data_6YG3 # _model_server_result.job_id bUx-ewGkYEcjHT3tdaKU9Q _model_server_result.datetime_utc '2024-11-13 11:54:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6YG3 # _exptl.entry_id 6YG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YG3 _cell.length_a 58.17 _cell.length_b 64.49 _cell.length_c 85.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 104 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 218 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id K _struct_conn.ptnr2_label_atom_id C30 _struct_conn.ptnr2_label_comp_id 6HF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 6HF _struct_conn.ptnr2_auth_seq_id 510 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.85 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 149 n n C1 C2 EDO sing 150 n n C1 H11 EDO sing 151 n n C1 H12 EDO sing 152 n n O1 HO1 EDO sing 153 n n C2 O2 EDO sing 154 n n C2 H21 EDO sing 155 n n C2 H22 EDO sing 156 n n O2 HO2 EDO sing 157 n n # _atom_sites.entry_id 6YG3 _atom_sites.fract_transf_matrix[1][1] 0.017191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 201 EDO EDO . C 2 EDO A 1 502 202 EDO EDO . D 2 EDO A 1 503 203 EDO EDO . E 2 EDO A 1 504 204 EDO EDO . F 2 EDO A 1 505 205 EDO EDO . G 2 EDO A 1 506 206 EDO EDO . H 2 EDO A 1 507 207 EDO EDO . I 2 EDO A 1 508 208 EDO EDO . J 2 EDO A 1 509 209 EDO EDO . K 3 6HF A 1 510 1 6HF XXX . L 4 HOH A 1 601 121 HOH HOH . L 4 HOH A 2 602 113 HOH HOH . L 4 HOH A 3 603 116 HOH HOH . L 4 HOH A 4 604 16 HOH HOH . L 4 HOH A 5 605 24 HOH HOH . L 4 HOH A 6 606 73 HOH HOH . L 4 HOH A 7 607 111 HOH HOH . L 4 HOH A 8 608 39 HOH HOH . L 4 HOH A 9 609 12 HOH HOH . L 4 HOH A 10 610 88 HOH HOH . L 4 HOH A 11 611 126 HOH HOH . L 4 HOH A 12 612 72 HOH HOH . L 4 HOH A 13 613 123 HOH HOH . L 4 HOH A 14 614 32 HOH HOH . L 4 HOH A 15 615 9 HOH HOH . L 4 HOH A 16 616 48 HOH HOH . L 4 HOH A 17 617 69 HOH HOH . L 4 HOH A 18 618 22 HOH HOH . L 4 HOH A 19 619 47 HOH HOH . L 4 HOH A 20 620 93 HOH HOH . L 4 HOH A 21 621 19 HOH HOH . L 4 HOH A 22 622 25 HOH HOH . L 4 HOH A 23 623 96 HOH HOH . L 4 HOH A 24 624 33 HOH HOH . L 4 HOH A 25 625 38 HOH HOH . L 4 HOH A 26 626 83 HOH HOH . L 4 HOH A 27 627 57 HOH HOH . L 4 HOH A 28 628 89 HOH HOH . L 4 HOH A 29 629 5 HOH HOH . L 4 HOH A 30 630 4 HOH HOH . L 4 HOH A 31 631 29 HOH HOH . L 4 HOH A 32 632 30 HOH HOH . L 4 HOH A 33 633 78 HOH HOH . L 4 HOH A 34 634 99 HOH HOH . L 4 HOH A 35 635 102 HOH HOH . L 4 HOH A 36 636 100 HOH HOH . L 4 HOH A 37 637 77 HOH HOH . L 4 HOH A 38 638 42 HOH HOH . L 4 HOH A 39 639 31 HOH HOH . L 4 HOH A 40 640 49 HOH HOH . L 4 HOH A 41 641 45 HOH HOH . L 4 HOH A 42 642 37 HOH HOH . L 4 HOH A 43 643 6 HOH HOH . L 4 HOH A 44 644 27 HOH HOH . L 4 HOH A 45 645 104 HOH HOH . L 4 HOH A 46 646 59 HOH HOH . L 4 HOH A 47 647 71 HOH HOH . L 4 HOH A 48 648 66 HOH HOH . L 4 HOH A 49 649 115 HOH HOH . L 4 HOH A 50 650 75 HOH HOH . L 4 HOH A 51 651 44 HOH HOH . L 4 HOH A 52 652 76 HOH HOH . L 4 HOH A 53 653 107 HOH HOH . L 4 HOH A 54 654 46 HOH HOH . L 4 HOH A 55 655 120 HOH HOH . L 4 HOH A 56 656 82 HOH HOH . L 4 HOH A 57 657 63 HOH HOH . L 4 HOH A 58 658 103 HOH HOH . L 4 HOH A 59 659 125 HOH HOH . L 4 HOH A 60 660 21 HOH HOH . L 4 HOH A 61 661 62 HOH HOH . L 4 HOH A 62 662 43 HOH HOH . L 4 HOH A 63 663 91 HOH HOH . L 4 HOH A 64 664 58 HOH HOH . L 4 HOH A 65 665 2 HOH HOH . L 4 HOH A 66 666 18 HOH HOH . L 4 HOH A 67 667 15 HOH HOH . L 4 HOH A 68 668 28 HOH HOH . L 4 HOH A 69 669 1 HOH HOH . L 4 HOH A 70 670 20 HOH HOH . L 4 HOH A 71 671 85 HOH HOH . L 4 HOH A 72 672 26 HOH HOH . L 4 HOH A 73 673 65 HOH HOH . L 4 HOH A 74 674 35 HOH HOH . L 4 HOH A 75 675 124 HOH HOH . L 4 HOH A 76 676 14 HOH HOH . L 4 HOH A 77 677 36 HOH HOH . L 4 HOH A 78 678 34 HOH HOH . L 4 HOH A 79 679 54 HOH HOH . L 4 HOH A 80 680 86 HOH HOH . L 4 HOH A 81 681 119 HOH HOH . L 4 HOH A 82 682 60 HOH HOH . L 4 HOH A 83 683 50 HOH HOH . L 4 HOH A 84 684 11 HOH HOH . L 4 HOH A 85 685 23 HOH HOH . L 4 HOH A 86 686 41 HOH HOH . L 4 HOH A 87 687 114 HOH HOH . L 4 HOH A 88 688 3 HOH HOH . L 4 HOH A 89 689 128 HOH HOH . L 4 HOH A 90 690 17 HOH HOH . L 4 HOH A 91 691 8 HOH HOH . L 4 HOH A 92 692 7 HOH HOH . L 4 HOH A 93 693 108 HOH HOH . L 4 HOH A 94 694 70 HOH HOH . L 4 HOH A 95 695 95 HOH HOH . L 4 HOH A 96 696 110 HOH HOH . L 4 HOH A 97 697 56 HOH HOH . L 4 HOH A 98 698 127 HOH HOH . L 4 HOH A 99 699 109 HOH HOH . L 4 HOH A 100 700 55 HOH HOH . L 4 HOH A 101 701 117 HOH HOH . L 4 HOH A 102 702 98 HOH HOH . L 4 HOH A 103 703 94 HOH HOH . L 4 HOH A 104 704 118 HOH HOH . L 4 HOH A 105 705 84 HOH HOH . L 4 HOH A 106 706 122 HOH HOH . L 4 HOH A 107 707 61 HOH HOH . L 4 HOH A 108 708 101 HOH HOH . L 4 HOH A 109 709 92 HOH HOH . L 4 HOH A 110 710 106 HOH HOH . L 4 HOH A 111 711 90 HOH HOH . L 4 HOH A 112 712 79 HOH HOH . L 4 HOH A 113 713 112 HOH HOH . L 4 HOH A 114 714 53 HOH HOH . L 4 HOH A 115 715 68 HOH HOH . L 4 HOH A 116 716 81 HOH HOH . L 4 HOH A 117 717 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 12.113 14.11 16.484 1 58.95 ? C1 EDO 505 A 1 HETATM 2 O O1 EDO . . . F 2 12.558 13.666 15.199 1 65.53 ? O1 EDO 505 A 1 HETATM 3 C C2 EDO . . . F 2 13.169 15.03 17.088 1 58.15 ? C2 EDO 505 A 1 HETATM 4 O O2 EDO . . . F 2 12.631 15.567 18.305 1 59.59 ? O2 EDO 505 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #