data_6YGN # _model_server_result.job_id hf0N4OWmoQUiIubN5rWtZA _model_server_result.datetime_utc '2024-10-15 13:14:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ygn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6YGN # _exptl.entry_id 6YGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.597 _cell.angle_gamma 90 _cell.entry_id 6YGN _cell.length_a 63.64 _cell.length_b 184.73 _cell.length_c 66.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6YGN _atom_sites.fract_transf_matrix[1][1] 0.015713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007868 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 601 1 EDO EDO . D 3 GOL A 1 602 37 GOL GOL . E 2 EDO B 1 601 58 EDO EDO . F 3 GOL B 1 602 10 GOL GOL . G 4 HOH A 1 701 144 HOH HOH . G 4 HOH A 2 702 127 HOH HOH . G 4 HOH A 3 703 157 HOH HOH . G 4 HOH A 4 704 206 HOH HOH . G 4 HOH A 5 705 158 HOH HOH . G 4 HOH A 6 706 159 HOH HOH . G 4 HOH A 7 707 281 HOH HOH . G 4 HOH A 8 708 54 HOH HOH . G 4 HOH A 9 709 288 HOH HOH . G 4 HOH A 10 710 107 HOH HOH . G 4 HOH A 11 711 4 HOH HOH . G 4 HOH A 12 712 289 HOH HOH . G 4 HOH A 13 713 266 HOH HOH . G 4 HOH A 14 714 57 HOH HOH . G 4 HOH A 15 715 7 HOH HOH . G 4 HOH A 16 716 256 HOH HOH . G 4 HOH A 17 717 146 HOH HOH . G 4 HOH A 18 718 14 HOH HOH . G 4 HOH A 19 719 19 HOH HOH . G 4 HOH A 20 720 3 HOH HOH . G 4 HOH A 21 721 22 HOH HOH . G 4 HOH A 22 722 91 HOH HOH . G 4 HOH A 23 723 40 HOH HOH . G 4 HOH A 24 724 9 HOH HOH . G 4 HOH A 25 725 296 HOH HOH . G 4 HOH A 26 726 141 HOH HOH . G 4 HOH A 27 727 27 HOH HOH . G 4 HOH A 28 728 105 HOH HOH . G 4 HOH A 29 729 103 HOH HOH . G 4 HOH A 30 730 254 HOH HOH . G 4 HOH A 31 731 173 HOH HOH . G 4 HOH A 32 732 45 HOH HOH . G 4 HOH A 33 733 72 HOH HOH . G 4 HOH A 34 734 106 HOH HOH . G 4 HOH A 35 735 55 HOH HOH . G 4 HOH A 36 736 170 HOH HOH . G 4 HOH A 37 737 42 HOH HOH . G 4 HOH A 38 738 303 HOH HOH . G 4 HOH A 39 739 16 HOH HOH . G 4 HOH A 40 740 5 HOH HOH . G 4 HOH A 41 741 26 HOH HOH . G 4 HOH A 42 742 121 HOH HOH . G 4 HOH A 43 743 130 HOH HOH . G 4 HOH A 44 744 20 HOH HOH . G 4 HOH A 45 745 201 HOH HOH . G 4 HOH A 46 746 13 HOH HOH . G 4 HOH A 47 747 36 HOH HOH . G 4 HOH A 48 748 138 HOH HOH . G 4 HOH A 49 749 229 HOH HOH . G 4 HOH A 50 750 235 HOH HOH . G 4 HOH A 51 751 227 HOH HOH . G 4 HOH A 52 752 63 HOH HOH . G 4 HOH A 53 753 88 HOH HOH . G 4 HOH A 54 754 43 HOH HOH . G 4 HOH A 55 755 58 HOH HOH . G 4 HOH A 56 756 2 HOH HOH . G 4 HOH A 57 757 102 HOH HOH . G 4 HOH A 58 758 80 HOH HOH . G 4 HOH A 59 759 117 HOH HOH . G 4 HOH A 60 760 31 HOH HOH . G 4 HOH A 61 761 21 HOH HOH . G 4 HOH A 62 762 59 HOH HOH . G 4 HOH A 63 763 39 HOH HOH . G 4 HOH A 64 764 77 HOH HOH . G 4 HOH A 65 765 48 HOH HOH . G 4 HOH A 66 766 167 HOH HOH . G 4 HOH A 67 767 265 HOH HOH . G 4 HOH A 68 768 56 HOH HOH . G 4 HOH A 69 769 61 HOH HOH . G 4 HOH A 70 770 207 HOH HOH . G 4 HOH A 71 771 8 HOH HOH . G 4 HOH A 72 772 148 HOH HOH . G 4 HOH A 73 773 6 HOH HOH . G 4 HOH A 74 774 89 HOH HOH . G 4 HOH A 75 775 17 HOH HOH . G 4 HOH A 76 776 275 HOH HOH . G 4 HOH A 77 777 41 HOH HOH . G 4 HOH A 78 778 178 HOH HOH . G 4 HOH A 79 779 66 HOH HOH . G 4 HOH A 80 780 47 HOH HOH . G 4 HOH A 81 781 90 HOH HOH . G 4 HOH A 82 782 60 HOH HOH . G 4 HOH A 83 783 23 HOH HOH . G 4 HOH A 84 784 93 HOH HOH . G 4 HOH A 85 785 135 HOH HOH . G 4 HOH A 86 786 69 HOH HOH . G 4 HOH A 87 787 15 HOH HOH . G 4 HOH A 88 788 35 HOH HOH . G 4 HOH A 89 789 243 HOH HOH . G 4 HOH A 90 790 71 HOH HOH . G 4 HOH A 91 791 290 HOH HOH . G 4 HOH A 92 792 251 HOH HOH . G 4 HOH A 93 793 62 HOH HOH . G 4 HOH A 94 794 274 HOH HOH . G 4 HOH A 95 795 194 HOH HOH . G 4 HOH A 96 796 292 HOH HOH . G 4 HOH A 97 797 51 HOH HOH . G 4 HOH A 98 798 293 HOH HOH . G 4 HOH A 99 799 81 HOH HOH . G 4 HOH A 100 800 180 HOH HOH . G 4 HOH A 101 801 198 HOH HOH . G 4 HOH A 102 802 181 HOH HOH . G 4 HOH A 103 803 309 HOH HOH . G 4 HOH A 104 804 166 HOH HOH . G 4 HOH A 105 805 287 HOH HOH . G 4 HOH A 106 806 99 HOH HOH . G 4 HOH A 107 807 312 HOH HOH . G 4 HOH A 108 808 165 HOH HOH . G 4 HOH A 109 809 168 HOH HOH . G 4 HOH A 110 810 30 HOH HOH . G 4 HOH A 111 811 184 HOH HOH . G 4 HOH A 112 812 115 HOH HOH . G 4 HOH A 113 813 143 HOH HOH . G 4 HOH A 114 814 223 HOH HOH . G 4 HOH A 115 815 209 HOH HOH . G 4 HOH A 116 816 109 HOH HOH . G 4 HOH A 117 817 261 HOH HOH . G 4 HOH A 118 818 118 HOH HOH . G 4 HOH A 119 819 92 HOH HOH . G 4 HOH A 120 820 211 HOH HOH . G 4 HOH A 121 821 176 HOH HOH . G 4 HOH A 122 822 277 HOH HOH . G 4 HOH A 123 823 283 HOH HOH . G 4 HOH A 124 824 64 HOH HOH . G 4 HOH A 125 825 252 HOH HOH . G 4 HOH A 126 826 97 HOH HOH . G 4 HOH A 127 827 96 HOH HOH . G 4 HOH A 128 828 32 HOH HOH . G 4 HOH A 129 829 212 HOH HOH . G 4 HOH A 130 830 126 HOH HOH . G 4 HOH A 131 831 299 HOH HOH . G 4 HOH A 132 832 123 HOH HOH . G 4 HOH A 133 833 169 HOH HOH . G 4 HOH A 134 834 208 HOH HOH . G 4 HOH A 135 835 186 HOH HOH . G 4 HOH A 136 836 189 HOH HOH . G 4 HOH A 137 837 188 HOH HOH . G 4 HOH A 138 838 187 HOH HOH . G 4 HOH A 139 839 83 HOH HOH . G 4 HOH A 140 840 128 HOH HOH . G 4 HOH A 141 841 155 HOH HOH . G 4 HOH A 142 842 140 HOH HOH . G 4 HOH A 143 843 267 HOH HOH . G 4 HOH A 144 844 276 HOH HOH . G 4 HOH A 145 845 125 HOH HOH . G 4 HOH A 146 846 85 HOH HOH . G 4 HOH A 147 847 239 HOH HOH . G 4 HOH A 148 848 78 HOH HOH . G 4 HOH A 149 849 279 HOH HOH . G 4 HOH A 150 850 222 HOH HOH . G 4 HOH A 151 851 248 HOH HOH . G 4 HOH A 152 852 129 HOH HOH . G 4 HOH A 153 853 113 HOH HOH . G 4 HOH A 154 854 295 HOH HOH . G 4 HOH A 155 855 221 HOH HOH . G 4 HOH A 156 856 284 HOH HOH . G 4 HOH A 157 857 245 HOH HOH . G 4 HOH A 158 858 134 HOH HOH . G 4 HOH A 159 859 286 HOH HOH . G 4 HOH A 160 860 163 HOH HOH . G 4 HOH A 161 861 233 HOH HOH . G 4 HOH A 162 862 304 HOH HOH . G 4 HOH A 163 863 247 HOH HOH . G 4 HOH A 164 864 164 HOH HOH . G 4 HOH A 165 865 231 HOH HOH . G 4 HOH A 166 866 101 HOH HOH . G 4 HOH A 167 867 291 HOH HOH . G 4 HOH A 168 868 260 HOH HOH . G 4 HOH A 169 869 132 HOH HOH . G 4 HOH A 170 870 226 HOH HOH . G 4 HOH A 171 871 216 HOH HOH . G 4 HOH A 172 872 305 HOH HOH . G 4 HOH A 173 873 137 HOH HOH . G 4 HOH A 174 874 246 HOH HOH . G 4 HOH A 175 875 210 HOH HOH . G 4 HOH A 176 876 204 HOH HOH . G 4 HOH A 177 877 310 HOH HOH . H 4 HOH B 1 701 282 HOH HOH . H 4 HOH B 2 702 300 HOH HOH . H 4 HOH B 3 703 87 HOH HOH . H 4 HOH B 4 704 24 HOH HOH . H 4 HOH B 5 705 171 HOH HOH . H 4 HOH B 6 706 311 HOH HOH . H 4 HOH B 7 707 44 HOH HOH . H 4 HOH B 8 708 108 HOH HOH . H 4 HOH B 9 709 197 HOH HOH . H 4 HOH B 10 710 73 HOH HOH . H 4 HOH B 11 711 236 HOH HOH . H 4 HOH B 12 712 270 HOH HOH . H 4 HOH B 13 713 70 HOH HOH . H 4 HOH B 14 714 199 HOH HOH . H 4 HOH B 15 715 136 HOH HOH . H 4 HOH B 16 716 153 HOH HOH . H 4 HOH B 17 717 193 HOH HOH . H 4 HOH B 18 718 11 HOH HOH . H 4 HOH B 19 719 179 HOH HOH . H 4 HOH B 20 720 68 HOH HOH . H 4 HOH B 21 721 34 HOH HOH . H 4 HOH B 22 722 177 HOH HOH . H 4 HOH B 23 723 1 HOH HOH . H 4 HOH B 24 724 174 HOH HOH . H 4 HOH B 25 725 154 HOH HOH . H 4 HOH B 26 726 149 HOH HOH . H 4 HOH B 27 727 104 HOH HOH . H 4 HOH B 28 728 182 HOH HOH . H 4 HOH B 29 729 10 HOH HOH . H 4 HOH B 30 730 76 HOH HOH . H 4 HOH B 31 731 161 HOH HOH . H 4 HOH B 32 732 119 HOH HOH . H 4 HOH B 33 733 142 HOH HOH . H 4 HOH B 34 734 82 HOH HOH . H 4 HOH B 35 735 111 HOH HOH . H 4 HOH B 36 736 262 HOH HOH . H 4 HOH B 37 737 139 HOH HOH . H 4 HOH B 38 738 218 HOH HOH . H 4 HOH B 39 739 86 HOH HOH . H 4 HOH B 40 740 79 HOH HOH . H 4 HOH B 41 741 190 HOH HOH . H 4 HOH B 42 742 114 HOH HOH . H 4 HOH B 43 743 12 HOH HOH . H 4 HOH B 44 744 33 HOH HOH . H 4 HOH B 45 745 234 HOH HOH . H 4 HOH B 46 746 65 HOH HOH . H 4 HOH B 47 747 84 HOH HOH . H 4 HOH B 48 748 150 HOH HOH . H 4 HOH B 49 749 147 HOH HOH . H 4 HOH B 50 750 100 HOH HOH . H 4 HOH B 51 751 50 HOH HOH . H 4 HOH B 52 752 172 HOH HOH . H 4 HOH B 53 753 162 HOH HOH . H 4 HOH B 54 754 74 HOH HOH . H 4 HOH B 55 755 120 HOH HOH . H 4 HOH B 56 756 28 HOH HOH . H 4 HOH B 57 757 298 HOH HOH . H 4 HOH B 58 758 160 HOH HOH . H 4 HOH B 59 759 133 HOH HOH . H 4 HOH B 60 760 110 HOH HOH . H 4 HOH B 61 761 156 HOH HOH . H 4 HOH B 62 762 237 HOH HOH . H 4 HOH B 63 763 152 HOH HOH . H 4 HOH B 64 764 205 HOH HOH . H 4 HOH B 65 765 280 HOH HOH . H 4 HOH B 66 766 53 HOH HOH . H 4 HOH B 67 767 151 HOH HOH . H 4 HOH B 68 768 116 HOH HOH . H 4 HOH B 69 769 200 HOH HOH . H 4 HOH B 70 770 191 HOH HOH . H 4 HOH B 71 771 230 HOH HOH . H 4 HOH B 72 772 49 HOH HOH . H 4 HOH B 73 773 145 HOH HOH . H 4 HOH B 74 774 67 HOH HOH . H 4 HOH B 75 775 46 HOH HOH . H 4 HOH B 76 776 131 HOH HOH . H 4 HOH B 77 777 38 HOH HOH . H 4 HOH B 78 778 307 HOH HOH . H 4 HOH B 79 779 241 HOH HOH . H 4 HOH B 80 780 306 HOH HOH . H 4 HOH B 81 781 29 HOH HOH . H 4 HOH B 82 782 37 HOH HOH . H 4 HOH B 83 783 203 HOH HOH . H 4 HOH B 84 784 228 HOH HOH . H 4 HOH B 85 785 271 HOH HOH . H 4 HOH B 86 786 268 HOH HOH . H 4 HOH B 87 787 124 HOH HOH . H 4 HOH B 88 788 175 HOH HOH . H 4 HOH B 89 789 112 HOH HOH . H 4 HOH B 90 790 255 HOH HOH . H 4 HOH B 91 791 264 HOH HOH . H 4 HOH B 92 792 98 HOH HOH . H 4 HOH B 93 793 25 HOH HOH . H 4 HOH B 94 794 18 HOH HOH . H 4 HOH B 95 795 52 HOH HOH . H 4 HOH B 96 796 202 HOH HOH . H 4 HOH B 97 797 122 HOH HOH . H 4 HOH B 98 798 94 HOH HOH . H 4 HOH B 99 799 219 HOH HOH . H 4 HOH B 100 800 242 HOH HOH . H 4 HOH B 101 801 313 HOH HOH . H 4 HOH B 102 802 259 HOH HOH . H 4 HOH B 103 803 269 HOH HOH . H 4 HOH B 104 804 302 HOH HOH . H 4 HOH B 105 805 238 HOH HOH . H 4 HOH B 106 806 95 HOH HOH . H 4 HOH B 107 807 75 HOH HOH . H 4 HOH B 108 808 213 HOH HOH . H 4 HOH B 109 809 225 HOH HOH . H 4 HOH B 110 810 253 HOH HOH . H 4 HOH B 111 811 249 HOH HOH . H 4 HOH B 112 812 183 HOH HOH . H 4 HOH B 113 813 214 HOH HOH . H 4 HOH B 114 814 220 HOH HOH . H 4 HOH B 115 815 185 HOH HOH . H 4 HOH B 116 816 278 HOH HOH . H 4 HOH B 117 817 215 HOH HOH . H 4 HOH B 118 818 297 HOH HOH . H 4 HOH B 119 819 196 HOH HOH . H 4 HOH B 120 820 258 HOH HOH . H 4 HOH B 121 821 232 HOH HOH . H 4 HOH B 122 822 195 HOH HOH . H 4 HOH B 123 823 192 HOH HOH . H 4 HOH B 124 824 240 HOH HOH . H 4 HOH B 125 825 263 HOH HOH . H 4 HOH B 126 826 224 HOH HOH . H 4 HOH B 127 827 244 HOH HOH . H 4 HOH B 128 828 257 HOH HOH . H 4 HOH B 129 829 273 HOH HOH . H 4 HOH B 130 830 285 HOH HOH . H 4 HOH B 131 831 250 HOH HOH . H 4 HOH B 132 832 217 HOH HOH . H 4 HOH B 133 833 308 HOH HOH . H 4 HOH B 134 834 272 HOH HOH . H 4 HOH B 135 835 301 HOH HOH . H 4 HOH B 136 836 294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 72.828 6.693 45.776 1 54.06 ? C1 EDO 601 A 1 HETATM 2 O O1 EDO . . . C 2 72.109 7.327 46.844 1 54.81 ? O1 EDO 601 A 1 HETATM 3 C C2 EDO . . . C 2 74.155 7.425 45.682 1 51.02 ? C2 EDO 601 A 1 HETATM 4 O O2 EDO . . . C 2 73.868 8.791 45.371 1 52.25 ? O2 EDO 601 A 1 HETATM 5 H H11 EDO . . . C 2 72.989 5.636 45.998 1 64.87 ? H11 EDO 601 A 1 HETATM 6 H H12 EDO . . . C 2 72.276 6.78 44.838 1 64.87 ? H12 EDO 601 A 1 HETATM 7 H HO1 EDO . . . C 2 71.248 6.899 46.951 1 65.77 ? HO1 EDO 601 A 1 HETATM 8 H H21 EDO . . . C 2 74.775 6.982 44.9 1 61.23 ? H21 EDO 601 A 1 HETATM 9 H H22 EDO . . . C 2 74.69 7.359 46.632 1 61.23 ? H22 EDO 601 A 1 HETATM 10 H HO2 EDO . . . C 2 74.696 9.287 45.304 1 62.7 ? HO2 EDO 601 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #