data_6YG6 # _model_server_result.job_id WJ0CCL7MdKMl9FO6m4LchQ _model_server_result.datetime_utc '2024-11-13 10:40:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yg6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6YG6 # _exptl.entry_id 6YG6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.36 _cell.angle_gamma 90 _cell.entry_id 6YG6 _cell.length_a 72.651 _cell.length_b 69.934 _cell.length_c 73.763 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 182 A CYS 296 1_555 A SG CYS 227 A CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 182 B CYS 296 1_555 B SG CYS 227 B CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 A SG CYS 104 A CYS 218 1_555 D C29 OQ8 . A OQ8 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? covale ? covale2 B SG CYS 104 B CYS 218 1_555 H C29 OQ8 . B OQ8 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6YG6 _atom_sites.fract_transf_matrix[1][1] 0.013764 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007744 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 501 204 EDO EDO . D 3 OQ8 A 1 502 1 OQ8 XXX . E 2 EDO B 1 501 201 EDO EDO . F 2 EDO B 1 502 202 EDO EDO . G 2 EDO B 1 503 203 EDO EDO . H 3 OQ8 B 1 504 2 OQ8 XXX . I 4 HOH A 1 601 138 HOH HOH . I 4 HOH A 2 602 31 HOH HOH . I 4 HOH A 3 603 10 HOH HOH . I 4 HOH A 4 604 137 HOH HOH . I 4 HOH A 5 605 143 HOH HOH . I 4 HOH A 6 606 128 HOH HOH . I 4 HOH A 7 607 80 HOH HOH . I 4 HOH A 8 608 67 HOH HOH . I 4 HOH A 9 609 77 HOH HOH . I 4 HOH A 10 610 113 HOH HOH . I 4 HOH A 11 611 59 HOH HOH . I 4 HOH A 12 612 89 HOH HOH . I 4 HOH A 13 613 167 HOH HOH . I 4 HOH A 14 614 22 HOH HOH . I 4 HOH A 15 615 129 HOH HOH . I 4 HOH A 16 616 82 HOH HOH . I 4 HOH A 17 617 14 HOH HOH . I 4 HOH A 18 618 103 HOH HOH . I 4 HOH A 19 619 52 HOH HOH . I 4 HOH A 20 620 12 HOH HOH . I 4 HOH A 21 621 69 HOH HOH . I 4 HOH A 22 622 44 HOH HOH . I 4 HOH A 23 623 66 HOH HOH . I 4 HOH A 24 624 4 HOH HOH . I 4 HOH A 25 625 15 HOH HOH . I 4 HOH A 26 626 27 HOH HOH . I 4 HOH A 27 627 118 HOH HOH . I 4 HOH A 28 628 81 HOH HOH . I 4 HOH A 29 629 32 HOH HOH . I 4 HOH A 30 630 35 HOH HOH . I 4 HOH A 31 631 29 HOH HOH . I 4 HOH A 32 632 43 HOH HOH . I 4 HOH A 33 633 45 HOH HOH . I 4 HOH A 34 634 130 HOH HOH . I 4 HOH A 35 635 180 HOH HOH . I 4 HOH A 36 636 124 HOH HOH . I 4 HOH A 37 637 136 HOH HOH . I 4 HOH A 38 638 90 HOH HOH . I 4 HOH A 39 639 6 HOH HOH . I 4 HOH A 40 640 26 HOH HOH . I 4 HOH A 41 641 104 HOH HOH . I 4 HOH A 42 642 49 HOH HOH . I 4 HOH A 43 643 132 HOH HOH . I 4 HOH A 44 644 30 HOH HOH . I 4 HOH A 45 645 79 HOH HOH . I 4 HOH A 46 646 70 HOH HOH . I 4 HOH A 47 647 100 HOH HOH . I 4 HOH A 48 648 121 HOH HOH . I 4 HOH A 49 649 24 HOH HOH . I 4 HOH A 50 650 48 HOH HOH . I 4 HOH A 51 651 107 HOH HOH . I 4 HOH A 52 652 117 HOH HOH . I 4 HOH A 53 653 109 HOH HOH . I 4 HOH A 54 654 102 HOH HOH . I 4 HOH A 55 655 58 HOH HOH . I 4 HOH A 56 656 54 HOH HOH . I 4 HOH A 57 657 181 HOH HOH . I 4 HOH A 58 658 83 HOH HOH . I 4 HOH A 59 659 55 HOH HOH . I 4 HOH A 60 660 42 HOH HOH . I 4 HOH A 61 661 139 HOH HOH . I 4 HOH A 62 662 115 HOH HOH . I 4 HOH A 63 663 114 HOH HOH . I 4 HOH A 64 664 5 HOH HOH . I 4 HOH A 65 665 134 HOH HOH . I 4 HOH A 66 666 123 HOH HOH . I 4 HOH A 67 667 47 HOH HOH . I 4 HOH A 68 668 86 HOH HOH . I 4 HOH A 69 669 46 HOH HOH . I 4 HOH A 70 670 72 HOH HOH . I 4 HOH A 71 671 140 HOH HOH . I 4 HOH A 72 672 60 HOH HOH . I 4 HOH A 73 673 166 HOH HOH . I 4 HOH A 74 674 65 HOH HOH . I 4 HOH A 75 675 133 HOH HOH . I 4 HOH A 76 676 21 HOH HOH . I 4 HOH A 77 677 23 HOH HOH . I 4 HOH A 78 678 175 HOH HOH . I 4 HOH A 79 679 131 HOH HOH . I 4 HOH A 80 680 106 HOH HOH . I 4 HOH A 81 681 135 HOH HOH . I 4 HOH A 82 682 3 HOH HOH . I 4 HOH A 83 683 13 HOH HOH . I 4 HOH A 84 684 122 HOH HOH . I 4 HOH A 85 685 95 HOH HOH . I 4 HOH A 86 686 9 HOH HOH . I 4 HOH A 87 687 110 HOH HOH . I 4 HOH A 88 688 174 HOH HOH . I 4 HOH A 89 689 125 HOH HOH . I 4 HOH A 90 690 165 HOH HOH . I 4 HOH A 91 691 126 HOH HOH . I 4 HOH A 92 692 120 HOH HOH . I 4 HOH A 93 693 111 HOH HOH . I 4 HOH A 94 694 105 HOH HOH . I 4 HOH A 95 695 87 HOH HOH . I 4 HOH A 96 696 127 HOH HOH . I 4 HOH A 97 697 112 HOH HOH . I 4 HOH A 98 698 99 HOH HOH . I 4 HOH A 99 699 53 HOH HOH . I 4 HOH A 100 700 96 HOH HOH . I 4 HOH A 101 701 119 HOH HOH . I 4 HOH A 102 702 50 HOH HOH . J 4 HOH B 1 601 172 HOH HOH . J 4 HOH B 2 602 154 HOH HOH . J 4 HOH B 3 603 163 HOH HOH . J 4 HOH B 4 604 159 HOH HOH . J 4 HOH B 5 605 37 HOH HOH . J 4 HOH B 6 606 116 HOH HOH . J 4 HOH B 7 607 17 HOH HOH . J 4 HOH B 8 608 71 HOH HOH . J 4 HOH B 9 609 84 HOH HOH . J 4 HOH B 10 610 18 HOH HOH . J 4 HOH B 11 611 63 HOH HOH . J 4 HOH B 12 612 171 HOH HOH . J 4 HOH B 13 613 157 HOH HOH . J 4 HOH B 14 614 144 HOH HOH . J 4 HOH B 15 615 16 HOH HOH . J 4 HOH B 16 616 161 HOH HOH . J 4 HOH B 17 617 20 HOH HOH . J 4 HOH B 18 618 85 HOH HOH . J 4 HOH B 19 619 173 HOH HOH . J 4 HOH B 20 620 101 HOH HOH . J 4 HOH B 21 621 61 HOH HOH . J 4 HOH B 22 622 147 HOH HOH . J 4 HOH B 23 623 162 HOH HOH . J 4 HOH B 24 624 19 HOH HOH . J 4 HOH B 25 625 51 HOH HOH . J 4 HOH B 26 626 91 HOH HOH . J 4 HOH B 27 627 7 HOH HOH . J 4 HOH B 28 628 57 HOH HOH . J 4 HOH B 29 629 160 HOH HOH . J 4 HOH B 30 630 25 HOH HOH . J 4 HOH B 31 631 98 HOH HOH . J 4 HOH B 32 632 153 HOH HOH . J 4 HOH B 33 633 78 HOH HOH . J 4 HOH B 34 634 176 HOH HOH . J 4 HOH B 35 635 156 HOH HOH . J 4 HOH B 36 636 73 HOH HOH . J 4 HOH B 37 637 75 HOH HOH . J 4 HOH B 38 638 68 HOH HOH . J 4 HOH B 39 639 168 HOH HOH . J 4 HOH B 40 640 36 HOH HOH . J 4 HOH B 41 641 33 HOH HOH . J 4 HOH B 42 642 39 HOH HOH . J 4 HOH B 43 643 56 HOH HOH . J 4 HOH B 44 644 34 HOH HOH . J 4 HOH B 45 645 158 HOH HOH . J 4 HOH B 46 646 93 HOH HOH . J 4 HOH B 47 647 169 HOH HOH . J 4 HOH B 48 648 182 HOH HOH . J 4 HOH B 49 649 11 HOH HOH . J 4 HOH B 50 650 146 HOH HOH . J 4 HOH B 51 651 76 HOH HOH . J 4 HOH B 52 652 164 HOH HOH . J 4 HOH B 53 653 141 HOH HOH . J 4 HOH B 54 654 145 HOH HOH . J 4 HOH B 55 655 178 HOH HOH . J 4 HOH B 56 656 149 HOH HOH . J 4 HOH B 57 657 170 HOH HOH . J 4 HOH B 58 658 8 HOH HOH . J 4 HOH B 59 659 179 HOH HOH . J 4 HOH B 60 660 94 HOH HOH . J 4 HOH B 61 661 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 -46.554 12.906 1.965 1 54.25 ? C1 EDO 501 B 1 HETATM 2 O O1 EDO . . . E 2 -45.198 13.208 1.59 1 51.49 ? O1 EDO 501 B 1 HETATM 3 C C2 EDO . . . E 2 -46.789 13.277 3.417 1 54.38 ? C2 EDO 501 B 1 HETATM 4 O O2 EDO . . . E 2 -45.825 12.585 4.22 1 58.56 ? O2 EDO 501 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 4 #