data_6YG3 # _model_server_result.job_id tuVJebT1Yo-UCL0R_qZtSg _model_server_result.datetime_utc '2024-11-24 06:13:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":510}' # _entry.id 6YG3 # _exptl.entry_id 6YG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.538 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-((2-((4-(4-methylpiperazin-1-yl)phenyl)amino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)acrylamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YG3 _cell.length_a 58.17 _cell.length_b 64.49 _cell.length_c 85.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 104 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 218 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id K _struct_conn.ptnr2_label_atom_id C30 _struct_conn.ptnr2_label_comp_id 6HF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 6HF _struct_conn.ptnr2_auth_seq_id 510 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.85 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H27 N7 O2' _chem_comp.formula_weight 469.538 _chem_comp.id 6HF _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-((2-((4-(4-methylpiperazin-1-yl)phenyl)amino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)acrylamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CPT-1691;N-{4-[(2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy]phenyl}prop-2-enamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 C30 6HF doub 1 n n C30 C29 6HF sing 2 n n C01 N02 6HF sing 3 n n C29 O32 6HF doub 4 n n C29 N28 6HF sing 5 n n N28 C27 6HF sing 6 n n N02 C05 6HF sing 7 n n N02 C03 6HF sing 8 n n C05 C06 6HF sing 9 n n C06 N07 6HF sing 10 n n C03 C04 6HF sing 11 n n C27 C33 6HF doub 12 n y C27 C26 6HF sing 13 n y C04 N07 6HF sing 14 n n C33 C34 6HF sing 15 n y N07 C08 6HF sing 16 n n C26 C25 6HF doub 17 n y C11 C08 6HF doub 18 n y C11 C12 6HF sing 19 n y C08 C09 6HF sing 20 n y C12 C13 6HF doub 21 n y C34 C24 6HF doub 22 n y C09 C10 6HF doub 23 n y C25 C24 6HF sing 24 n y C13 C10 6HF sing 25 n y C13 N14 6HF sing 26 n n C24 O23 6HF sing 27 n n N14 C15 6HF sing 28 n n N35 C15 6HF doub 29 n y N35 C22 6HF sing 30 n y C15 N16 6HF sing 31 n y O23 C22 6HF sing 32 n n C22 C18 6HF doub 33 n y N16 C17 6HF doub 34 n y C18 C17 6HF sing 35 n y C18 C19 6HF sing 36 n y C17 N21 6HF sing 37 n y C19 C20 6HF doub 38 n y N21 C20 6HF sing 39 n y C01 H012 6HF sing 40 n n C01 H011 6HF sing 41 n n C01 H013 6HF sing 42 n n C03 H032 6HF sing 43 n n C03 H031 6HF sing 44 n n C04 H042 6HF sing 45 n n C04 H041 6HF sing 46 n n C05 H051 6HF sing 47 n n C05 H052 6HF sing 48 n n C06 H062 6HF sing 49 n n C06 H061 6HF sing 50 n n C09 H091 6HF sing 51 n n C10 H101 6HF sing 52 n n C11 H111 6HF sing 53 n n C12 H121 6HF sing 54 n n N14 H141 6HF sing 55 n n C19 H191 6HF sing 56 n n C20 H201 6HF sing 57 n n N21 H211 6HF sing 58 n n C25 H251 6HF sing 59 n n C26 H261 6HF sing 60 n n N28 H281 6HF sing 61 n n C30 H301 6HF sing 62 n n C31 H312 6HF sing 63 n n C31 H311 6HF sing 64 n n C33 H331 6HF sing 65 n n C34 H341 6HF sing 66 n n # _atom_sites.entry_id 6YG3 _atom_sites.fract_transf_matrix[1][1] 0.017191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 201 EDO EDO . C 2 EDO A 1 502 202 EDO EDO . D 2 EDO A 1 503 203 EDO EDO . E 2 EDO A 1 504 204 EDO EDO . F 2 EDO A 1 505 205 EDO EDO . G 2 EDO A 1 506 206 EDO EDO . H 2 EDO A 1 507 207 EDO EDO . I 2 EDO A 1 508 208 EDO EDO . J 2 EDO A 1 509 209 EDO EDO . K 3 6HF A 1 510 1 6HF XXX . L 4 HOH A 1 601 121 HOH HOH . L 4 HOH A 2 602 113 HOH HOH . L 4 HOH A 3 603 116 HOH HOH . L 4 HOH A 4 604 16 HOH HOH . L 4 HOH A 5 605 24 HOH HOH . L 4 HOH A 6 606 73 HOH HOH . L 4 HOH A 7 607 111 HOH HOH . L 4 HOH A 8 608 39 HOH HOH . L 4 HOH A 9 609 12 HOH HOH . L 4 HOH A 10 610 88 HOH HOH . L 4 HOH A 11 611 126 HOH HOH . L 4 HOH A 12 612 72 HOH HOH . L 4 HOH A 13 613 123 HOH HOH . L 4 HOH A 14 614 32 HOH HOH . L 4 HOH A 15 615 9 HOH HOH . L 4 HOH A 16 616 48 HOH HOH . L 4 HOH A 17 617 69 HOH HOH . L 4 HOH A 18 618 22 HOH HOH . L 4 HOH A 19 619 47 HOH HOH . L 4 HOH A 20 620 93 HOH HOH . L 4 HOH A 21 621 19 HOH HOH . L 4 HOH A 22 622 25 HOH HOH . L 4 HOH A 23 623 96 HOH HOH . L 4 HOH A 24 624 33 HOH HOH . L 4 HOH A 25 625 38 HOH HOH . L 4 HOH A 26 626 83 HOH HOH . L 4 HOH A 27 627 57 HOH HOH . L 4 HOH A 28 628 89 HOH HOH . L 4 HOH A 29 629 5 HOH HOH . L 4 HOH A 30 630 4 HOH HOH . L 4 HOH A 31 631 29 HOH HOH . L 4 HOH A 32 632 30 HOH HOH . L 4 HOH A 33 633 78 HOH HOH . L 4 HOH A 34 634 99 HOH HOH . L 4 HOH A 35 635 102 HOH HOH . L 4 HOH A 36 636 100 HOH HOH . L 4 HOH A 37 637 77 HOH HOH . L 4 HOH A 38 638 42 HOH HOH . L 4 HOH A 39 639 31 HOH HOH . L 4 HOH A 40 640 49 HOH HOH . L 4 HOH A 41 641 45 HOH HOH . L 4 HOH A 42 642 37 HOH HOH . L 4 HOH A 43 643 6 HOH HOH . L 4 HOH A 44 644 27 HOH HOH . L 4 HOH A 45 645 104 HOH HOH . L 4 HOH A 46 646 59 HOH HOH . L 4 HOH A 47 647 71 HOH HOH . L 4 HOH A 48 648 66 HOH HOH . L 4 HOH A 49 649 115 HOH HOH . L 4 HOH A 50 650 75 HOH HOH . L 4 HOH A 51 651 44 HOH HOH . L 4 HOH A 52 652 76 HOH HOH . L 4 HOH A 53 653 107 HOH HOH . L 4 HOH A 54 654 46 HOH HOH . L 4 HOH A 55 655 120 HOH HOH . L 4 HOH A 56 656 82 HOH HOH . L 4 HOH A 57 657 63 HOH HOH . L 4 HOH A 58 658 103 HOH HOH . L 4 HOH A 59 659 125 HOH HOH . L 4 HOH A 60 660 21 HOH HOH . L 4 HOH A 61 661 62 HOH HOH . L 4 HOH A 62 662 43 HOH HOH . L 4 HOH A 63 663 91 HOH HOH . L 4 HOH A 64 664 58 HOH HOH . L 4 HOH A 65 665 2 HOH HOH . L 4 HOH A 66 666 18 HOH HOH . L 4 HOH A 67 667 15 HOH HOH . L 4 HOH A 68 668 28 HOH HOH . L 4 HOH A 69 669 1 HOH HOH . L 4 HOH A 70 670 20 HOH HOH . L 4 HOH A 71 671 85 HOH HOH . L 4 HOH A 72 672 26 HOH HOH . L 4 HOH A 73 673 65 HOH HOH . L 4 HOH A 74 674 35 HOH HOH . L 4 HOH A 75 675 124 HOH HOH . L 4 HOH A 76 676 14 HOH HOH . L 4 HOH A 77 677 36 HOH HOH . L 4 HOH A 78 678 34 HOH HOH . L 4 HOH A 79 679 54 HOH HOH . L 4 HOH A 80 680 86 HOH HOH . L 4 HOH A 81 681 119 HOH HOH . L 4 HOH A 82 682 60 HOH HOH . L 4 HOH A 83 683 50 HOH HOH . L 4 HOH A 84 684 11 HOH HOH . L 4 HOH A 85 685 23 HOH HOH . L 4 HOH A 86 686 41 HOH HOH . L 4 HOH A 87 687 114 HOH HOH . L 4 HOH A 88 688 3 HOH HOH . L 4 HOH A 89 689 128 HOH HOH . L 4 HOH A 90 690 17 HOH HOH . L 4 HOH A 91 691 8 HOH HOH . L 4 HOH A 92 692 7 HOH HOH . L 4 HOH A 93 693 108 HOH HOH . L 4 HOH A 94 694 70 HOH HOH . L 4 HOH A 95 695 95 HOH HOH . L 4 HOH A 96 696 110 HOH HOH . L 4 HOH A 97 697 56 HOH HOH . L 4 HOH A 98 698 127 HOH HOH . L 4 HOH A 99 