data_6YG4 # _model_server_result.job_id T79s4tW8OAFnW3E1PvFPxQ _model_server_result.datetime_utc '2024-11-24 03:38:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6YG4 # _exptl.entry_id 6YG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YG4 _cell.length_a 54.1 _cell.length_b 72.63 _cell.length_c 83.079 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 103 A THR 217 1_555 A N CSD 104 A CSD 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C CSD 104 A CSD 218 1_555 A N ALA 105 A ALA 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 A C LEU 161 A LEU 275 1_555 A N CSO 162 A CSO 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C CSO 162 A CSO 276 1_555 A N ASP 163 A ASP 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 112 n n C1 C2 EDO sing 113 n n C1 H11 EDO sing 114 n n C1 H12 EDO sing 115 n n O1 HO1 EDO sing 116 n n C2 O2 EDO sing 117 n n C2 H21 EDO sing 118 n n C2 H22 EDO sing 119 n n O2 HO2 EDO sing 120 n n # _atom_sites.entry_id 6YG4 _atom_sites.fract_transf_matrix[1][1] 0.018484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 101 EDO EDO . C 2 EDO A 1 502 102 EDO EDO . D 2 EDO A 1 503 103 EDO EDO . E 2 EDO A 1 504 104 EDO EDO . F 2 EDO A 1 505 105 EDO EDO . G 2 EDO A 1 506 106 EDO EDO . H 3 SU9 A 1 507 1 SU9 XXX . I 4 HOH A 1 601 38 HOH HOH . I 4 HOH A 2 602 30 HOH HOH . I 4 HOH A 3 603 18 HOH HOH . I 4 HOH A 4 604 11 HOH HOH . I 4 HOH A 5 605 14 HOH HOH . I 4 HOH A 6 606 24 HOH HOH . I 4 HOH A 7 607 9 HOH HOH . I 4 HOH A 8 608 12 HOH HOH . I 4 HOH A 9 609 34 HOH HOH . I 4 HOH A 10 610 22 HOH HOH . I 4 HOH A 11 611 2 HOH HOH . I 4 HOH A 12 612 35 HOH HOH . I 4 HOH A 13 613 8 HOH HOH . I 4 HOH A 14 614 28 HOH HOH . I 4 HOH A 15 615 15 HOH HOH . I 4 HOH A 16 616 1 HOH HOH . I 4 HOH A 17 617 4 HOH HOH . I 4 HOH A 18 618 36 HOH HOH . I 4 HOH A 19 619 6 HOH HOH . I 4 HOH A 20 620 20 HOH HOH . I 4 HOH A 21 621 37 HOH HOH . I 4 HOH A 22 622 16 HOH HOH . I 4 HOH A 23 623 7 HOH HOH . I 4 HOH A 24 624 31 HOH HOH . I 4 HOH A 25 625 19 HOH HOH . I 4 HOH A 26 626 29 HOH HOH . I 4 HOH A 27 627 3 HOH HOH . I 4 HOH A 28 628 26 HOH HOH . I 4 HOH A 29 629 39 HOH HOH . I 4 HOH A 30 630 25 HOH HOH . I 4 HOH A 31 631 21 HOH HOH . I 4 HOH A 32 632 27 HOH HOH . I 4 HOH A 33 633 33 HOH HOH . I 4 HOH A 34 634 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 -11.183 18.813 16.211 1 92.79 ? C1 EDO 505 A 1 HETATM 2 O O1 EDO . . . F 2 -10.782 20.063 16.744 1 84.96 ? O1 EDO 505 A 1 HETATM 3 C C2 EDO . . . F 2 -11.393 17.785 17.263 1 97.37 ? C2 EDO 505 A 1 HETATM 4 O O2 EDO . . . F 2 -10.275 17.631 18.131 1 100.35 ? O2 EDO 505 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #