612 72 HOH HOH . 
L 4 HOH A 13 613 123 HOH HOH . 
L 4 HOH A 14 614 32 HOH HOH . 
L 4 HOH A 15 615 9 HOH HOH . 
L 4 HOH A 16 616 48 HOH HOH . 
L 4 HOH A 17 617 69 HOH HOH . 
L 4 HOH A 18 618 22 HOH HOH . 
L 4 HOH A 19 619 47 HOH HOH . 
L 4 HOH A 20 620 93 HOH HOH . 
L 4 HOH A 21 621 19 HOH HOH . 
L 4 HOH A 22 622 25 HOH HOH . 
L 4 HOH A 23 623 96 HOH HOH . 
L 4 HOH A 24 624 33 HOH HOH . 
L 4 HOH A 25 625 38 HOH HOH . 
L 4 HOH A 26 626 83 HOH HOH . 
L 4 HOH A 27 627 57 HOH HOH . 
L 4 HOH A 28 628 89 HOH HOH . 
L 4 HOH A 29 629 5 HOH HOH . 
L 4 HOH A 30 630 4 HOH HOH . 
L 4 HOH A 31 631 29 HOH HOH . 
L 4 HOH A 32 632 30 HOH HOH . 
L 4 HOH A 33 633 78 HOH HOH . 
L 4 HOH A 34 634 99 HOH HOH . 
L 4 HOH A 35 635 102 HOH HOH . 
L 4 HOH A 36 636 100 HOH HOH . 
L 4 HOH A 37 637 77 HOH HOH . 
L 4 HOH A 38 638 42 HOH HOH . 
L 4 HOH A 39 639 31 HOH HOH . 
L 4 HOH A 40 640 49 HOH HOH . 
L 4 HOH A 41 641 45 HOH HOH . 
L 4 HOH A 42 642 37 HOH HOH . 
L 4 HOH A 43 643 6 HOH HOH . 
L 4 HOH A 44 644 27 HOH HOH . 
L 4 HOH A 45 645 104 HOH HOH . 
L 4 HOH A 46 646 59 HOH HOH . 
L 4 HOH A 47 647 71 HOH HOH . 
L 4 HOH A 48 648 66 HOH HOH . 
L 4 HOH A 49 649 115 HOH HOH . 
L 4 HOH A 50 650 75 HOH HOH . 
L 4 HOH A 51 651 44 HOH HOH . 
L 4 HOH A 52 652 76 HOH HOH . 
L 4 HOH A 53 653 107 HOH HOH . 
L 4 HOH A 54 654 46 HOH HOH . 
L 4 HOH A 55 655 120 HOH HOH . 
L 4 HOH A 56 656 82 HOH HOH . 
L 4 HOH A 57 657 63 HOH HOH . 
L 4 HOH A 58 658 103 HOH HOH . 
L 4 HOH A 59 659 125 HOH HOH . 
L 4 HOH A 60 660 21 HOH HOH . 
L 4 HOH A 61 661 62 HOH HOH . 
L 4 HOH A 62 662 43 HOH HOH . 
L 4 HOH A 63 663 91 HOH HOH . 
L 4 HOH A 64 664 58 HOH HOH . 
L 4 HOH A 65 665 2 HOH HOH . 
L 4 HOH A 66 666 18 HOH HOH . 
L 4 HOH A 67 667 15 HOH HOH . 
L 4 HOH A 68 668 28 HOH HOH . 
L 4 HOH A 69 669 1 HOH HOH . 
L 4 HOH A 70 670 20 HOH HOH . 
L 4 HOH A 71 671 85 HOH HOH . 
L 4 HOH A 72 672 26 HOH HOH . 
L 4 HOH A 73 673 65 HOH HOH . 
L 4 HOH A 74 674 35 HOH HOH . 
L 4 HOH A 75 675 124 HOH HOH . 
L 4 HOH A 76 676 14 HOH HOH . 
L 4 HOH A 77 677 36 HOH HOH . 
L 4 HOH A 78 678 34 HOH HOH . 
L 4 HOH A 79 679 54 HOH HOH . 
L 4 HOH A 80 680 86 HOH HOH . 
L 4 HOH A 81 681 119 HOH HOH . 
L 4 HOH A 82 682 60 HOH HOH . 
L 4 HOH A 83 683 50 HOH HOH . 
L 4 HOH A 84 684 11 HOH HOH . 
L 4 HOH A 85 685 23 HOH HOH . 
L 4 HOH A 86 686 41 HOH HOH . 
L 4 HOH A 87 687 114 HOH HOH . 
L 4 HOH A 88 688 3 HOH HOH . 
L 4 HOH A 89 689 128 HOH HOH . 
L 4 HOH A 90 690 17 HOH HOH . 
L 4 HOH A 91 691 8 HOH HOH . 
L 4 HOH A 92 692 7 HOH HOH . 
L 4 HOH A 93 693 108 HOH HOH . 
L 4 HOH A 94 694 70 HOH HOH . 
L 4 HOH A 95 695 95 HOH HOH . 
L 4 HOH A 96 696 110 HOH HOH . 
L 4 HOH A 97 697 56 HOH HOH . 
L 4 HOH A 98 698 127 HOH HOH . 
L 4 HOH A 99 699 109 HOH HOH . 
L 4 HOH A 100 700 55 HOH HOH . 
L 4 HOH A 101 701 117 HOH HOH . 
L 4 HOH A 102 702 98 HOH HOH . 
L 4 HOH A 103 703 94 HOH HOH . 
L 4 HOH A 104 704 118 HOH HOH . 
L 4 HOH A 105 705 84 HOH HOH . 
L 4 HOH A 106 706 122 HOH HOH . 
L 4 HOH A 107 707 61 HOH HOH . 
L 4 HOH A 108 708 101 HOH HOH . 
L 4 HOH A 109 709 92 HOH HOH . 
L 4 HOH A 110 710 106 HOH HOH . 
L 4 HOH A 111 711 90 HOH HOH . 
L 4 HOH A 112 712 79 HOH HOH . 
L 4 HOH A 113 713 112 HOH HOH . 
L 4 HOH A 114 714 53 HOH HOH . 
L 4 HOH A 115 715 68 HOH HOH . 
L 4 HOH A 116 716 81 HOH HOH . 
L 4 HOH A 117 717 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 2 -8.74 29.055 -2.031 1 46.22 ? C1 EDO 503 A 1 
HETATM 2 O O1 EDO . . . D 2 -7.609 28.403 -2.605 1 56.26 ? O1 EDO 503 A 1 
HETATM 3 C C2 EDO . . . D 2 -8.794 28.618 -0.616 1 49.96 ? C2 EDO 503 A 1 
HETATM 4 O O2 EDO . . . D 2 -8.887 27.211 -0.568 1 50.39 ? O2 EDO 503 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#