data_6YGZ # _model_server_result.job_id -uQkxVJNLmo932hf_cYsHg _model_server_result.datetime_utc '2024-11-15 06:08:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ygz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6YGZ # _exptl.entry_id 6YGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 305.334 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-AMINO-4-(2-PHENYLETHYL)-1,7-DIHYDRO-8H-IMIDAZO[4,5-G]QUINAZOLIN-8-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.135 _cell.angle_gamma 90 _cell.entry_id 6YGZ _cell.length_a 84.8 _cell.length_b 64.904 _cell.length_c 71.299 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 169.6 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 96 A GLY 94 1_555 A N FTR 97 A FTR 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C FTR 97 A FTR 95 1_555 A N ASP 98 A ASP 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C ARG 179 A ARG 177 1_555 A N FTR 180 A FTR 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C FTR 180 A FTR 178 1_555 A N ALA 181 A ALA 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C THR 297 A THR 295 1_555 A N FTR 298 A FTR 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C FTR 298 A FTR 296 1_555 A N ASP 299 A ASP 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C LYS 327 A LYS 325 1_555 A N FTR 328 A FTR 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C FTR 328 A FTR 326 1_555 A N SER 329 A SER 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A SG CYS 320 A CYS 318 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A SG CYS 322 A CYS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 A SG CYS 325 A CYS 323 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc4 A ND1 HIS 351 A HIS 349 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'C17 H15 N5 O' _chem_comp.formula_weight 305.334 _chem_comp.id NE8 _chem_comp.mon_nstd_flag . _chem_comp.name 6-AMINO-4-(2-PHENYLETHYL)-1,7-DIHYDRO-8H-IMIDAZO[4,5-G]QUINAZOLIN-8-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 NE8 sing 265 n n C15 C16 NE8 sing 266 n n C15 H151 NE8 sing 267 n n C15 H152 NE8 sing 268 n n C14 C5 NE8 sing 269 n n C14 H141 NE8 sing 270 n n C14 H142 NE8 sing 271 n n C5 C4 NE8 sing 272 n y C5 C6 NE8 doub 273 n y C4 N10 NE8 sing 274 n y C4 C3 NE8 doub 275 n y N10 C9 NE8 doub 276 n y C9 N23 NE8 sing 277 n n C9 N8 NE8 sing 278 n y N23 H231 NE8 sing 279 n n N23 H232 NE8 sing 280 n n N8 C7 NE8 sing 281 n y N8 HN8 NE8 sing 282 n n C7 O22 NE8 doub 283 n n C7 C3 NE8 sing 284 n y C3 C2 NE8 sing 285 n y C2 C1 NE8 doub 286 n y C2 H2 NE8 sing 287 n n C1 N11 NE8 sing 288 n y C1 C6 NE8 sing 289 n y N11 C12 NE8 sing 290 n y N11 H11 NE8 sing 291 n n C12 N13 NE8 doub 292 n y C12 H12 NE8 sing 293 n n N13 C6 NE8 sing 294 n y C16 C17 NE8 sing 295 n y C16 C21 NE8 doub 296 n y C17 C18 NE8 doub 297 n y C17 H17 NE8 sing 298 n n C18 C19 NE8 sing 299 n y C18 H18 NE8 sing 300 n n C19 C20 NE8 doub 301 n y C19 H19 NE8 sing 302 n n C20 C21 NE8 sing 303 n y C20 H20 NE8 sing 304 n n C21 H21 NE8 sing 305 n n # _atom_sites.entry_id 6YGZ _atom_sites.fract_transf_matrix[1][1] 0.011792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000853 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 NE8 A 1 402 1 NE8 NE8 . D 4 HOH A 1 501 13 HOH HOH . D 4 HOH A 2 502 75 HOH HOH . D 4 HOH A 3 503 178 HOH HOH . D 4 HOH A 4 504 66 HOH HOH . D 4 HOH A 5 505 87 HOH HOH . D 4 HOH A 6 506 28 HOH HOH . D 4 HOH A 7 507 146 HOH HOH . D 4 HOH A 8 508 158 HOH HOH . D 4 HOH A 9 509 156 HOH HOH . D 4 HOH A 10 510 83 HOH HOH . D 4 HOH A 11 511 106 HOH HOH . D 4 HOH A 12 512 50 HOH HOH . D 4 HOH A 13 513 112 HOH HOH . D 4 HOH A 14 514 95 HOH HOH . D 4 HOH A 15 515 17 HOH HOH . D 4 HOH A 16 516 153 HOH HOH . D 4 HOH A 17 517 172 HOH HOH . D 4 HOH A 18 518 52 HOH HOH . D 4 HOH A 19 519 58 HOH HOH . D 4 HOH A 20 520 55 HOH HOH . D 4 HOH A 21 521 11 HOH HOH . D 4 HOH A 22 522 7 HOH HOH . D 4 HOH A 23 523 69 HOH HOH . D 4 HOH A 24 524 155 HOH HOH . D 4 HOH A 25 525 37 HOH HOH . D 4 HOH A 26 526 15 HOH HOH . D 4 HOH A 27 527 131 HOH HOH . D 4 HOH A 28 528 84 HOH HOH . D 4 HOH A 29 529 90 HOH HOH . D 4 HOH A 30 530 130 HOH HOH . D 4 HOH A 31 531 10 HOH HOH . D 4 HOH A 32 532 40 HOH HOH . D 4 HOH A 33 533 128 HOH HOH . D 4 HOH A 34 534 129 HOH HOH . D 4 HOH A 35 535 49 HOH HOH . D 4 HOH A 36 536 1 HOH HOH . D 4 HOH A 37 537 32 HOH HOH . D 4 HOH A 38 538 110 HOH HOH . D 4 HOH A 39 539 3 HOH HOH . D 4 HOH A 40 540 64 HOH HOH . D 4 HOH A 41 541 70 HOH HOH . D 4 HOH A 42 542 149 HOH HOH . D 4 HOH A 43 543 27 HOH HOH . D 4 HOH A 44 544 85 HOH HOH . D 4 HOH A 45 545 57 HOH HOH . D 4 HOH A 46 546 180 HOH HOH . D 4 HOH A 47 547 24 HOH HOH . D 4 HOH A 48 548 41 HOH HOH . D 4 HOH A 49 549 73 HOH HOH . D 4 HOH A 50 550 20 HOH HOH . D 4 HOH A 51 551 51 HOH HOH . D 4 HOH A 52 552 62 HOH HOH . D 4 HOH A 53 553 39 HOH HOH . D 4 HOH A 54 554 117 HOH HOH . D 4 HOH A 55 555 29 HOH HOH . D 4 HOH A 56 556 12 HOH HOH . D 4 HOH A 57 557 8 HOH HOH . D 4 HOH A 58 558 14 HOH HOH . D 4 HOH A 59 559 91 HOH HOH . D 4 HOH A 60 560 150 HOH HOH . D 4 HOH A 61 561 127 HOH HOH . D 4 HOH A 62 562 2 HOH HOH . D 4 HOH A 63 563 26 HOH HOH . D 4 HOH A 64 564 78 HOH HOH . D 4 HOH A 65 565 44 HOH HOH . D 4 HOH A 66 566 140 HOH HOH . D 4 HOH A 67 567 61 HOH HOH . D 4 HOH A 68 568 99 HOH HOH . D 4 HOH A 69 569 16 HOH HOH . D 4 HOH A 70 570 18 HOH HOH . D 4 HOH A 71 571 92 HOH HOH . D 4 HOH A 72 572 45 HOH HOH . D 4 HOH A 73 573 154 HOH HOH . D 4 HOH A 74 574 54 HOH HOH . D 4 HOH A 75 575 6 HOH HOH . D 4 HOH A 76 576 157 HOH HOH . D 4 HOH A 77 577 89 HOH HOH . D 4 HOH A 78 578 19 HOH HOH . D 4 HOH A 79 579 80 HOH HOH . D 4 HOH A 80 580 81 HOH HOH . D 4 HOH A 81 581 30 HOH HOH . D 4 HOH A 82 582 102 HOH HOH . D 4 HOH A 83 583 125 HOH HOH . D 4 HOH A 84 584 4 HOH HOH . D 4 HOH A 85 585 48 HOH HOH . D 4 HOH A 86 586 21 HOH HOH . D 4 HOH A 87 587 165 HOH HOH . D 4 HOH A 88 588 22 HOH HOH . D 4 HOH A 89 589 38 HOH HOH . D 4 HOH A 90 590 35 HOH HOH . D 4 HOH A 91 591 138 HOH HOH . D 4 HOH A 92 592 23 HOH HOH . D 4 HOH A 93 593 115 HOH HOH . D 4 HOH A 94 594 188 HOH HOH . D 4 HOH A 95 595 107 HOH HOH . D 4 HOH A 96 596 105 HOH HOH . D 4 HOH A 97 597 108 HOH HOH . D 4 HOH A 98 598 53 HOH HOH . D 4 HOH A 99 599 5 HOH HOH . D 4 HOH A 100 600 94 HOH HOH . D 4 HOH A 101 601 76 HOH HOH . D 4 HOH A 102 602 113 HOH HOH . D 4 HOH A 103 603 82 HOH HOH . D 4 HOH A 104 604 25 HOH HOH . D 4 HOH A 105 605 175 HOH HOH . D 4 HOH A 106 606 166 HOH HOH . D 4 HOH A 107 607 97 HOH HOH . D 4 HOH A 108 608 77 HOH HOH . D 4 HOH A 109 609 145 HOH HOH . D 4 HOH A 110 610 93 HOH HOH . D 4 HOH A 111 611 34 HOH HOH . D 4 HOH A 112 612 43 HOH HOH . D 4 HOH A 113 613 104 HOH HOH . D 4 HOH A 114 614 9 HOH HOH . D 4 HOH A 115 615 74 HOH HOH . D 4 HOH A 116 616 189 HOH HOH . D 4 HOH A 117 617 133 HOH HOH . D 4 HOH A 118 618 148 HOH HOH . D 4 HOH A 119 619 169 HOH HOH . D 4 HOH A 120 620 103 HOH HOH . D 4 HOH A 121 621 174 HOH HOH . D 4 HOH A 122 622 65 HOH HOH . D 4 HOH A 123 623 137 HOH HOH . D 4 HOH A 124 624 134 HOH HOH . D 4 HOH A 125 625 63 HOH HOH . D 4 HOH A 126 626 96 HOH HOH . D 4 HOH A 127 627 114 HOH HOH . D 4 HOH A 128 628 109 HOH HOH . D 4 HOH A 129 629 56 HOH HOH . D 4 HOH A 130 630 122 HOH HOH . D 4 HOH A 131 631 142 HOH HOH . D 4 HOH A 132 632 187 HOH HOH . D 4 HOH A 133 633 116 HOH HOH . D 4 HOH A 134 634 179 HOH HOH . D 4 HOH A 135 635 118 HOH HOH . D 4 HOH A 136 636 182 HOH HOH . D 4 HOH A 137 637 71 HOH HOH . D 4 HOH A 138 638 167 HOH HOH . D 4 HOH A 139 639 151 HOH HOH . D 4 HOH A 140 640 36 HOH HOH . D 4 HOH A 141 641 68 HOH HOH . D 4 HOH A 142 642 111 HOH HOH . D 4 HOH A 143 643 176 HOH HOH . D 4 HOH A 144 644 159 HOH HOH . D 4 HOH A 145 645 163 HOH HOH . D 4 HOH A 146 646 147 HOH HOH . D 4 HOH A 147 647 186 HOH HOH . D 4 HOH A 148 648 143 HOH HOH . D 4 HOH A 149 649 141 HOH HOH . D 4 HOH A 150 650 121 HOH HOH . D 4 HOH A 151 651 119 HOH HOH . D 4 HOH A 152 652 168 HOH HOH . D 4 HOH A 153 653 173 HOH HOH . D 4 HOH A 154 654 164 HOH HOH . D 4 HOH A 155 655 161 HOH HOH . D 4 HOH A 156 656 46 HOH HOH . D 4 HOH A 157 657 190 HOH HOH . D 4 HOH A 158 658 42 HOH HOH . D 4 HOH A 159 659 171 HOH HOH . D 4 HOH A 160 660 72 HOH HOH . D 4 HOH A 161 661 181 HOH HOH . D 4 HOH A 162 662 120 HOH HOH . D 4 HOH A 163 663 185 HOH HOH . D 4 HOH A 164 664 162 HOH HOH . D 4 HOH A 165 665 88 HOH HOH . D 4 HOH A 166 666 135 HOH HOH . D 4 HOH A 167 667 31 HOH HOH . D 4 HOH A 168 668 183 HOH HOH . D 4 HOH A 169 669 160 HOH HOH . D 4 HOH A 170 670 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 NE8 . . . C 3 98.605 14.955 19.5 1 25.54 ? C15 NE8 402 A 1 HETATM 2 C C14 NE8 . . . C 3 98.589 16.547 19.644 1 23.37 ? C14 NE8 402 A 1 HETATM 3 C C5 NE8 . . . C 3 99.915 17.094 20.131 1 18 ? C5 NE8 402 A 1 HETATM 4 C C4 NE8 . . . C 3 100.296 17.181 21.48 1 16.97 ? C4 NE8 402 A 1 HETATM 5 N N10 NE8 . . . C 3 99.317 16.791 22.401 1 18.45 ? N10 NE8 402 A 1 HETATM 6 C C9 NE8 . . . C 3 99.627 16.885 23.695 1 19.05 ? C9 NE8 402 A 1 HETATM 7 N N23 NE8 . . . C 3 98.739 16.517 24.625 1 17.48 ? N23 NE8 402 A 1 HETATM 8 N N8 NE8 . . . C 3 100.84 17.336 24.138 1 17.68 ? N8 NE8 402 A 1 HETATM 9 C C7 NE8 . . . C 3 101.86 17.735 23.316 1 20.66 ? C7 NE8 402 A 1 HETATM 10 O O22 NE8 . . . C 3 102.939 18.109 23.767 1 24.15 ? O22 NE8 402 A 1 HETATM 11 C C3 NE8 . . . C 3 101.557 17.649 21.885 1 21.24 ? C3 NE8 402 A 1 HETATM 12 C C2 NE8 . . . C 3 102.499 18.043 20.941 1 21.71 ? C2 NE8 402 A 1 HETATM 13 C C1 NE8 . . . C 3 102.129 17.976 19.605 1 22.68 ? C1 NE8 402 A 1 HETATM 14 N N11 NE8 . . . C 3 102.774 18.348 18.454 1 23.07 ? N11 NE8 402 A 1 HETATM 15 C C12 NE8 . . . C 3 101.903 18.134 17.438 1 23.79 ? C12 NE8 402 A 1 HETATM 16 N N13 NE8 . . . C 3 100.742 17.641 17.821 1 25.27 ? N13 NE8 402 A 1 HETATM 17 C C6 NE8 . . . C 3 100.869 17.528 19.199 1 21.48 ? C6 NE8 402 A 1 HETATM 18 C C16 NE8 . . . C 3 97.237 14.366 19.239 1 31.62 ? C16 NE8 402 A 1 HETATM 19 C C17 NE8 . . . C 3 96.948 13.053 19.589 1 33.33 ? C17 NE8 402 A 1 HETATM 20 C C18 NE8 . . . C 3 95.694 12.514 19.347 1 33.57 ? C18 NE8 402 A 1 HETATM 21 C C19 NE8 . . . C 3 94.714 13.277 18.75 1 36.61 ? C19 NE8 402 A 1 HETATM 22 C C20 NE8 . . . C 3 94.986 14.582 18.397 1 37.91 ? C20 NE8 402 A 1 HETATM 23 C C21 NE8 . . . C 3 96.238 15.125 18.642 1 36.32 ? C21 NE8 402 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 884 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 23 #