699 109 HOH HOH . L 4 HOH A 100 700 55 HOH HOH . L 4 HOH A 101 701 117 HOH HOH . L 4 HOH A 102 702 98 HOH HOH . L 4 HOH A 103 703 94 HOH HOH . L 4 HOH A 104 704 118 HOH HOH . L 4 HOH A 105 705 84 HOH HOH . L 4 HOH A 106 706 122 HOH HOH . L 4 HOH A 107 707 61 HOH HOH . L 4 HOH A 108 708 101 HOH HOH . L 4 HOH A 109 709 92 HOH HOH . L 4 HOH A 110 710 106 HOH HOH . L 4 HOH A 111 711 90 HOH HOH . L 4 HOH A 112 712 79 HOH HOH . L 4 HOH A 113 713 112 HOH HOH . L 4 HOH A 114 714 53 HOH HOH . L 4 HOH A 115 715 68 HOH HOH . L 4 HOH A 116 716 81 HOH HOH . L 4 HOH A 117 717 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6HF . . . K 3 3.756 17.972 -0.462 1 74.21 ? C01 6HF 510 A 1 HETATM 2 N N02 6HF . . . K 3 5.187 18.258 -0.238 1 74.51 ? N02 6HF 510 A 1 HETATM 3 C C03 6HF . . . K 3 5.618 19.409 -1.028 1 65.01 ? C03 6HF 510 A 1 HETATM 4 C C04 6HF . . . K 3 7.091 19.672 -0.827 1 66.32 ? C04 6HF 510 A 1 HETATM 5 C C05 6HF . . . K 3 5.451 18.512 1.179 1 71.18 ? C05 6HF 510 A 1 HETATM 6 C C06 6HF . . . K 3 6.922 18.806 1.415 1 61.16 ? C06 6HF 510 A 1 HETATM 7 N N07 6HF . . . K 3 7.366 19.933 0.589 1 56.4 ? N07 6HF 510 A 1 HETATM 8 C C08 6HF . . . K 3 7.275 21.267 1.034 1 51.06 ? C08 6HF 510 A 1 HETATM 9 C C09 6HF . . . K 3 7.057 21.577 2.39 1 46.21 ? C09 6HF 510 A 1 HETATM 10 C C10 6HF . . . K 3 7.105 22.89 2.83 1 41.26 ? C10 6HF 510 A 1 HETATM 11 C C11 6HF . . . K 3 7.471 22.317 0.141 1 43.58 ? C11 6HF 510 A 1 HETATM 12 C C12 6HF . . . K 3 7.509 23.625 0.581 1 45.17 ? C12 6HF 510 A 1 HETATM 13 C C13 6HF . . . K 3 7.353 23.922 1.932 1 41.4 ? C13 6HF 510 A 1 HETATM 14 N N14 6HF . . . K 3 7.333 25.296 2.244 1 39.74 ? N14 6HF 510 A 1 HETATM 15 C C15 6HF . . . K 3 6.808 25.959 3.302 1 34.17 ? C15 6HF 510 A 1 HETATM 16 N N16 6HF . . . K 3 6.973 27.284 3.338 1 33.26 ? N16 6HF 510 A 1 HETATM 17 C C17 6HF . . . K 3 6.286 27.962 4.283 1 33.58 ? C17 6HF 510 A 1 HETATM 18 C C18 6HF . . . K 3 5.388 27.282 5.196 1 35.5 ? C18 6HF 510 A 1 HETATM 19 C C19 6HF . . . K 3 4.833 28.283 6.069 1 33.28 ? C19 6HF 510 A 1 HETATM 20 C C20 6HF . . . K 3 5.38 29.464 5.693 1 35.86 ? C20 6HF 510 A 1 HETATM 21 N N21 6HF . . . K 3 6.235 29.277 4.637 1 32.96 ? N21 6HF 510 A 1 HETATM 22 C C22 6HF . . . K 3 5.303 25.886 5.023 1 34.17 ? C22 6HF 510 A 1 HETATM 23 O O23 6HF . . . K 3 4.442 25.137 5.779 1 36.11 ? O23 6HF 510 A 1 HETATM 24 C C24 6HF . . . K 3 4.854 23.864 6.145 1 38.14 ? C24 6HF 510 A 1 HETATM 25 C C25 6HF . . . K 3 5.711 23.714 7.225 1 38.33 ? C25 6HF 510 A 1 HETATM 26 C C26 6HF . . . K 3 6.313 22.492 7.46 1 40.44 ? C26 6HF 510 A 1 HETATM 27 C C27 6HF . . . K 3 6.095 21.429 6.595 1 42.17 ? C27 6HF 510 A 1 HETATM 28 N N28 6HF . . . K 3 6.903 20.287 6.778 1 43.24 ? N28 6HF 510 A 1 HETATM 29 C C29 6HF . . . K 3 7.002 19.18 6.005 1 45.8 ? C29 6HF 510 A 1 HETATM 30 C C30 6HF . . . K 3 8.107 18.234 6.404 1 40.75 ? C30 6HF 510 A 1 HETATM 31 O O32 6HF . . . K 3 6.34 19.019 4.976 1 47.11 ? O32 6HF 510 A 1 HETATM 32 C C33 6HF . . . K 3 5.171 21.571 5.555 1 42.13 ? C33 6HF 510 A 1 HETATM 33 C C34 6HF . . . K 3 4.542 22.783 5.342 1 38.51 ? C34 6HF 510 A 1 HETATM 34 N N35 6HF . . . K 3 6.016 25.237 4.114 1 35.67 ? N35 6HF 510 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #