data_6YG7 # _model_server_result.job_id wsSTdODFAV_pdm_5AqSJ0A _model_server_result.datetime_utc '2024-11-22 05:17:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 6YG7 # _exptl.entry_id 6YG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 639.711 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[4-[(4-ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]-4-methyl-3-[2-[[(3~{R})-1-propanoylpyrrolidin-3-yl]amino]pyrimidin-4-yl]oxy-benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.92 _cell.angle_gamma 90 _cell.entry_id 6YG7 _cell.length_a 72.07 _cell.length_b 69.24 _cell.length_c 72.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 182 A CYS 296 1_555 A SG CYS 227 A CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 182 B CYS 296 1_555 B SG CYS 227 B CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? covale ? covale1 A SG CYS 104 A CYS 218 1_555 F C24 OQ2 . A OQ2 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? covale ? covale2 B SG CYS 104 B CYS 218 1_555 G C24 OQ2 . B OQ2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? # _chem_comp.formula 'C33 H40 F3 N7 O3' _chem_comp.formula_weight 639.711 _chem_comp.id OQ2 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[4-[(4-ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]-4-methyl-3-[2-[[(3~{R})-1-propanoylpyrrolidin-3-yl]amino]pyrimidin-4-yl]oxy-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 OQ2 sing 246 n n C23 C22 OQ2 sing 247 n n C19 N4 OQ2 sing 248 n n C19 C18 OQ2 sing 249 n n C22 O2 OQ2 doub 250 n n C22 N4 OQ2 sing 251 n n N4 C20 OQ2 sing 252 n n C18 N3 OQ2 sing 253 n n C18 C21 OQ2 sing 254 n n N3 C17 OQ2 sing 255 n n C20 C21 OQ2 sing 256 n n N1 C17 OQ2 doub 257 n y N1 C16 OQ2 sing 258 n y C17 N2 OQ2 sing 259 n y N2 C14 OQ2 doub 260 n y C16 C15 OQ2 doub 261 n y C14 C15 OQ2 sing 262 n y C14 O1 OQ2 sing 263 n n O1 C12 OQ2 sing 264 n n C12 C13 OQ2 doub 265 n y C12 C11 OQ2 sing 266 n y C13 C8 OQ2 sing 267 n y C25 C11 OQ2 sing 268 n n O C7 OQ2 doub 269 n n C11 C10 OQ2 doub 270 n y F2 C2 OQ2 sing 271 n n C8 C7 OQ2 sing 272 n n C8 C9 OQ2 doub 273 n y C7 N OQ2 sing 274 n n F1 C2 OQ2 sing 275 n n C2 F OQ2 sing 276 n n C2 C1 OQ2 sing 277 n n C10 C9 OQ2 sing 278 n y C6 C1 OQ2 doub 279 n y C6 C5 OQ2 sing 280 n y N C5 OQ2 sing 281 n n C1 C OQ2 sing 282 n y C5 C4 OQ2 doub 283 n y C C3 OQ2 doub 284 n y C C26 OQ2 sing 285 n n C4 C3 OQ2 sing 286 n y C26 N5 OQ2 sing 287 n n C30 C29 OQ2 sing 288 n n C30 N6 OQ2 sing 289 n n C29 N5 OQ2 sing 290 n n N5 C27 OQ2 sing 291 n n N6 C28 OQ2 sing 292 n n N6 C31 OQ2 sing 293 n n C27 C28 OQ2 sing 294 n n C31 C32 OQ2 sing 295 n n C4 H1 OQ2 sing 296 n n C6 H2 OQ2 sing 297 n n C9 H3 OQ2 sing 298 n n C10 H4 OQ2 sing 299 n n N3 H5 OQ2 sing 300 n n C13 H6 OQ2 sing 301 n n C15 H7 OQ2 sing 302 n n C23 H8 OQ2 sing 303 n n C23 H9 OQ2 sing 304 n n C24 H10 OQ2 sing 305 n n C24 H11 OQ2 sing 306 n n C24 H12 OQ2 sing 307 n n C19 H13 OQ2 sing 308 n n C19 H14 OQ2 sing 309 n n C20 H15 OQ2 sing 310 n n C20 H16 OQ2 sing 311 n n C21 H17 OQ2 sing 312 n n C21 H18 OQ2 sing 313 n n C18 H19 OQ2 sing 314 n n C16 H20 OQ2 sing 315 n n C25 H21 OQ2 sing 316 n n C25 H22 OQ2 sing 317 n n C25 H23 OQ2 sing 318 n n N H24 OQ2 sing 319 n n C3 H25 OQ2 sing 320 n n C26 H26 OQ2 sing 321 n n C26 H27 OQ2 sing 322 n n C29 H29 OQ2 sing 323 n n C29 H30 OQ2 sing 324 n n C30 H31 OQ2 sing 325 n n C30 H32 OQ2 sing 326 n n C31 H34 OQ2 sing 327 n n C31 H35 OQ2 sing 328 n n C32 H36 OQ2 sing 329 n n C32 H37 OQ2 sing 330 n n C32 H38 OQ2 sing 331 n n C28 H39 OQ2 sing 332 n n C28 H40 OQ2 sing 333 n n C27 H41 OQ2 sing 334 n n C27 H42 OQ2 sing 335 n n # _atom_sites.entry_id 6YG7 _atom_sites.fract_transf_matrix[1][1] 0.013875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007353 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015664 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 501 201 EDO EDO . D 2 EDO A 1 502 202 EDO EDO . E 2 EDO A 1 503 203 EDO EDO . F 3 OQ2 A 1 504 1 OQ2 XXX . G 3 OQ2 B 1 501 2 OQ2 XXX . H 4 HOH A 1 601 71 HOH HOH . H 4 HOH A 2 602 63 HOH HOH . H 4 HOH A 3 603 11 HOH HOH . H 4 HOH A 4 604 56 HOH HOH . H 4 HOH A 5 605 72 HOH HOH . H 4 HOH A 6 606 74 HOH HOH . H 4 HOH A 7 607 91 HOH HOH . H 4 HOH A 8 608 41 HOH HOH . H 4 HOH A 9 609 7 HOH HOH . H 4 HOH A 10 610 59 HOH HOH . H 4 HOH A 11 611 75 HOH HOH . H 4 HOH A 12 612 18 HOH HOH . H 4 HOH A 13 613 27 HOH HOH . H 4 HOH A 14 614 64 HOH HOH . H 4 HOH A 15 615 70 HOH HOH . H 4 HOH A 16 616 76 HOH HOH . H 4 HOH A 17 617 36 HOH HOH . H 4 HOH A 18 618 17 HOH HOH . H 4 HOH A 19 619 39 HOH HOH . H 4 HOH A 20 620 43 HOH HOH . H 4 HOH A 21 621 49 HOH HOH . H 4 HOH A 22 622 15 HOH HOH . H 4 HOH A 23 623 5 HOH HOH . H 4 HOH A 24 624 3 HOH HOH . H 4 HOH A 25 625 62 HOH HOH . H 4 HOH A 26 626 73 HOH HOH . H 4 HOH A 27 627 65 HOH HOH . H 4 HOH A 28 628 66 HOH HOH . H 4 HOH A 29 629 26 HOH HOH . H 4 HOH A 30 630 25 HOH HOH . H 4 HOH A 31 631 47 HOH HOH . H 4 HOH A 32 632 68 HOH HOH . H 4 HOH A 33 633 69 HOH HOH . H 4 HOH A 34 634 61 HOH HOH . H 4 HOH A 35 635 42 HOH HOH . H 4 HOH A 36 636 58 HOH HOH . H 4 HOH A 37 637 60 HOH HOH . I 4 HOH B 1 601 87 HOH HOH . I 4 HOH B 2 602 88 HOH HOH . I 4 HOH B 3 603 21 HOH HOH . I 4 HOH B 4 604 92 HOH HOH . I 4 HOH B 5 605 79 HOH HOH . I 4 HOH B 6 606 4 HOH HOH . I 4 HOH B 7 607 10 HOH HOH . I 4 HOH B 8 608 16 HOH HOH . I 4 HOH B 9 609 22 HOH HOH . I 4 HOH B 10 610 90 HOH HOH . I 4 HOH B 11 611 51 HOH HOH . I 4 HOH B 12 612 89 HOH HOH . I 4 HOH B 13 613 50 HOH HOH . I 4 HOH B 14 614 23 HOH HOH . I 4 HOH B 15 615 28 HOH HOH . I 4 HOH B 16 616 77 HOH HOH . I 4 HOH B 17 617 38 HOH HOH . I 4 HOH B 18 618 45 HOH HOH . I 4 HOH B 19 619 13 HOH HOH . I 4 HOH B 20 620 82 HOH HOH . I 4 HOH B 21 621 19 HOH HOH . I 4 HOH B 22 622 33 HOH HOH . I 4 HOH B 23 623 1 HOH HOH . I 4 HOH B 24 624 80 HOH HOH . I 4 HOH B 25 625 86 HOH HOH . I 4 HOH B 26 626 8 HOH HOH . I 4 HOH B 27 627 93 HOH HOH . I 4 HOH B 28 628 83 HOH HOH . I 4 HOH B 29 629 57 HOH HOH . I 4 HOH B 30 630 37 HOH HOH . I 4 HOH B 31 631 85 HOH HOH . I 4 HOH B 32 632 78 HOH HOH . I 4 HOH B 33 633 84 HOH HOH . I 4 HOH B 34 634 40 HOH HOH . I 4 HOH B 35 635 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 OQ2 . . . F 3 10.801 -3.341 18.016 1 44.6 ? C4 OQ2 504 A 1 HETATM 2 C C5 OQ2 . . . F 3 10.48 -3.787 16.747 1 44.75 ? C5 OQ2 504 A 1 HETATM 3 C C6 OQ2 . . . F 3 9.571 -3.054 15.977 1 40.39 ? C6 OQ2 504 A 1 HETATM 4 N N1 OQ2 . . . F 3 11.673 -9.85 8.873 1 39.07 ? N1 OQ2 504 A 1 HETATM 5 C C7 OQ2 . . . F 3 11.277 -5.416 15.052 1 41.42 ? C7 OQ2 504 A 1 HETATM 6 C C8 OQ2 . . . F 3 11.912 -6.762 14.877 1 41.05 ? C8 OQ2 504 A 1 HETATM 7 N N2 OQ2 . . . F 3 13.706 -9.223 9.953 1 41.95 ? N2 OQ2 504 A 1 HETATM 8 C C9 OQ2 . . . F 3 12.099 -7.694 15.895 1 42.59 ? C9 OQ2 504 A 1 HETATM 9 C C10 OQ2 . . . F 3 12.739 -8.891 15.633 1 40.28 ? C10 OQ2 504 A 1 HETATM 10 C C11 OQ2 . . . F 3 13.213 -9.196 14.366 1 38.31 ? C11 OQ2 504 A 1 HETATM 11 C C12 OQ2 . . . F 3 13.041 -8.24 13.358 1 37.94 ? C12 OQ2 504 A 1 HETATM 12 N N3 OQ2 . . . F 3 13.64 -9.822 7.725 1 51.54 ? N3 OQ2 504 A 1 HETATM 13 C C13 OQ2 . . . F 3 12.374 -7.058 13.597 1 36.95 ? C13 OQ2 504 A 1 HETATM 14 C C14 OQ2 . . . F 3 12.999 -8.93 11.039 1 38.98 ? C14 OQ2 504 A 1 HETATM 15 C C15 OQ2 . . . F 3 11.611 -9.049 11.135 1 36.95 ? C15 OQ2 504 A 1 HETATM 16 N N4 OQ2 . . . F 3 16.731 -8.026 7.175 1 68.87 ? N4 OQ2 504 A 1 HETATM 17 O O2 OQ2 . . . F 3 18.591 -6.759 7.172 1 71.05 ? O2 OQ2 504 A 1 HETATM 18 C C22 OQ2 . . . F 3 17.412 -6.894 6.884 1 68 ? C22 OQ2 504 A 1 HETATM 19 C C23 OQ2 . . . F 3 16.672 -5.81 6.129 1 66.58 ? C23 OQ2 504 A 1 HETATM 20 C C24 OQ2 . . . F 3 17.479 -4.503 5.893 1 56.71 ? C24 OQ2 504 A 1 HETATM 21 C C19 OQ2 . . . F 3 15.347 -8.305 6.758 1 68.05 ? C19 OQ2 504 A 1 HETATM 22 C C20 OQ2 . . . F 3 17.306 -9.126 7.967 1 68.94 ? C20 OQ2 504 A 1 HETATM 23 C C21 OQ2 . . . F 3 16.084 -9.916 8.42 1 66.81 ? C21 OQ2 504 A 1 HETATM 24 C C18 OQ2 . . . F 3 15.043 -9.693 7.303 1 60.1 ? C18 OQ2 504 A 1 HETATM 25 C C17 OQ2 . . . F 3 12.995 -9.651 8.904 1 41.13 ? C17 OQ2 504 A 1 HETATM 26 C C16 OQ2 . . . F 3 11.013 -9.519 9.988 1 36.55 ? C16 OQ2 504 A 1 HETATM 27 O O1 OQ2 . . . F 3 13.668 -8.454 12.13 1 39.76 ? O1 OQ2 504 A 1 HETATM 28 C C25 OQ2 . . . F 3 13.828 -10.534 14.072 1 39.12 ? C25 OQ2 504 A 1 HETATM 29 O O OQ2 . . . F 3 10.911 -4.776 14.077 1 44.24 ? O OQ2 504 A 1 HETATM 30 N N OQ2 . . . F 3 11.216 -4.922 16.306 1 40.1 ? N OQ2 504 A 1 HETATM 31 C C1 OQ2 . . . F 3 8.975 -1.888 16.47 1 44.19 ? C1 OQ2 504 A 1 HETATM 32 C C2 OQ2 . . . F 3 8.014 -1.178 15.527 1 48.49 ? C2 OQ2 504 A 1 HETATM 33 F F2 OQ2 . . . F 3 7.743 -1.87 14.422 1 46.6 ? F2 OQ2 504 A 1 HETATM 34 F F1 OQ2 . . . F 3 8.488 -0.027 15.079 1 47 ? F1 OQ2 504 A 1 HETATM 35 F F OQ2 . . . F 3 6.801 -0.934 16.074 1 44.6 ? F OQ2 504 A 1 HETATM 36 C C3 OQ2 . . . F 3 10.223 -2.192 18.511 1 48.8 ? C3 OQ2 504 A 1 HETATM 37 C C OQ2 . . . F 3 9.293 -1.461 17.771 1 49.94 ? C OQ2 504 A 1 HETATM 38 C C26 OQ2 . . . F 3 8.556 -0.38 18.526 1 52.44 ? C26 OQ2 504 A 1 HETATM 39 N N5 OQ2 . . . F 3 9.243 0.913 18.688 1 53.86 ? N5 OQ2 504 A 1 HETATM 40 C C29 OQ2 . . . F 3 10.699 0.826 18.613 1 57.65 ? C29 OQ2 504 A 1 HETATM 41 C C30 OQ2 . . . F 3 11.307 2.21 18.581 1 54.72 ? C30 OQ2 504 A 1 HETATM 42 N N6 OQ2 . . . F 3 10.835 3.053 19.709 1 57.81 ? N6 OQ2 504 A 1 HETATM 43 C C31 OQ2 . . . F 3 11.657 2.94 20.902 1 65.27 ? C31 OQ2 504 A 1 HETATM 44 C C32 OQ2 . . . F 3 12.114 4.301 21.384 1 61.65 ? C32 OQ2 504 A 1 HETATM 45 C C28 OQ2 . . . F 3 9.385 2.939 19.994 1 60.01 ? C28 OQ2 504 A 1 HETATM 46 C C27 OQ2 . . . F 3 8.923 1.515 19.97 1 55.24 ? C27 OQ2 504 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 46 #