data_6YGJ # _model_server_result.job_id 2rA9YsNjgiyabOjVBe8IiQ _model_server_result.datetime_utc '2025-01-23 03:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ygj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6YGJ # _exptl.entry_id 6YGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.292 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-[2-oxidanylidene-2-(2-phenylethylamino)ethoxy]phenyl]phosphonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.22 _cell.angle_gamma 90 _cell.entry_id 6YGJ _cell.length_a 98.787 _cell.length_b 76.686 _cell.length_c 90.289 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 0 76.686 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _chem_comp.formula 'C16 H18 N O5 P' _chem_comp.formula_weight 335.292 _chem_comp.id OQE _chem_comp.mon_nstd_flag . _chem_comp.name '[2-[2-oxidanylidene-2-(2-phenylethylamino)ethoxy]phenyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C23 OQE doub 237 n y C22 C21 OQE sing 238 n y C23 C05 OQE sing 239 n y O03 P02 OQE doub 240 n n C21 C20 OQE doub 241 n y O01 P02 OQE sing 242 n n C05 P02 OQE sing 243 n n C05 C06 OQE doub 244 n y P02 O04 OQE sing 245 n n C20 C06 OQE sing 246 n y C06 O07 OQE sing 247 n n C12 C13 OQE sing 248 n n C12 C11 OQE sing 249 n n O07 C08 OQE sing 250 n n C18 C13 OQE doub 251 n y C18 C17 OQE sing 252 n y C13 C14 OQE sing 253 n y C17 C16 OQE doub 254 n y C08 C09 OQE sing 255 n n C11 N10 OQE sing 256 n n C09 N10 OQE sing 257 n n C09 O19 OQE doub 258 n n C14 C15 OQE doub 259 n y C16 C15 OQE sing 260 n y C08 H082 OQE sing 261 n n C08 H081 OQE sing 262 n n C11 H111 OQE sing 263 n n C11 H112 OQE sing 264 n n C12 H122 OQE sing 265 n n C12 H121 OQE sing 266 n n C14 H141 OQE sing 267 n n C15 H151 OQE sing 268 n n C16 H161 OQE sing 269 n n C17 H171 OQE sing 270 n n C18 H181 OQE sing 271 n n C20 H201 OQE sing 272 n n C21 H211 OQE sing 273 n n C22 H221 OQE sing 274 n n C23 H231 OQE sing 275 n n N10 H101 OQE sing 276 n n O01 H1 OQE sing 277 n n O04 H2 OQE sing 278 n n # _atom_sites.entry_id 6YGJ _atom_sites.fract_transf_matrix[1][1] 0.010123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005662 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 OQE A 1 301 1 OQE C38 . F 4 OQE F 1 301 2 OQE C38 . G 5 HOH A 1 401 36 HOH HOH . G 5 HOH A 2 402 13 HOH HOH . G 5 HOH A 3 403 1 HOH HOH . G 5 HOH A 4 404 16 HOH HOH . G 5 HOH A 5 405 9 HOH HOH . G 5 HOH A 6 406 10 HOH HOH . G 5 HOH A 7 407 11 HOH HOH . G 5 HOH A 8 408 6 HOH HOH . G 5 HOH A 9 409 25 HOH HOH . G 5 HOH A 10 410 30 HOH HOH . G 5 HOH A 11 411 29 HOH HOH . G 5 HOH A 12 412 24 HOH HOH . H 5 HOH B 1 201 5 HOH HOH . H 5 HOH B 2 202 7 HOH HOH . H 5 HOH B 3 203 35 HOH HOH . H 5 HOH B 4 204 28 HOH HOH . I 5 HOH F 1 401 37 HOH HOH . I 5 HOH F 2 402 3 HOH HOH . I 5 HOH F 3 403 38 HOH HOH . I 5 HOH F 4 404 8 HOH HOH . I 5 HOH F 5 405 27 HOH HOH . I 5 HOH F 6 406 18 HOH HOH . I 5 HOH F 7 407 22 HOH HOH . I 5 HOH F 8 408 4 HOH HOH . I 5 HOH F 9 409 20 HOH HOH . I 5 HOH F 10 410 2 HOH HOH . I 5 HOH F 11 411 14 HOH HOH . I 5 HOH F 12 412 12 HOH HOH . I 5 HOH F 13 413 15 HOH HOH . I 5 HOH F 14 414 32 HOH HOH . I 5 HOH F 15 415 34 HOH HOH . I 5 HOH F 16 416 21 HOH HOH . I 5 HOH F 17 417 23 HOH HOH . I 5 HOH F 18 418 17 HOH HOH . I 5 HOH F 19 419 39 HOH HOH . J 5 HOH I 1 201 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C05 OQE . . . E 4 7.498 4.167 19.139 1 62.89 ? C05 OQE 301 A 1 HETATM 2 C C06 OQE . . . E 4 7.019 5.058 20.162 1 65.8 ? C06 OQE 301 A 1 HETATM 3 C C08 OQE . . . E 4 7.454 3.87 22.222 1 73.25 ? C08 OQE 301 A 1 HETATM 4 C C09 OQE . . . E 4 8.662 4.665 22.742 1 69.73 ? C09 OQE 301 A 1 HETATM 5 C C11 OQE . . . E 4 10.308 2.705 22.406 1 71.86 ? C11 OQE 301 A 1 HETATM 6 C C12 OQE . . . E 4 11.484 2.712 21.413 1 86.5 ? C12 OQE 301 A 1 HETATM 7 C C13 OQE . . . E 4 12.912 2.725 21.988 1 85.96 ? C13 OQE 301 A 1 HETATM 8 C C14 OQE . . . E 4 13.353 3.784 22.775 1 77.61 ? C14 OQE 301 A 1 HETATM 9 C C15 OQE . . . E 4 14.667 3.796 23.252 1 79.4 ? C15 OQE 301 A 1 HETATM 10 C C16 OQE . . . E 4 15.543 2.754 22.953 1 77.78 ? C16 OQE 301 A 1 HETATM 11 C C17 OQE . . . E 4 15.102 1.704 22.161 1 87.88 ? C17 OQE 301 A 1 HETATM 12 C C18 OQE . . . E 4 13.792 1.69 21.673 1 89.39 ? C18 OQE 301 A 1 HETATM 13 C C20 OQE . . . E 4 7.01 6.464 19.956 1 54.54 ? C20 OQE 301 A 1 HETATM 14 C C21 OQE . . . E 4 7.442 7.019 18.753 1 57.5 ? C21 OQE 301 A 1 HETATM 15 C C22 OQE . . . E 4 7.892 6.159 17.731 1 69.83 ? C22 OQE 301 A 1 HETATM 16 C C23 OQE . . . E 4 7.921 4.764 17.929 1 66.33 ? C23 OQE 301 A 1 HETATM 17 N N10 OQE . . . E 4 9.992 4.062 22.796 1 75.69 ? N10 OQE 301 A 1 HETATM 18 O O01 OQE . . . E 4 6.13 1.718 19.093 1 49.26 ? O01 OQE 301 A 1 HETATM 19 O O03 OQE . . . E 4 8.164 1.516 18.052 1 55.1 -1 O03 OQE 301 A 1 HETATM 20 O O04 OQE . . . E 4 8.211 1.779 20.429 1 63.74 -1 O04 OQE 301 A 1 HETATM 21 O O07 OQE . . . E 4 6.543 4.654 21.468 1 68.01 ? O07 OQE 301 A 1 HETATM 22 O O19 OQE . . . E 4 8.526 5.78 23.156 1 64.71 ? O19 OQE 301 A 1 HETATM 23 P P02 OQE . . . E 4 7.525 2.263 19.192 1 51.35 ? P02 OQE 301 A 1 HETATM 24 H H082 OQE . . . E 4 7.78 3.151 21.658 1 87.9 ? H082 OQE 301 A 1 HETATM 25 H H081 OQE . . . E 4 6.981 3.499 22.984 1 87.9 ? H081 OQE 301 A 1 HETATM 26 H H111 OQE . . . E 4 10.551 2.191 23.192 1 86.24 ? H111 OQE 301 A 1 HETATM 27 H H112 OQE . . . E 4 9.532 2.301 21.986 1 86.24 ? H112 OQE 301 A 1 HETATM 28 H H122 OQE . . . E 4 11.401 1.921 20.858 1 103.8 ? H122 OQE 301 A 1 HETATM 29 H H121 OQE . . . E 4 11.388 3.499 20.854 1 103.8 ? H121 OQE 301 A 1 HETATM 30 H H141 OQE . . . E 4 12.776 4.482 22.984 1 93.14 ? H141 OQE 301 A 1 HETATM 31 H H151 OQE . . . E 4 14.96 4.507 23.775 1 95.28 ? H151 OQE 301 A 1 HETATM 32 H H161 OQE . . . E 4 16.414 2.763 23.28 1 93.34 ? H161 OQE 301 A 1 HETATM 33 H H171 OQE . . . E 4 15.68 1.006 21.953 1 105.45 ? H171 OQE 301 A 1 HETATM 34 H H181 OQE . . . E 4 13.505 0.987 21.137 1 107.27 ? H181 OQE 301 A 1 HETATM 35 H H201 OQE . . . E 4 6.711 7.024 20.637 1 65.44 ? H201 OQE 301 A 1 HETATM 36 H H211 OQE . . . E 4 7.433 7.941 18.627 1 69 ? H211 OQE 301 A 1 HETATM 37 H H221 OQE . . . E 4 8.173 6.516 16.919 1 83.79 ? H221 OQE 301 A 1 HETATM 38 H H231 OQE . . . E 4 8.228 4.219 17.241 1 79.59 ? H231 OQE 301 A 1 HETATM 39 H H101 OQE . . . E 4 10.638 4.553 23.081 1 90.82 ? H101 OQE 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #