data_6YG7 # _model_server_result.job_id oGrC5nIU0ZUIJu2Uzl610A _model_server_result.datetime_utc '2024-11-13 10:37:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 6YG7 # _exptl.entry_id 6YG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.92 _cell.angle_gamma 90 _cell.entry_id 6YG7 _cell.length_a 72.07 _cell.length_b 69.24 _cell.length_c 72.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 182 A CYS 296 1_555 A SG CYS 227 A CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 182 B CYS 296 1_555 B SG CYS 227 B CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? covale ? covale1 A SG CYS 104 A CYS 218 1_555 F C24 OQ2 . A OQ2 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? covale ? covale2 B SG CYS 104 B CYS 218 1_555 G C24 OQ2 . B OQ2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6YG7 _atom_sites.fract_transf_matrix[1][1] 0.013875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007353 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015664 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 501 201 EDO EDO . D 2 EDO A 1 502 202 EDO EDO . E 2 EDO A 1 503 203 EDO EDO . F 3 OQ2 A 1 504 1 OQ2 XXX . G 3 OQ2 B 1 501 2 OQ2 XXX . H 4 HOH A 1 601 71 HOH HOH . H 4 HOH A 2 602 63 HOH HOH . H 4 HOH A 3 603 11 HOH HOH . H 4 HOH A 4 604 56 HOH HOH . H 4 HOH A 5 605 72 HOH HOH . H 4 HOH A 6 606 74 HOH HOH . H 4 HOH A 7 607 91 HOH HOH . H 4 HOH A 8 608 41 HOH HOH . H 4 HOH A 9 609 7 HOH HOH . H 4 HOH A 10 610 59 HOH HOH . H 4 HOH A 11 611 75 HOH HOH . H 4 HOH A 12 612 18 HOH HOH . H 4 HOH A 13 613 27 HOH HOH . H 4 HOH A 14 614 64 HOH HOH . H 4 HOH A 15 615 70 HOH HOH . H 4 HOH A 16 616 76 HOH HOH . H 4 HOH A 17 617 36 HOH HOH . H 4 HOH A 18 618 17 HOH HOH . H 4 HOH A 19 619 39 HOH HOH . H 4 HOH A 20 620 43 HOH HOH . H 4 HOH A 21 621 49 HOH HOH . H 4 HOH A 22 622 15 HOH HOH . H 4 HOH A 23 623 5 HOH HOH . H 4 HOH A 24 624 3 HOH HOH . H 4 HOH A 25 625 62 HOH HOH . H 4 HOH A 26 626 73 HOH HOH . H 4 HOH A 27 627 65 HOH HOH . H 4 HOH A 28 628 66 HOH HOH . H 4 HOH A 29 629 26 HOH HOH . H 4 HOH A 30 630 25 HOH HOH . H 4 HOH A 31 631 47 HOH HOH . H 4 HOH A 32 632 68 HOH HOH . H 4 HOH A 33 633 69 HOH HOH . H 4 HOH A 34 634 61 HOH HOH . H 4 HOH A 35 635 42 HOH HOH . H 4 HOH A 36 636 58 HOH HOH . H 4 HOH A 37 637 60 HOH HOH . I 4 HOH B 1 601 87 HOH HOH . I 4 HOH B 2 602 88 HOH HOH . I 4 HOH B 3 603 21 HOH HOH . I 4 HOH B 4 604 92 HOH HOH . I 4 HOH B 5 605 79 HOH HOH . I 4 HOH B 6 606 4 HOH HOH . I 4 HOH B 7 607 10 HOH HOH . I 4 HOH B 8 608 16 HOH HOH . I 4 HOH B 9 609 22 HOH HOH . I 4 HOH B 10 610 90 HOH HOH . I 4 HOH B 11 611 51 HOH HOH . I 4 HOH B 12 612 89 HOH HOH . I 4 HOH B 13 613 50 HOH HOH . I 4 HOH B 14 614 23 HOH HOH . I 4 HOH B 15 615 28 HOH HOH . I 4 HOH B 16 616 77 HOH HOH . I 4 HOH B 17 617 38 HOH HOH . I 4 HOH B 18 618 45 HOH HOH . I 4 HOH B 19 619 13 HOH HOH . I 4 HOH B 20 620 82 HOH HOH . I 4 HOH B 21 621 19 HOH HOH . I 4 HOH B 22 622 33 HOH HOH . I 4 HOH B 23 623 1 HOH HOH . I 4 HOH B 24 624 80 HOH HOH . I 4 HOH B 25 625 86 HOH HOH . I 4 HOH B 26 626 8 HOH HOH . I 4 HOH B 27 627 93 HOH HOH . I 4 HOH B 28 628 83 HOH HOH . I 4 HOH B 29 629 57 HOH HOH . I 4 HOH B 30 630 37 HOH HOH . I 4 HOH B 31 631 85 HOH HOH . I 4 HOH B 32 632 78 HOH HOH . I 4 HOH B 33 633 84 HOH HOH . I 4 HOH B 34 634 40 HOH HOH . I 4 HOH B 35 635 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 2.022 9.449 -10.811 1 49.06 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . E 2 1.023 8.787 -10.019 1 51.31 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . E 2 3.329 9.476 -10.022 1 50.63 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . E 2 3.054 9.611 -8.609 1 48.17 ? O2 EDO 503 A 1 # _model_server_stats.io_time_ms 112 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #